mRNA_7603 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|89159
Unique NamemRNA_7603
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|89159 vs. uniprot
Match: A0A835YNA5_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNA5_9STRA)

HSP 1 Score: 142 bits (359), Expect = 4.980e-43
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 1 
Query:   52 MDNFPRPLTADLKQICMSNCQRLIDIKSYKGRRHLYGYPVRGQRTHTNAKNQKRLHKRWILSTSLDS 252
            MDNFPRPLTADLKQICMSNCQRLIDIKSYKGRRHLYGYPVRGQRTHTNAKNQKRLHKRWILSTSLDS
Sbjct:    1 MDNFPRPLTADLKQICMSNCQRLIDIKSYKGRRHLYGYPVRGQRTHTNAKNQKRLHKRWILSTSLDS 67
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BLAST of jgi.p|Trimin1|89159 vs. uniprot
Match: A0A1G1JZI5_9BACT (30S ribosomal protein S13 n=2 Tax=unclassified Candidatus Omnitrophica TaxID=1047005 RepID=A0A1G1JZI5_9BACT)

HSP 1 Score: 63.9 bits (154), Expect = 3.940e-11
Identity = 33/69 (47.83%), Postives = 44/69 (63.77%), Query Frame = 1 
Query:    4 RGKDLRRLHKLQLKASMDNFPRPLTADLKQICMSNCQRLIDIKSYKGRRHLYGYPVRGQRTHTNAKNQK 210
            R KDL      Q+ A++  F   +  DL++    N +RLIDI+SY+G RHL G PV GQRTHTNA+ +K
Sbjct:   44 RAKDLSDKEVAQITATIQKFNLKVEGDLRRENQQNIKRLIDIRSYRGSRHLKGLPVHGQRTHTNARTRK 112
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BLAST of jgi.p|Trimin1|89159 vs. uniprot
Match: M4QBU4_HISAR (Ribosomal protein S13 n=1 Tax=Histiona aroides TaxID=392300 RepID=M4QBU4_HISAR)

HSP 1 Score: 62.4 bits (150), Expect = 1.410e-10
Identity = 29/40 (72.50%), Postives = 34/40 (85.00%), Query Frame = 1 
Query:  106 NCQRLIDIKSYKGRRHLYGYPVRGQRTHTNAKNQKRLHKR 225
            N +RL+DIKSY+G RH++G PVRGQRTHTNAK QK L KR
Sbjct:   77 NLKRLLDIKSYRGLRHVHGLPVRGQRTHTNAKTQKALSKR 116
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BLAST of jgi.p|Trimin1|89159 vs. uniprot
Match: A0A140F2H0_9EUKA (Ribosomal protein S13 n=1 Tax=Moramonas marocensis TaxID=1805496 RepID=A0A140F2H0_9EUKA)

HSP 1 Score: 62.0 bits (149), Expect = 2.470e-10
Identity = 28/48 (58.33%), Postives = 37/48 (77.08%), Query Frame = 1 
Query:   73 LTADLKQICMSNCQRLIDIKSYKGRRHLYGYPVRGQRTHTNAKNQKRL 216
            + + L++I  +N +R I I+SY+G RHLYG PV GQRTHTNAK QK+L
Sbjct:   77 IESQLRKIQQNNIKRFISIRSYRGMRHLYGLPVHGQRTHTNAKTQKKL 124
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BLAST of jgi.p|Trimin1|89159 vs. uniprot
Match: Q9G886_MALJA (Ribosomal protein S13 n=1 Tax=Malawimonas jakobiformis TaxID=136089 RepID=Q9G886_MALJA)

HSP 1 Score: 60.8 bits (146), Expect = 5.850e-10
Identity = 28/46 (60.87%), Postives = 35/46 (76.09%), Query Frame = 1 
Query:   73 LTADLKQICMSNCQRLIDIKSYKGRRHLYGYPVRGQRTHTNAKNQK 210
            ++ DL++I   N +R IDIKSY+G RH   YPVRGQRTHTNA+ QK
Sbjct:   66 ISGDLRRIISINIKRYIDIKSYRGLRHKLSYPVRGQRTHTNARTQK 111
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BLAST of jgi.p|Trimin1|89159 vs. uniprot
Match: A0A7C5TC65_9BACT (30S ribosomal protein S13 n=1 Tax=Candidatus Calescamantes bacterium TaxID=2268183 RepID=A0A7C5TC65_9BACT)

HSP 1 Score: 60.1 bits (144), Expect = 1.170e-9
Identity = 31/76 (40.79%), Postives = 46/76 (60.53%), Query Frame = 1 
Query:   10 KDLRRLHKLQLKASMDNFPRPLTADLKQICMSNCQRLIDIKSYKGRRHLYGYPVRGQRTHTNAKNQKRLHKRWILS 237
            KDL      ++ A+++     +  DL++    N QRL DIK Y+G RH+ G PVRGQRTH+NA+ +K   K  +L+
Sbjct:   45 KDLTEEDVAKINAAVERLGLKVEGDLRKEISDNIQRLKDIKCYRGHRHVVGLPVRGQRTHSNARTRKGPRKHRVLA 120
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BLAST of jgi.p|Trimin1|89159 vs. uniprot
Match: A0A286QUS7_9PROT (30S ribosomal protein S13 n=1 Tax=Candidatus Nasuia deltocephalinicola TaxID=1160784 RepID=A0A286QUS7_9PROT)

HSP 1 Score: 59.3 bits (142), Expect = 2.180e-9
Identity = 30/55 (54.55%), Postives = 37/55 (67.27%), Query Frame = 1 
Query:   70 PLTADLKQICMSNCQRLIDIKSYKGRRHLYGYPVRGQRTHTNAKNQKRLHKRWIL 234
            PL  +L+     N ++LIDIK YKG RH+ G PVRGQRT TNAK  K+L K+  L
Sbjct:   63 PLEGNLRNFINLNIKKLIDIKCYKGFRHIKGLPVRGQRTKTNAKTSKKLRKKINL 117
[Close]
BLAST of jgi.p|Trimin1|89159 vs. uniprot
Match: A0A1G1IV71_9BACT (30S ribosomal protein S13 n=1 Tax=Omnitrophica bacterium GWA2_52_12 TaxID=1801816 RepID=A0A1G1IV71_9BACT)

HSP 1 Score: 58.9 bits (141), Expect = 3.430e-9
Identity = 27/43 (62.79%), Postives = 34/43 (79.07%), Query Frame = 1 
Query:   82 DLKQICMSNCQRLIDIKSYKGRRHLYGYPVRGQRTHTNAKNQK 210
            DL++    N +RLIDI+SY+G RHL G PVRGQRTHTNA+ +K
Sbjct:   69 DLRREVQQNIRRLIDIRSYRGTRHLRGLPVRGQRTHTNARTRK 111
[Close]
BLAST of jgi.p|Trimin1|89159 vs. uniprot
Match: A0A1G1K6E8_9BACT (30S ribosomal protein S13 n=2 Tax=unclassified Candidatus Omnitrophica TaxID=1047005 RepID=A0A1G1K6E8_9BACT)

HSP 1 Score: 58.9 bits (141), Expect = 3.500e-9
Identity = 30/69 (43.48%), Postives = 43/69 (62.32%), Query Frame = 1 
Query:    4 RGKDLRRLHKLQLKASMDNFPRPLTADLKQICMSNCQRLIDIKSYKGRRHLYGYPVRGQRTHTNAKNQK 210
            R K+L      Q+ + +      +  +L++    N +RLIDIKSY+G RH+ G PVRGQRTHTNA+ +K
Sbjct:   44 RAKELSEKEVAQITSIIQKSNYKVEGELRREIQKNIKRLIDIKSYRGMRHVRGLPVRGQRTHTNARTRK 112
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BLAST of jgi.p|Trimin1|89159 vs. uniprot
Match: UPI002007EC02 (mitochondrial 30S ribosomal protein S13 n=1 Tax=Antrodia serialis TaxID=139415 RepID=UPI002007EC02)

HSP 1 Score: 58.9 bits (141), Expect = 4.290e-9
Identity = 28/53 (52.83%), Postives = 38/53 (71.70%), Query Frame = 1 
Query:   64 PRPLTADLKQICMSNCQRLIDIKSYKGRRHLYGYPVRGQRTHTNAKNQKRLHK 222
            PRPL A+L++    N   L +I SY GRRH  G+PVRGQRTH+NAK  ++L++
Sbjct:   82 PRPLGAELRREIRDNIAHLRNIGSYVGRRHAQGFPVRGQRTHSNAKTARKLNR 134
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|89159 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YNA5_9STRA4.980e-43100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A1G1JZI5_9BACT3.940e-1147.8330S ribosomal protein S13 n=2 Tax=unclassified Can... [more]
M4QBU4_HISAR1.410e-1072.50Ribosomal protein S13 n=1 Tax=Histiona aroides Tax... [more]
A0A140F2H0_9EUKA2.470e-1058.33Ribosomal protein S13 n=1 Tax=Moramonas marocensis... [more]
Q9G886_MALJA5.850e-1060.87Ribosomal protein S13 n=1 Tax=Malawimonas jakobifo... [more]
A0A7C5TC65_9BACT1.170e-940.7930S ribosomal protein S13 n=1 Tax=Candidatus Cales... [more]
A0A286QUS7_9PROT2.180e-954.5530S ribosomal protein S13 n=1 Tax=Candidatus Nasui... [more]
A0A1G1IV71_9BACT3.430e-962.7930S ribosomal protein S13 n=1 Tax=Omnitrophica bac... [more]
A0A1G1K6E8_9BACT3.500e-943.4830S ribosomal protein S13 n=2 Tax=unclassified Can... [more]
UPI002007EC024.290e-952.83mitochondrial 30S ribosomal protein S13 n=1 Tax=An... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_75contigContig_75:139698..139950 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|89159|CE89158_302
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
KEGG ModuleM00178,M00179
KEGG Pathwayko03010,map03010
KEGG koko:K02952
Preferred namePRPS13
DescriptionBelongs to the universal ribosomal protein uS13 family
COG categoryJ
Max annot lvl3041|Chlorophyta
EggNOG OGsCOG0099@1|root,KOG3311@2759|Eukaryota,37U1S@33090|Viridiplantae,34I2U@3041|Chlorophyta
Evalue7.88e-09
Seed ortholog3067.XP_002956916.1
Hectar predicted targeting categoryother localisation
TranscriptId89481
TrackFilteredModels1
ProteinId89159
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|89159gene_7603Tribonema minus UTEX_B_3156 geneContig_75 139698..139950 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_7603_1exon_7603_1Tribonema minus UTEX_B_3156 exonContig_75 139698..139950 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_7603CDS_7603Tribonema minus UTEX_B_3156 CDSContig_75 139698..139899 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_7603UTR5_7603Tribonema minus UTEX_B_3156 five_prime_UTRContig_75 139900..139950 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|89159Trimin1|89159|CE89158_302Tribonema minus UTEX_B_3156 polypeptideContig_75 139698..139899 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_7603 ID=mRNA_7603|Name=jgi.p|Trimin1|89159|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=253bp|location=Sequence derived from alignment at Contig_75:139698..139950- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GCACGTGGAAAAGACTTGCGTCGTCTTCACAAGCTTCAATTAAAAGCAAG
TATGGACAATTTTCCTCGTCCTTTAACGGCAGATTTAAAACAAATTTGTA
TGTCAAACTGTCAGCGTCTTATTGATATTAAATCATATAAAGGGCGTCGT
CATTTATATGGTTACCCGGTTCGTGGTCAACGTACGCATACAAACGCGAA
AAACCAAAAACGCTTGCATAAAAGATGGATATTAAGTACCAGTCTTGATT
CGA
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protein sequence of jgi.p|Trimin1|89159

>Trimin1|89159|CE89158_302 ID=Trimin1|89159|CE89158_302|Name=jgi.p|Trimin1|89159|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=67bp
MDNFPRPLTADLKQICMSNCQRLIDIKSYKGRRHLYGYPVRGQRTHTNAK
NQKRLHKRWILSTSLDS
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mRNA from alignment at Contig_75:139698..139950-

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7603 ID=mRNA_7603|Name=jgi.p|Trimin1|89159|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=253bp|location=Sequence derived from alignment at Contig_75:139698..139950- (Tribonema minus UTEX_B_3156 )
GCACGTGGAAAAGACTTGCGTCGTCTTCACAAGCTTCAATTAAAAGCAAG
TATGGACAATTTTCCTCGTCCTTTAACGGCAGATTTAAAACAAATTTGTA
TGTCAAACTGTCAGCGTCTTATTGATATTAAATCATATAAAGGGCGTCGT
CATTTATATGGTTACCCGGTTCGTGGTCAACGTACGCATACAAACGCGAA
AAACCAAAAACGCTTGCATAAAAGATGGATATTAAGTACCAGTCTTGATT
CGA
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Coding sequence (CDS) from alignment at Contig_75:139698..139950-

>mRNA_7603 ID=mRNA_7603|Name=jgi.p|Trimin1|89159|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=202bp|location=Sequence derived from alignment at Contig_75:139698..139950- (Tribonema minus UTEX_B_3156 )
ATGGACAATTTTCCTCGTCCTTTAACGGCAGATTTAAAACAAATTTGTAT
GTCAAACTGTCAGCGTCTTATTGATATTAAATCATATAAAGGGCGTCGTC
ATTTATATGGTTACCCGGTTCGTGGTCAACGTACGCATACAAACGCGAAA
AACCAAAAACGCTTGCATAAAAGATGGATATTAAGTACCAGTCTTGATTC
GA
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