mRNA_10556 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|88776
Unique NamemRNA_10556
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|88776 vs. uniprot
Match: A0A836CAA0_9STRA (Snf7-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAA0_9STRA)

HSP 1 Score: 442 bits (1136), Expect = 3.890e-155
Identity = 247/247 (100.00%), Postives = 247/247 (100.00%), Query Frame = 3 
Query:   66 MNLFGKKKSAASGTPTDPTPTIMKLQETIDTLEKRETHLQKKIKAQLLEAKAKSQTDKKGALFALKRKKMYEAEINKINGARITLEQQKIALEGSNTNLQTFQAMNSGRKAMQAARGQLDVDDVDAVMDDIQEEMDIADQIGEAIARPAEGLFDDDDLLAELGAMEEAEMEETLLAAPAVPARPPSAAMAAGSPTLVVPGGARQPVAAGSGSSGMDLPSVPTGDVRVPAAEEDEDLRALRELEASML 806
            MNLFGKKKSAASGTPTDPTPTIMKLQETIDTLEKRETHLQKKIKAQLLEAKAKSQTDKKGALFALKRKKMYEAEINKINGARITLEQQKIALEGSNTNLQTFQAMNSGRKAMQAARGQLDVDDVDAVMDDIQEEMDIADQIGEAIARPAEGLFDDDDLLAELGAMEEAEMEETLLAAPAVPARPPSAAMAAGSPTLVVPGGARQPVAAGSGSSGMDLPSVPTGDVRVPAAEEDEDLRALRELEASML
Sbjct:    1 MNLFGKKKSAASGTPTDPTPTIMKLQETIDTLEKRETHLQKKIKAQLLEAKAKSQTDKKGALFALKRKKMYEAEINKINGARITLEQQKIALEGSNTNLQTFQAMNSGRKAMQAARGQLDVDDVDAVMDDIQEEMDIADQIGEAIARPAEGLFDDDDLLAELGAMEEAEMEETLLAAPAVPARPPSAAMAAGSPTLVVPGGARQPVAAGSGSSGMDLPSVPTGDVRVPAAEEDEDLRALRELEASML 247
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BLAST of jgi.p|Trimin1|88776 vs. uniprot
Match: D8LAT7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LAT7_ECTSI)

HSP 1 Score: 253 bits (647), Expect = 6.100e-81
Identity = 162/250 (64.80%), Postives = 186/250 (74.40%), Query Frame = 3 
Query:   66 MNLFGKKKSAASGTPTDPTPTIMKLQETIDTLEKRETHLQKKIKAQLLEAKAKSQT-DKKGALFALKRKKMYEAEINKINGARITLEQQKIALEGSNTNLQTFQAMNSGRKAMQAARGQLDVDDVDAVMDDIQEEMDIADQIGEAIARPAEGLFDDDDLLAELGAMEEAEMEETLLAAPAVPARPPSAAMAAGSPTLVVPGGARQPVAAGSG-SSGMDLPSVP-TGDVRVPAA-EEDEDLRALRELEASM 803
            MNLFGK K+       D T TI+KL+ET+D+L+KRE H+QKKIKAQLL+AKAKS   DK+GALFALKRKKMYE E+NK+NGAR+TLE Q IALEGSN N+QTF AM SG KAMQ ARG+LDVD VD VMDDI++EMDIA+QIG+AIARPA+ LFDDD LL EL  +EEA++EE LLA PAVP   P+A           P G  QP  A S    G +LPSVP T  V  P A EEDED RALRELEASM
Sbjct:    1 MNLFGKAKAKPQAA--DTTSTILKLRETLDSLDKRENHIQKKIKAQLLDAKAKSSAKDKRGALFALKRKKMYEGEVNKLNGARMTLESQIIALEGSNMNMQTFNAMRSGAKAMQDARGRLDVDQVDDVMDDIKDEMDIAEQIGDAIARPADDLFDDDALLEELDMLEEADLEEQLLAPPAVPTARPAA-----------PQGVEQPAVAESKVPEGYELPSVPSTTPVSAPVAVEEDEDARALRELEASM 237
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BLAST of jgi.p|Trimin1|88776 vs. uniprot
Match: A0A7S3NK50_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NK50_9STRA)

HSP 1 Score: 196 bits (499), Expect = 8.520e-59
Identity = 127/252 (50.40%), Postives = 163/252 (64.68%), Query Frame = 3 
Query:   66 MNLFGKKKSAASGTP---TDPTPTIMKLQETIDTLEKRETHLQKKIKAQLLEAKAK-SQTDKKGALFALKRKKMYEAEINKINGARITLEQQKIALEGSNTNLQTFQAMNSGRKAMQAARGQLDVDDVDAVMDDIQEEMDIADQIGEAIARPAEGLFDDDDLLAELGAMEEAEMEETLLAAPAVPARPPSAAMAAGSPTLVVPGGARQPVAAGSGSSGMDLPSVPTGDVRVPAAE--EDEDLRALRELEASM 803
            MNLFGKKK+A SGT     DP  TI++L+ T++TLEKR+ HL KKI+ QL EAK K ++ DK+GAL+ LKRKKMYE EI KINGAR+TLEQQ IA+EG+ TN +T +AM +G+ AM  AR  + VDDV  +MDDI +E++ A+ I EAI+ PA  + DD+DLL EL  +EE E+E  LL APAVPA                              + +DLP VPT    +P  +  ED D +ALRELEA+M
Sbjct:    1 MNLFGKKKAAGSGTGGGNVDPAQTILQLRNTVETLEKRQVHLDKKIEQQLAEAKVKIAKKDKRGALYCLKRKKMYEGEIEKINGARLTLEQQMIAIEGTVTNSETVKAMTAGKDAMAKARAGVTVDDVGELMDDITDEVEQANDIAEAISAPANQVLDDEDLLNELNELEELELESQLLDAPAVPA------------------------------TAIDLPDVPTATPEIPVQQNQEDADTKALRELEAAM 222
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BLAST of jgi.p|Trimin1|88776 vs. uniprot
Match: A0A7S3XYN0_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XYN0_HETAK)

HSP 1 Score: 189 bits (480), Expect = 8.900e-56
Identity = 125/250 (50.00%), Postives = 166/250 (66.40%), Query Frame = 3 
Query:   66 MNLFGKKKSAASGTPTDPTPTIMKLQETIDTLEKRETHLQKKIKAQLLEAKAK-SQTDKKGALFALKRKKMYEAEINKINGARITLEQQKIALEGSNTNLQTFQAMNSGRKAMQAARGQLDVDDVDAVMDDIQEEMDIADQIGEAIARPAEGLFDDDDLLAELGAMEEAEMEETLLAAPAVPARPPSAAMAAGSPTLVVPGGARQPVAAGSGSSGMDLPSVPTGDVRVPAAEED---EDLRALRELEASM 803
            MNLFGKKK AA    T+   TI++L+ TI+TL+KRET +  KI  Q  EAKAK  + D++GA+F LKRKKMYE EI+K+NGA++ LEQQ  ALEG++ N + F+A  +   A++AARG +D D V+  +DDI EEM++A++IGEAI+RPA+ LF+D++LL EL  +EE  +EE LLAAPA P R P AA  A          A+QP          DLP+ PTG V   A + D   +DL ALR LEA +
Sbjct:    1 MNLFGKKKKAAVPAATNTADTIIRLRGTIETLDKRETFIAAKIVQQTNEAKAKLKKKDQRGAMFCLKRKKMYEKEIDKLNGAKLQLEQQIFALEGAHINTEAFEASRAAVGALKAARGNIDADTVEETLDDINEEMELANEIGEAISRPAQELFEDEELLDELRELEELGVEEDLLAAPAAPVRAPPAAAVAEE--------AKQPA--------YDLPAAPTGAVAASAIQGDVDADDLDALRALEAEL 234
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BLAST of jgi.p|Trimin1|88776 vs. uniprot
Match: A0A482SS87_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SS87_9ARCH)

HSP 1 Score: 188 bits (478), Expect = 1.570e-55
Identity = 130/256 (50.78%), Postives = 161/256 (62.89%), Query Frame = 3 
Query:   66 MNLFGKKKSAASGTPTD-PTPTIMKLQETIDTLEKRETHLQKKIKAQLLEAKAKSQT-DKKGALFALKRKKMYEAEINKINGARITLEQQKIALEGSNTNLQTFQAMNSGRKAMQAARGQLDVDDVDAVMDDIQEEMDIADQIGEAIARPAEGLFDDDDLLAELGAMEEAEMEETLL--AAPAVPARPPSAAMAAGSPTLVVPGGARQPVAAGSGSSGMDLPSVPTGDVR-VP----AAEEDEDLRALRELEASML 806
            MNLFGKKK A    PT  P  TI KL+E+++ LEKRE H+ KKI A L EAK KSQ  DK GALFALKRKK+YEAE+ K+ GARIT+E Q ++LE ++ N++TF+AM +G  AM+A RG +D D VD VMD + EE DI D I EAI+RP + LF+D++LL EL  ++  EME ++    APA P  PP                           S  + P+VPT  V  VP    A EEDED RALRELEASML
Sbjct:    1 MNLFGKKKQAQQPVPTQSPIETIAKLRESLNILEKREEHINKKIDASLQEAKLKSQKKDKNGALFALKRKKLYEAEVAKLQGARITMETQILSLESASVNIETFKAMKTGANAMKAMRGDIDADKVDDVMDALAEEKDIQDAISEAISRPGQDLFNDEELLDELAELDALEMEASVANTVAPAAPVAPPP-------------------------QSVFNFPAVPTKAVSPVPSKPVAHEEDEDERALRELEASML 231
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BLAST of jgi.p|Trimin1|88776 vs. uniprot
Match: A0A7S2B2J5_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2B2J5_9STRA)

HSP 1 Score: 176 bits (447), Expect = 2.710e-50
Identity = 118/259 (45.56%), Postives = 156/259 (60.23%), Query Frame = 3 
Query:   66 MNLFGKKKSAASG----------TPTDPTPTIMKLQETIDTLEKRETHLQKKIKAQLLEAKAK-SQTDKKGALFALKRKKMYEAEINKINGARITLEQQKIALEGSNTNLQTFQAMNSGRKAMQAARGQLDVDDVDAVMDDIQEEMDIADQIGEAIARPAE-GLFDDDDLLAELGAMEEAEMEETLLAAPAVPARPPSAAMAAGSPTLVVPGGARQPVAAGSGSSGMDLPSVPTGDVRVPAAEEDEDLRALRELEASML 806
            MN+FG+ ++   G             D    I+KL+ T++TL+KRE H+  KI AQ  EAKAK ++ DKKGAL  +KRKKM+E EI KI GAR+TLEQQ +ALE +  N+QTF AMN G++A++AARG +D D +   MDDI+EEMD AD I  A+  P +  L DDD+LLAEL  ME+ ++E+ LL  P+VP   P                       G+    +DLP  PT  V V    ED++L ALRELEASM+
Sbjct:   40 MNIFGRPRNTGGGGGKQPVRARQAAPDAAQAILKLRGTVETLDKREAHIGTKITAQTAEAKAKLAKKDKKGALICMKRKKMFENEITKIQGARMTLEQQMMALENAAMNMQTFGAMNEGKQALKAARGGMDADTIGDTMDDIREEMDEADAIATALGAPLDDALEDDDELLAELNMMEQDDLEDKLLNPPSVPTSTP----------------------VGAAEDILDLPDAPTSQVVVDGDVEDDELAALRELEASMM 276
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BLAST of jgi.p|Trimin1|88776 vs. uniprot
Match: A0A1W0A9Q0_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A9Q0_9STRA)

HSP 1 Score: 174 bits (442), Expect = 5.070e-50
Identity = 119/254 (46.85%), Postives = 160/254 (62.99%), Query Frame = 3 
Query:   66 MNLFGKKKSAASGT-PTDPTPTIMKLQETIDTLEKRETHLQKKIKAQLLEAKAKSQT-DKKGALFALKRKKMYEAEINKINGARITLEQQKIALEGSNTNLQTFQAMNSGRKAMQAARGQLDVDDVDAVMDDIQEEMDIADQIGEAIARP-AEGLFDDDDLLAELGAMEEAEMEETLLAA-----PAVPARPPSAAMAAGSPTLVVPGGARQPVAAGSGSSGMDLPSVPTGDVRVPAAEEDEDLRALRELEASM 803
            MNLFG+K +A   T P +   TI KL+E +D LEKRE+H++KKI+AQL EAK KS   DK+GA+F LKRKKMYE+EI K+ GAR+TLE Q + LE +  N+QTF A+ +G   M+A  GQ++VD VD +MDDIQEEM  AD+IG AI++P    L+DDD+L AEL  + E ++E+ L AA     PA PAR P+ A A  +     P                + PS    +++V    + ++L  LR LEASM
Sbjct:    1 MNLFGRKAAAPVKTGPAETAETIRKLREQLDILEKRESHIEKKIEAQLEEAKKKSAAKDKRGAIFCLKRKKMYESEIEKLQGARMTLETQVMTLESTQVNMQTFTALRTGANQMKAIHGQMNVDSVDDIMDDIQEEMATADEIGRAISQPLGNALYDDDELAAELDMLVEEDLEKQLDAAHQQPAPAQPARVPAQAPATAASMFTFP----------------EAPSHAVTNIKVSGKADADELEELRRLEASM 238
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BLAST of jgi.p|Trimin1|88776 vs. uniprot
Match: A0A7S2RAI7_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RAI7_9STRA)

HSP 1 Score: 175 bits (443), Expect = 5.560e-50
Identity = 117/254 (46.06%), Postives = 160/254 (62.99%), Query Frame = 3 
Query:   66 MNLFGKKKSAAS----GTPTDPTPTIMKLQETIDTLEKRETHLQKKIKAQLLEAKAKSQT-DKKGALFALKRKKMYEAEINKINGARITLEQQKIALEGSNTNLQTFQAMNSGRKAMQAARGQLDVDDVDAVMDDIQEEMDIADQIGEAIARPA-EGLFDDDDLLAELGAMEEAEMEETLLAAPAVPARPPSAAMAAGSPTLVVPGGARQPVAAGSGSSGMDLPSVPTGDVRVPAA--EEDEDLRALRELEASM 803
            MN FG+ ++  +     TP D   +I+KL+ T+DTL+KRE H+QKKI AQ+ EA+   +  DK+ AL+ +KRKKM+E E++KI GAR+TLEQQ +ALE S T ++TF+AM  G + M+A R  +D D V   MDDI++E++ A+ I  AI  P  +GL D++ LLAEL  ME+ E+E+TLL  PAVPA  P+                             +LP+VPTG + +PAA  EEDEDL ALRELEA M
Sbjct:   27 MNFFGRPRNQPARQQQSTP-DVAQSILKLRTTVDTLDKREVHIQKKIDAQIQEARQNMKKGDKRSALYCMKRKKMFEGEVDKIRGARMTLEQQALALESSATTMETFKAMREGNQTMRALRANVDADTVGETMDDIRDEIEEANDISAAIGEPLNDGLEDEEALLAELNEMEQLELEQTLLGTPAVPAAAPALG---------------------------ELPAVPTGAISMPAAGVEEDEDLAALRELEADM 252
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BLAST of jgi.p|Trimin1|88776 vs. uniprot
Match: A0A6G0XHZ3_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XHZ3_9STRA)

HSP 1 Score: 174 bits (441), Expect = 8.780e-50
Identity = 123/252 (48.81%), Postives = 162/252 (64.29%), Query Frame = 3 
Query:   66 MNLFGKKKSAASGT-PTDPTPTIMKLQETIDTLEKRETHLQKKIKAQLLEAKAKSQT-DKKGALFALKRKKMYEAEINKINGARITLEQQKIALEGSNTNLQTFQAMNSGRKAMQAARGQLDVDDVDAVMDDIQEEMDIADQIGEAIARP-AEGLFDDDDLLAELGAMEEAEMEETLLAAPAVPARPPSAAMAAGSPTLVVPGGARQPVAAGSGSSGMDLPSVPT---GDVRVPAAEEDEDLRALRELEASM 803
            MNLFG+K  A   T P+D   TI KL+E +DTLEKRE+H++KKI  QL EAK KS   DK+GA+F LKRKKMYE+EI K+ GAR+TLE Q + LE +  N+ TFQAM  G + M+A  GQ++V+ VD +MDDIQEEM  A++I +AI++P    L+DDD+L +EL A+E+  MEE L  A A P   P+A      P    P    QP  A S +  ++LP  PT     V+V    + ++L  LR LEASM
Sbjct:    1 MNLFGRKAPAPVRTSPSDTAETIRKLREQLDTLEKRESHIEKKIALQLEEAKKKSAAKDKRGAIFCLKRKKMYESEIEKLQGARMTLETQVMTLESTQVNMATFQAMRVGTQQMKAIHGQMNVESVDDIMDDIQEEMATANEIAQAISQPIGNTLYDDDELESELAALEDLAMEEEL--ANATPVAAPAAVRPPAQPVAQRP----QPAQAVSPAV-LNLPEAPTHAVSQVKVTGKADADELEELRRLEASM 245
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BLAST of jgi.p|Trimin1|88776 vs. uniprot
Match: F0YIX7_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YIX7_AURAN)

HSP 1 Score: 172 bits (435), Expect = 3.860e-49
Identity = 107/186 (57.53%), Postives = 129/186 (69.35%), Query Frame = 3 
Query:   66 MNLFGKKKS-AASGTPTDPTPTIMKLQETIDTLEKRETHLQKKIKAQLLEAKAK-SQTDKKGALFALKRKKMYEAEINKINGARITLEQQKIALEGSNTNLQTFQAMNSGRKAMQAARGQLDVDDVDAVMDDIQEEMDIADQIGEAIARPAEGLFDDDDLLAELGAMEEAEMEETLLAAPAVPARP 617
            MNLFG+KKS AA G P+DP  TI+KL+ T++TLEKR+ HL KKI+ Q  EAK K  + DK+GAL+ LKRKKMYEAEI KINGAR+TLEQQ IA+E + TN +T  AM SG KAMQAAR  +D D V  +MDD             AI+ PA  + +DDDLL EL  MEE E+E  LL AP +PA P
Sbjct:    1 MNLFGRKKSPAAPGGPSDPAQTILKLRSTVETLEKRQVHLDKKIEQQTKEAKEKMGKKDKRGALYCLKRKKMYEAEIEKINGARLTLEQQMIAIEATVTNAETVNAMKSGAKAMQAARQNVDADTVGDLMDDXXXXXXXXXXXXXAISAPANDVLNDDDLLNELNEMEELELESQLLDAPPIPAMP 186
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|88776 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CAA0_9STRA3.890e-155100.00Snf7-domain-containing protein n=1 Tax=Tribonema m... [more]
D8LAT7_ECTSI6.100e-8164.80Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S3NK50_9STRA8.520e-5950.40Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A7S3XYN0_HETAK8.900e-5650.00Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A482SS87_9ARCH1.570e-5550.78Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A7S2B2J5_9STRA2.710e-5045.56Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A1W0A9Q0_9STRA5.070e-5046.85Uncharacterized protein n=1 Tax=Thraustotheca clav... [more]
A0A7S2RAI7_9STRA5.560e-5046.06Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A6G0XHZ3_9STRA8.780e-5048.81Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
F0YIX7_AURAN3.860e-4957.53Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_74contigContig_74:402141..405179 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|88776|CE88775_94
KEGG TC1.A.35.5
BRITEko00000,ko00001,ko00002,ko01000,ko02000,ko03009,ko04131,ko04147
KEGG ModuleM00412
KEGG Pathwayko04144,ko04217,map04144,map04217
KEGG koko:K12194,ko:K16075,ko:K17085,ko:K19306
EC2.1.1.309
GOsGO:0000003,GO:0000070,GO:0000075,GO:0000278,GO:0000280,GO:0000281,GO:0000815,GO:0000819,GO:0000902,GO:0000904,GO:0000910,GO:0000920,GO:0001894,GO:0001919,GO:0003006,GO:0003674,GO:0005215,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005737,GO:0005768,GO:0005770,GO:0005771,GO:0005829,GO:0005886,GO:0006508,GO:0006511,GO:0006605,GO:0006612,GO:0006620,GO:0006623,GO:0006807,GO:0006810,GO:0006811,GO:0006820,GO:0006862,GO:0006886,GO:0006900,GO:0006914,GO:0006950,GO:0006996,GO:0006997,GO:0006998,GO:0007009,GO:0007032,GO:0007033,GO:0007034,GO:0007040,GO:0007041,GO:0007049,GO:0007059,GO:0007080,GO:0007088,GO:0007093,GO:0007154,GO:0007165,GO:0007275,GO:0007276,GO:0007281,GO:0007292,GO:0007346,GO:0007399,GO:0008104,GO:0008150,GO:0008152,GO:0008333,GO:0008356,GO:0008565,GO:0008593,GO:0009056,GO:0009057,GO:0009268,GO:0009405,GO:0009628,GO:0009653,GO:0009838,GO:0009892,GO:0009894,GO:0009895,GO:0009898,GO:0009966,GO:0009968,GO:0009987,GO:0010008,GO:0010035,GO:0010038,GO:0010226,GO:0010256,GO:0010324,GO:0010389,GO:0010458,GO:0010467,GO:0010506,GO:0010507,GO:0010564,GO:0010639,GO:0010646,GO:0010648,GO:0010824,GO:0010941,GO:0010948,GO:0010972,GO:0012505,GO:0015031,GO:0015711,GO:0015748,GO:0015833,GO:0015865,GO:0015867,GO:0015868,GO:0015893,GO:0015931,GO:0016020,GO:0016021,GO:0016032,GO:0016043,GO:0016050,GO:0016192,GO:0016197,GO:0016236,GO:0016241,GO:0016242,GO:0016322,GO:0016358,GO:0016485,GO:0017145,GO:0019058,GO:0019068,GO:0019222,GO:0019538,GO:0019899,GO:0019941,GO:0019953,GO:0021700,GO:0022008,GO:0022402,GO:0022412,GO:0022414,GO:0022607,GO:0023051,GO:0023052,GO:0023057,GO:0030030,GO:0030117,GO:0030154,GO:0030163,GO:0030182,GO:0030425,GO:0030447,GO:0030496,GO:0031090,GO:0031175,GO:0031224,GO:0031323,GO:0031324,GO:0031329,GO:0031330,GO:0031410,GO:0031468,GO:0031505,GO:0031967,GO:0031975,GO:0031982,GO:0032465,GO:0032466,GO:0032501,GO:0032502,GO:0032504,GO:0032509,GO:0032511,GO:0032886,GO:0032989,GO:0032990,GO:0032991,GO:0033036,GO:0033043,GO:0033365,GO:0033554,GO:0034059,GO:0034613,GO:0034622,GO:0035690,GO:0036176,GO:0036177,GO:0036178,GO:0036257,GO:0036258,GO:0036293,GO:0036294,GO:0036438,GO:0036452,GO:0036477,GO:0039702,GO:0040007,GO:0040008,GO:0040012,GO:0040017,GO:0042058,GO:0042059,GO:0042078,GO:0042221,GO:0042493,GO:0042551,GO:0042592,GO:0042802,GO:0042803,GO:0042886,GO:0042995,GO:0043005,GO:0043025,GO:0043162,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043328,GO:0043632,GO:0043900,GO:0043901,GO:0043902,GO:0043903,GO:0043933,GO:0044085,GO:0044087,GO:0044088,GO:0044126,GO:0044130,GO:0044144,GO:0044146,GO:0044182,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044297,GO:0044403,GO:0044419,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044433,GO:0044440,GO:0044444,GO:0044446,GO:0044459,GO:0044463,GO:0044464,GO:0044703,GO:0044770,GO:0044772,GO:0044878,GO:0045047,GO:0045169,GO:0045184,GO:0045229,GO:0045324,GO:0045746,GO:0045786,GO:0045926,GO:0045930,GO:0046605,GO:0046618,GO:0046755,GO:0046907,GO:0046983,GO:0048132,GO:0048285,GO:0048468,GO:0048469,GO:0048475,GO:0048477,GO:0048518,GO:0048519,GO:0048523,GO:0048524,GO:0048583,GO:0048585,GO:0048609,GO:0048666,GO:0048667,GO:0048699,GO:0048731,GO:0048812,GO:0048813,GO:0048856,GO:0048858,GO:0048869,GO:0048871,GO:0050000,GO:0050789,GO:0050792,GO:0050794,GO:0050896,GO:0051117,GO:0051128,GO:0051129,GO:0051179,GO:0051234,GO:0051258,GO:0051259,GO:0051260,GO:0051276,GO:0051301,GO:0051302,GO:0051303,GO:0051310,GO:0051493,GO:0051503,GO:0051603,GO:0051604,GO:0051640,GO:0051641,GO:0051649,GO:0051656,GO:0051704,GO:0051716,GO:0051726,GO:0051782,GO:0051783,GO:0060236,GO:0060249,GO:0060255,GO:0060548,GO:0061024,GO:0061640,GO:0061919,GO:0065003,GO:0065007,GO:0065008,GO:0070482,GO:0070507,GO:0070676,GO:0070727,GO:0070887,GO:0070925,GO:0070938,GO:0070972,GO:0071214,GO:0071241,GO:0071248,GO:0071285,GO:0071453,GO:0071454,GO:0071467,GO:0071554,GO:0071555,GO:0071695,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0071852,GO:0071944,GO:0071985,GO:0072594,GO:0072599,GO:0072657,GO:0072665,GO:0072666,GO:0080171,GO:0090148,GO:0090150,GO:0090169,GO:0090224,GO:0090543,GO:0090611,GO:0097320,GO:0097447,GO:0097458,GO:0097708,GO:0098552,GO:0098562,GO:0098588,GO:0098722,GO:0098728,GO:0098796,GO:0098805,GO:0098813,GO:0104004,GO:0120025,GO:0120036,GO:0120038,GO:0120039,GO:0140014,GO:1901184,GO:1901185,GO:1901214,GO:1901215,GO:1901264,GO:1901564,GO:1901565,GO:1901575,GO:1901673,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902115,GO:1902116,GO:1902186,GO:1902188,GO:1902749,GO:1902750,GO:1902902,GO:1903047,GO:1903900,GO:1903902,GO:1904669,GO:1990635,GO:2000785
Preferred nameCHMP4C
Descriptionvacuolar transport
COG categoryS
Max annot lvl2759|Eukaryota
EggNOG OGsKOG1656@1|root,KOG1656@2759|Eukaryota
Evalue1.21e-82
Seed ortholog2880.D8LAT7
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionSnf7 family
Ec32 orthologEc-27_006420.1
TranscriptId89098
TrackFilteredModels1
ProteinId88776
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|88776gene_10556Tribonema minus UTEX_B_3156 geneContig_74 402141..405179 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|88776Trimin1|88776|CE88775_94Tribonema minus UTEX_B_3156 polypeptideContig_74 402226..405114 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_10556_4exon_10556_4Tribonema minus UTEX_B_3156 exonContig_74 402141..402573 -
exon_10556_3exon_10556_3Tribonema minus UTEX_B_3156 exonContig_74 402955..403086 -
exon_10556_2exon_10556_2Tribonema minus UTEX_B_3156 exonContig_74 403480..403639 -
exon_10556_1exon_10556_1Tribonema minus UTEX_B_3156 exonContig_74 405011..405179 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_10556UTR3_10556Tribonema minus UTEX_B_3156 three_prime_UTRContig_74 402141..402225 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_10556CDS_10556Tribonema minus UTEX_B_3156 CDSContig_74 405011..405114 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_10556UTR5_10556Tribonema minus UTEX_B_3156 five_prime_UTRContig_74 405115..405179 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_10556 ID=mRNA_10556|Name=jgi.p|Trimin1|88776|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=894bp|location=Sequence derived from alignment at Contig_74:402141..405179- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GCGAAGTCAACACAAATCGGAGCACGCGGACCTATCCAGTCACAGCGTTG
GTGCAGGCCGTCGTCATGAACCTCTTTGGGAAGAAGAAGTCAGCGGCGTC
TGGCACGCCCACTGACCCTACTCCCACCATCATGAAGCTGCAGGAGACCA
TTGATACATTAGAGAAGAGGGAAACGCACCTGCAAAAGAAGATCAAGGCG
CAGCTGCTTGAGGCCAAGGCCAAGTCGCAGACGGACAAGAAGGGCGCGCT
CTTCGCGCTCAAGCGCAAGAAGATGTACGAGGCGGAGATCAACAAGATCA
ACGGTGCGCGCATCACGCTGGAGCAGCAGAAAATAGCGCTGGAGGGGTCA
AATACAAACCTGCAGACGTTCCAGGCGATGAACAGCGGCCGGAAGGCGAT
GCAGGCGGCGCGCGGGCAGCTGGATGTGGACGATGTGGACGCTGTCATGG
ACGACATACAGGAGGAGATGGACATTGCGGACCAGATCGGCGAGGCGATC
GCGCGCCCCGCGGAGGGCCTCTTCGACGACGACGACCTCCTCGCGGAGCT
CGGCGCGATGGAGGAGGCGGAGATGGAGGAGACGCTGCTGGCGGCGCCCG
CGGTGCCGGCGCGCCCGCCGAGCGCGGCCATGGCGGCAGGGTCGCCGACG
CTCGTTGTGCCCGGTGGCGCGCGGCAGCCGGTGGCGGCGGGCAGCGGCAG
CAGCGGCATGGACCTACCGTCGGTGCCCACGGGCGACGTGCGCGTGCCCG
CGGCGGAGGAGGACGAGGACCTGCGCGCGCTGCGGGAGCTCGAGGCGAGC
ATGTTGTAGCGGCCATGGCGACGGCGGCGGCGGCAGCTACGGCGGCACCG
CTGCGGCTGCGGCCGCGCCCGCGTCGGCGACGACGGCCTGCGGT
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protein sequence of jgi.p|Trimin1|88776

>Trimin1|88776|CE88775_94 ID=Trimin1|88776|CE88775_94|Name=jgi.p|Trimin1|88776|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=248bp
MNLFGKKKSAASGTPTDPTPTIMKLQETIDTLEKRETHLQKKIKAQLLEA
KAKSQTDKKGALFALKRKKMYEAEINKINGARITLEQQKIALEGSNTNLQ
TFQAMNSGRKAMQAARGQLDVDDVDAVMDDIQEEMDIADQIGEAIARPAE
GLFDDDDLLAELGAMEEAEMEETLLAAPAVPARPPSAAMAAGSPTLVVPG
GARQPVAAGSGSSGMDLPSVPTGDVRVPAAEEDEDLRALRELEASML*
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mRNA from alignment at Contig_74:402141..405179-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10556 ID=mRNA_10556|Name=jgi.p|Trimin1|88776|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=3039bp|location=Sequence derived from alignment at Contig_74:402141..405179- (Tribonema minus UTEX_B_3156 )
GCGAAGTCAACACAAATCGGAGCACGCGGACCTATCCAGTCACAGCGTTG
GTGCAGGCCGTCGTCATGAACCTCTTTGGGAAGAAGAAGTCAGCGGCGTC
TGGCACGCCCACTGACCCTACTCCCACCATCATGAAGCTGCAGGAGACCA
TTGATACATTAGAGAAGAGGTGCGTTCCCTGCCTGCAGGCAGCCTTGCCG
CATGCGGCATGTATCACGTGCTTATAAGACGATGTAGAAATTGTTTTGGC
TCATGCAATTTCCGATCAGCAATTGAGCAGCTCTGTGTCAATTGTCTGGC
CAACTTGCTGCATGTCTTTTGTGCCAGCTGTCCGCTCGTGTACTTAGGAC
TAGATGCCTTCTTGCGTGGTGGCTTTAATGCTGGAAGGCATCATCAGCTG
GGCATGCGCCCGCAAATGTGTTCGATTGACCAAAATCACTAGTTTGATCA
AGCAGCAATCATTGCCTTGGCAAAGGTATGCTCGCCACGGGCACTTTTGG
GCTGTGTGCAGCCTGTGCCTCTCTGCTCGAATGATGCCACTTGCGTCCAC
ATCGTGGCTCAGTTGCTGATCATAGTGGTGCAGGGACGGCACTTGCGCCG
ACAGGAGTACCCTACAATCACCAAGCCATAATATAATCATCGAGAACAGT
AATTCCTGAAGCATATTCCCACCAATTCTGAGCCTTGAGTCTGTAGTCAT
TTGTACTTTACGTTCTGCGATCACAAGAAAGAGCCTACCTTACTTCTGCG
ACCATGAGAAAGAGAATGGAAAATTTTAGTTTGTAAATTGAAGAGCCATT
CCTCGTCGGCCAGATGCAACTTCAACTGCTGTAACCTCTGAAACCAAGCT
TAATGGCCCACAACCTGACGGGCCGTACAAGCCCGTGCTGCAGCACTCGT
AGCGCATTCCGTATTGTCGCTGTGACGGCAGAAATGCCTCGCTGCACTAG
GTGGTGCGCTGAGCGCGCGGTCCTGGTTTGAACTTTGAAGGACGCTGCAA
GCACAGTGGCACAGCAGTGAGCGGGAGAAATGGACGGACGGCCCGCAGAC
TGGGGGGGCGGGGGAAAGCGGCGGGGCTTGTTGGAGAGTGTAGTCATGCA
CCCCTGCTGAGTGGGGCATCATTCGCTTCGTTTATGCTATGCGTGCATCT
GCGCAAATCACCTGCACCAATGGGGAGGCCCAACGCGAACGGAACGAGAC
CCTGTTATTGCATGCGCGCGCTGACTTCACGTCCACTGTAGTGGACGTAG
CGTGGCGGGCTGGCGTCGTGTGGTCGCATGCGTGCGCGCAGCGCCGCTTG
CTTCCCTCTGCCACCAGGCACGGCGCGCTTTGCACGCATTGCAAGCCGCG
GCTACGAAAGCCGGGCGCCGCTGCTACGTCGTGCGCGCGTTCACCGCGCC
TGCACGCATCTCGCCCCCGCCGCTCGCACCCGCGCGCTGCGCAGCGACGC
TGCACGTCTGCGCACGGATGGGGACTGACGCGCTCTGATGCGCCCCGCAT
CCTTGTCTCGCCGCTGCCGCTGCTGCTGCCGCCGCCGCAGGGAAACGCAC
CTGCAAAAGAAGATCAAGGCGCAGCTGCTTGAGGCCAAGGCCAAGTCGCA
GACGGACAAGAAGGGCGCGCTCTTCGCGCTCAAGCGCAAGAAGATGTACG
AGGCGGAGATCAACAAGATCAACGGTGCGCGCATCACGCTGGAGCAGCAG
GTACGTGCGCCGCAGTGCACTGCGCTGCTGCCGTGCCGCGGCAGTGTCGC
TCACATGGCATTGGAATTCTGCGCCGGGGGATCATTGCCCCCGCTTTGCT
GCTGCTGCTCCGCATGCTGCGGATTGGTGGATGGCTGAAATGCGGCGTTG
TGTATCGGGGCGGATGTTTCATGCGCCCATCTTGCGGCAGTCGTCGATGC
TGCTGGTCAGAGCATCCAGTACGGCCCTGCAAGTCCTCCTGCTCAAGCAC
GCAGCTCATATAGCATACTGGCTTAGTTGATGTGGAGCGCTGCTGTGTCA
GCTGAGCGCTGCTGTGCTGGCCTGTTTGCACGCTGACCGCCCTGCCCCCC
CTCCCCCTGCCCCCTTCCCCCATCTTCCCCGTGCGGTGCGCAGAAAATAG
CGCTGGAGGGGTCAAATACAAACCTGCAGACGTTCCAGGCGATGAACAGC
GGCCGGAAGGCGATGCAGGCGGCGCGCGGGCAGCTGGATGTGGACGATGT
GGACGCTGTCATGGACGACATACAGGTTCGGCGATGGCAACCTCAAGTTT
GAACTTGTTTGGCAGCGGCAATGCATGTGTATCGGCATGTCTTTTGCAGG
ATTGGCGATGGCAGAATTGTCAAGCGGGAGCAGTGCGTAAGTTTGCGCAT
GGGCGCGCTGGGCGTGCAGGGCGCGGCGCAAACTGTGATCACACAAAACA
TTCACAGAGATCCATGGCGCAAATCTCTGCGCCGCGTGGTGCGAAAAGCG
GTTCGCGTCACGGACGCTGATGCGCGCATGCGCCGGCGCAGCTCTCTCTG
GGGCACGCCGATCCCGCCGCGTGCACCTGAAATGCTTGCACGCTTCCTTG
GTGATGAGCCCTCTCACACTCACACACACACACGCACCCGCCCCGCCCGC
GCGCAGGAGGAGATGGACATTGCGGACCAGATCGGCGAGGCGATCGCGCG
CCCCGCGGAGGGCCTCTTCGACGACGACGACCTCCTCGCGGAGCTCGGCG
CGATGGAGGAGGCGGAGATGGAGGAGACGCTGCTGGCGGCGCCCGCGGTG
CCGGCGCGCCCGCCGAGCGCGGCCATGGCGGCAGGGTCGCCGACGCTCGT
TGTGCCCGGTGGCGCGCGGCAGCCGGTGGCGGCGGGCAGCGGCAGCAGCG
GCATGGACCTACCGTCGGTGCCCACGGGCGACGTGCGCGTGCCCGCGGCG
GAGGAGGACGAGGACCTGCGCGCGCTGCGGGAGCTCGAGGCGAGCATGTT
GTAGCGGCCATGGCGACGGCGGCGGCGGCAGCTACGGCGGCACCGCTGCG
GCTGCGGCCGCGCCCGCGTCGGCGACGACGGCCTGCGGT
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Coding sequence (CDS) from alignment at Contig_74:402141..405179-

>mRNA_10556 ID=mRNA_10556|Name=jgi.p|Trimin1|88776|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=744bp|location=Sequence derived from alignment at Contig_74:402141..405179- (Tribonema minus UTEX_B_3156 )
ATGAACCTCTTTGGGAAGAAGAAGTCAGCGGCGTCTGGCACGCCCACTGA
CCCTACTCCCACCATCATGAAGCTGCAGGAGACCATTGATACATTAGAGA
AGAGGGAAACGCACCTGCAAAAGAAGATCAAGGCGCAGCTGCTTGAGGCC
AAGGCCAAGTCGCAGACGGACAAGAAGGGCGCGCTCTTCGCGCTCAAGCG
CAAGAAGATGTACGAGGCGGAGATCAACAAGATCAACGGTGCGCGCATCA
CGCTGGAGCAGCAGAAAATAGCGCTGGAGGGGTCAAATACAAACCTGCAG
ACGTTCCAGGCGATGAACAGCGGCCGGAAGGCGATGCAGGCGGCGCGCGG
GCAGCTGGATGTGGACGATGTGGACGCTGTCATGGACGACATACAGGAGG
AGATGGACATTGCGGACCAGATCGGCGAGGCGATCGCGCGCCCCGCGGAG
GGCCTCTTCGACGACGACGACCTCCTCGCGGAGCTCGGCGCGATGGAGGA
GGCGGAGATGGAGGAGACGCTGCTGGCGGCGCCCGCGGTGCCGGCGCGCC
CGCCGAGCGCGGCCATGGCGGCAGGGTCGCCGACGCTCGTTGTGCCCGGT
GGCGCGCGGCAGCCGGTGGCGGCGGGCAGCGGCAGCAGCGGCATGGACCT
ACCGTCGGTGCCCACGGGCGACGTGCGCGTGCCCGCGGCGGAGGAGGACG
AGGACCTGCGCGCGCTGCGGGAGCTCGAGGCGAGCATGTTGTAG
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