mRNA_10582 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|350871
Unique NamemRNA_10582
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|350871 vs. uniprot
Match: A0A835YLT8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLT8_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 5.030e-13
Identity = 31/31 (100.00%), Postives = 31/31 (100.00%), Query Frame = 1 
Query:    1 MARFLVGIPCPEGMGMYGSVPAPLVRALLLS 93
            MARFLVGIPCPEGMGMYGSVPAPLVRALLLS
Sbjct:    1 MARFLVGIPCPEGMGMYGSVPAPLVRALLLS 31
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BLAST of jgi.p|Trimin1|350871 vs. uniprot
Match: A0A835YKK7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKK7_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 4.060e-9
Identity = 27/29 (93.10%), Postives = 28/29 (96.55%), Query Frame = 1 
Query:    7 RFLVGIPCPEGMGMYGSVPAPLVRALLLS 93
            RFLVG+PCPEGMGMYGSVPAPLVRALL S
Sbjct: 1795 RFLVGVPCPEGMGMYGSVPAPLVRALLFS 1823
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BLAST of jgi.p|Trimin1|350871 vs. uniprot
Match: A0A835YVD7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVD7_9STRA)

HSP 1 Score: 341 bits (874), Expect = 1.760e-116
Identity = 203/203 (100.00%), Postives = 203/203 (100.00%), Query Frame = 2 
Query:  182 MASFVPQMLFLQRCGRAIMATKAGSNGAAAAVIVLAIATEPDDNEADVHNRAFNQSSATCSRSTATSFAKEEQMETAPQELAPPSSTMRSSSPQPLASSEADEQHKETAEELGXXXXXXXXXXXXPEGSEGTDLGRLLDAAERKRARREVEQVFGPAAARAATPEGPGEDSTQAEVGGADGGGAPKKSRRERKAKQPFTPTPK 790
            MASFVPQMLFLQRCGRAIMATKAGSNGAAAAVIVLAIATEPDDNEADVHNRAFNQSSATCSRSTATSFAKEEQMETAPQELAPPSSTMRSSSPQPLASSEADEQHKETAEELGXXXXXXXXXXXXPEGSEGTDLGRLLDAAERKRARREVEQVFGPAAARAATPEGPGEDSTQAEVGGADGGGAPKKSRRERKAKQPFTPTPK
Sbjct:    1 MASFVPQMLFLQRCGRAIMATKAGSNGAAAAVIVLAIATEPDDNEADVHNRAFNQSSATCSRSTATSFAKEEQMETAPQELAPPSSTMRSSSPQPLASSEADEQHKETAEELGXXXXXXXXXXXXPEGSEGTDLGRLLDAAERKRARREVEQVFGPAAARAATPEGPGEDSTQAEVGGADGGGAPKKSRRERKAKQPFTPTPK 203
[Close]
BLAST of jgi.p|Trimin1|350871 vs. uniprot
Match: A0A835YXU5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXU5_9STRA)

HSP 1 Score: 121 bits (304), Expect = 8.860e-28
Identity = 83/108 (76.85%), Postives = 88/108 (81.48%), Query Frame = 2 
Query:  464 PLASSEADEQHKETA--EELGXXXXXXXXXXXXPEGSEGTDLGRLLDAAERKRARREVEQVFGPAAARAATPEGPGEDSTQAEVGGADGGGAPKKSRRERKAKQPFTP 781
            PL  SEAD+QHKETA  EEL    XXXXXXXXX EGS GTDL R+LDAA   RARREVEQ+FGPAAA AA PEGPGEDS QAE+GGADGGG  KK+RRERKAK PFTP
Sbjct:  327 PLEGSEADKQHKETAAAEELSMETXXXXXXXXXQEGSGGTDLDRVLDAAVTNRARREVEQLFGPAAACAANPEGPGEDSMQAEIGGADGGGPAKKTRRERKAKLPFTP 434
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|350871 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A835YLT8_9STRA5.030e-13100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YKK7_9STRA4.060e-993.10Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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BLAST of jgi.p|Trimin1|350871 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A835YVD7_9STRA1.760e-116100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YXU5_9STRA8.860e-2876.85Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_74contigContig_74:631507..632973 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|350871|estExt_Genemark1.C_Ctg_740064
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionLeucine rich repeat protein
Ec32 orthologEc-11_002700.1
TranscriptId351193
TrackFilteredModels1
ProteinId350871
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|350871gene_10582Tribonema minus UTEX_B_3156 geneContig_74 631507..632973 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_10582_1exon_10582_1Tribonema minus UTEX_B_3156 exonContig_74 631507..631663 +
exon_10582_2exon_10582_2Tribonema minus UTEX_B_3156 exonContig_74 632870..632973 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_10582CDS_10582Tribonema minus UTEX_B_3156 CDSContig_74 631507..631663 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_10582UTR3_10582Tribonema minus UTEX_B_3156 three_prime_UTRContig_74 632896..632973 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|350871Trimin1|350871|estExt_Genemark1.C_Ctg_740064Tribonema minus UTEX_B_3156 polypeptideContig_74 631507..632895 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_10582 ID=mRNA_10582|Name=jgi.p|Trimin1|350871|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=261bp|location=Sequence derived from alignment at Contig_74:631507..632973+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGCACGCTTCCTCGTCGGCATCCCCTGCCCCGAGGGCATGGGTATGTA
TGGTTCGGTGCCGGCGCCACTCGTGCGCGCGCTGCTGCTGAGCGGCGGCG
GCAGCGGCGGCGGCTGCGGCGGCGGGGAGGAGGAGGAGGAGGCGGGGGCC
CAGGAGCCAGCAGCACAACCCCCGCCGCCCTGACATGTCCCCCAATGTCC
CCCCAGGCCGCCGCTGCCCGAACCCCGCTATCTGCAAGCCCCTCTGCTAC
ACCGTGTCTGT
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protein sequence of jgi.p|Trimin1|350871

>Trimin1|350871|estExt_Genemark1.C_Ctg_740064 ID=Trimin1|350871|estExt_Genemark1.C_Ctg_740064|Name=jgi.p|Trimin1|350871|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=61bp
MARFLVGIPCPEGMGMYGSVPAPLVRALLLSGGGSGGGCGGGEEEEEAGA
QEPAAQPPPP*
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mRNA from alignment at Contig_74:631507..632973+

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10582 ID=mRNA_10582|Name=jgi.p|Trimin1|350871|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1467bp|location=Sequence derived from alignment at Contig_74:631507..632973+ (Tribonema minus UTEX_B_3156 )
ATGGCACGCTTCCTCGTCGGCATCCCCTGCCCCGAGGGCATGGGTATGTA
TGGTTCGGTGCCGGCGCCACTCGTGCGCGCGCTGCTGCTGAGCGGCGGCG
GCAGCGGCGGCGGCTGCGGCGGCGGGGAGGAGGAGGAGGAGGCGGGGGCC
CAGGAGCGTGGGGGGGGGGGGGGGGGGGGGGGGGGGGATGCGGGGGGGAT
GAGGAGCGGGAGGGGGTGCAAGGGGGAGGGGGGGACGGGGGGGGGGGAGG
GGGCTGATGAAGGTTGAGAGCCACTGGCCTATTGCGTTTTGTGTGTGCTG
CATAGCCGCTTGTGATGGCGGGAAGGGAACGGCAGCAGGAAAGACGTGCA
GCATACCTGCGTGTCAGTGCTGCAGGCCTTACGCCCTCAATTCAATGTGG
ATATGGGTGACGGCATCAAAACAATCGTTCACTGTACATAGCAATGTACA
CAAGATGGTTACGGTTATGGCGCAAAGGCAGGTTGCGTCATGTCCCAGTG
ACCTCAAATGCATAAAACAATACACAAATGGTCGCAGCCTTCTTGAAGTA
TCTCCTGTTGCTTCACTTTTGCACTTTGTGCATATCAGTTGCCCATGCCC
TTGTGCGCTGGACATCATTGCCCGGATGTAAGGCAAGTCTTTGGCATGAT
CATTTGTCCATCGGTGCAAACTTCCATGAACCCATAGCAGCAGTTGCGGT
GTGTCGAGGGAACATAGTCTCTCAAGGTAGCGGCAGATTGACTTTGTGCA
CTGAAGTTGGTTGCGTCGGCAGTCCATGGAATGCACACCCATTATAAAGC
CTGAGATAAGGCACATGAGTGATGCGGCTCACCGCCATTTGATCGCTGCC
CCATTCCAATCATGAATGCATCCTTCCGTGTGGACAAATTCTTCTCTTCA
GAAGTGTGAGCATTCTTGCCATCGCGCTGGAGAGTTTGGTGCTTCACACT
GGCATTCAGCCACCACAGCCAAGCAATGAATTTCAGGCGTCGTGATTACG
CACATTACATCACCAGCGTTCCAACGATGGACAATGCACACAAGGTAAGC
TAACATCGTACTGTGTGTCTGCTGATTGCACAAGCACACAAGTCCTAACC
CTAGCCCTAGGGCACACGTGCAAACGACTCACACAGTGCCCGCATCTGCC
GCTCGTGTTCAAGCAAGCACCAGCTCATGCACATACAGTGGCACAAGCAT
GCACGCACGGAAGCAAAAACTTGAAGTCGAGTCTTCAATATGAACTGATC
AACCTTCAAATGTATTGATGTACAGCGCCGCAAGTCCGTGGTGCAAGCGC
ATTGAATAGAGGCCTACGCACGACAATACAGCAAAAGACTTTCAACCGCC
GCCGCCGCTGCAGCAGCAGCACAACCCCCGCCGCCCTGACATGTCCCCCA
ATGTCCCCCCAGGCCGCCGCTGCCCGAACCCCGCTATCTGCAAGCCCCTC
TGCTACACCGTGTCTGT
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Coding sequence (CDS) from alignment at Contig_74:631507..632973+

>mRNA_10582 ID=mRNA_10582|Name=jgi.p|Trimin1|350871|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=183bp|location=Sequence derived from alignment at Contig_74:631507..632973+ (Tribonema minus UTEX_B_3156 )
ATGGCACGCTTCCTCGTCGGCATCCCCTGCCCCGAGGGCATGGGTATGTA
TGGTTCGGTGCCGGCGCCACTCGTGCGCGCGCTGCTGCTGAGCGGCGGCG
GCAGCGGCGGCGGCTGCGGCGGCGGGGAGGAGGAGGAGGAGGCGGGGGCC
CAGGAGCCAGCAGCACAACCCCCGCCGCCCTGA
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