mRNA_13446 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|87896
Unique NamemRNA_13446
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|87896 vs. uniprot
Match: A0A835YNQ0_9STRA (CDGSH iron sulfur domain-containing protein 1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNQ0_9STRA)

HSP 1 Score: 221 bits (563), Expect = 5.260e-72
Identity = 109/109 (100.00%), Postives = 109/109 (100.00%), Query Frame = 3 
Query:   60 MVELVLTENVLKIIVAVLSMAVAILLHLRRSASTSGNRCNHSIQLDNPKVVDKVGFTEIEELPSCKKNGTAVFCRCWKSKNFPYCDGSHATHNRETGDNVGPLIIAKDK 386
            MVELVLTENVLKIIVAVLSMAVAILLHLRRSASTSGNRCNHSIQLDNPKVVDKVGFTEIEELPSCKKNGTAVFCRCWKSKNFPYCDGSHATHNRETGDNVGPLIIAKDK
Sbjct:    1 MVELVLTENVLKIIVAVLSMAVAILLHLRRSASTSGNRCNHSIQLDNPKVVDKVGFTEIEELPSCKKNGTAVFCRCWKSKNFPYCDGSHATHNRETGDNVGPLIIAKDK 109
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BLAST of jgi.p|Trimin1|87896 vs. uniprot
Match: J3JTG0_DENPD (CDGSH iron-sulfur domain-containing protein 2 homolog n=1 Tax=Dendroctonus ponderosae TaxID=77166 RepID=J3JTG0_DENPD)

HSP 1 Score: 100 bits (250), Expect = 3.250e-24
Identity = 43/78 (55.13%), Postives = 55/78 (70.51%), Query Frame = 3 
Query:  147 RSASTSGNRCNHSIQLDNPKVVDKVGFTEIEELPSCKKNGTAVFCRCWKSKNFPYCDGSHATHNRETGDNVGPLIIAK 380
            ++      RCN++IQL NPKVVD +   +I +         AVFCRCWKSKN+PYCDGSHA HN+ETGDN+GP+I+ K
Sbjct:   60 KARKCGSGRCNNAIQLTNPKVVDTIDVEDITD--------KAVFCRCWKSKNWPYCDGSHAAHNKETGDNLGPVIVKK 129
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BLAST of jgi.p|Trimin1|87896 vs. uniprot
Match: A0A183CTC9_GLOPA (ZnF_CDGSH domain-containing protein n=1 Tax=Globodera pallida TaxID=36090 RepID=A0A183CTC9_GLOPA)

HSP 1 Score: 96.7 bits (239), Expect = 3.420e-23
Identity = 46/80 (57.50%), Postives = 55/80 (68.75%), Query Frame = 3 
Query:  147 RSASTSGNRCNHSIQLDNPKVVDKVGFTEIEELPSCKKNGTAVFCRCWKSKNFPYCDGSHATHNRETGDNVGPLIIAKDK 386
            RSA+T   RCN  +QLD  KVVD +   E+E++   K      FCRCW+SK FPYCDG+H  HN+ETGDNVGPLII K K
Sbjct:    4 RSAATKLARCNKRVQLDKDKVVDTL---ELEDIGQMK-----AFCRCWQSKKFPYCDGTHNAHNKETGDNVGPLIIQKAK 75
[Close]
BLAST of jgi.p|Trimin1|87896 vs. uniprot
Match: A0A6J2Y349_SITOR (CDGSH iron-sulfur domain-containing protein 2 homolog n=1 Tax=Sitophilus oryzae TaxID=7048 RepID=A0A6J2Y349_SITOR)

HSP 1 Score: 97.8 bits (242), Expect = 5.180e-23
Identity = 42/72 (58.33%), Postives = 51/72 (70.83%), Query Frame = 3 
Query:  171 RCNHSIQLDNPKVVDKVGFTEIEELPSCKKNGTAVFCRCWKSKNFPYCDGSHATHNRETGDNVGPLIIAKDK 386
            R N  +QL NPKVVD +   +I E         A FCRCWKSKN+PYCDGSHA HN+ETGDN+GP+I+ K+K
Sbjct:   68 RTNKIVQLSNPKVVDTIDVEDISE--------KAAFCRCWKSKNWPYCDGSHANHNKETGDNIGPVIVKKNK 131
[Close]
BLAST of jgi.p|Trimin1|87896 vs. uniprot
Match: A0A834M2Q6_RHYFE (CDGSH iron-sulfur domain-containing protein 2 homolog n=1 Tax=Rhynchophorus ferrugineus TaxID=354439 RepID=A0A834M2Q6_RHYFE)

HSP 1 Score: 97.8 bits (242), Expect = 5.180e-23
Identity = 46/77 (59.74%), Postives = 54/77 (70.13%), Query Frame = 3 
Query:  156 STSGNRCNHSIQLDNPKVVDKVGFTEIEELPSCKKNGTAVFCRCWKSKNFPYCDGSHATHNRETGDNVGPLIIAKDK 386
            S SG + N  IQL NPKVVD +   +I        +G A FCRCWKSKN+PYCDGSHA HN+ETGDNVGP+I+ K K
Sbjct:   64 SCSG-KLNQVIQLSNPKVVDTIDVEDI--------SGKAAFCRCWKSKNWPYCDGSHAAHNKETGDNVGPVIVKKAK 131
[Close]
BLAST of jgi.p|Trimin1|87896 vs. uniprot
Match: A0A662YE53_9STRA (ZnF_CDGSH domain-containing protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662YE53_9STRA)

HSP 1 Score: 97.1 bits (240), Expect = 1.120e-22
Identity = 43/70 (61.43%), Postives = 50/70 (71.43%), Query Frame = 3 
Query:  171 RCNHSIQLDNPKVVDKVGFTEIEELPSCKKNGTAVFCRCWKSKNFPYCDGSHATHNRETGDNVGPLIIAK 380
            R N  IQL+  KVVD V   E+E+L S  KNG    CRCWKSK FP+CDGSH  HN+ETGDNVGPL++ K
Sbjct:   67 RLNRQIQLEKEKVVDFVSVPEVEDLLS--KNGKCTVCRCWKSKKFPFCDGSHQKHNKETGDNVGPLVLQK 134
[Close]
BLAST of jgi.p|Trimin1|87896 vs. uniprot
Match: A0A482T5K1_9ARCH (CDGSH iron-sulfur domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482T5K1_9ARCH)

HSP 1 Score: 97.4 bits (241), Expect = 1.360e-22
Identity = 41/70 (58.57%), Postives = 53/70 (75.71%), Query Frame = 3 
Query:  171 RCNHSIQLDNPKVVDKVGFTEIEELPSCKKNGTAVFCRCWKSKNFPYCDGSHATHNRETGDNVGPLIIAK 380
            R N+ ++LD+PKVVD V   ++E++   K +G  + CRCWKS+ FPYCDGSH  HN+ETGDNVGPLII K
Sbjct:   86 RINNKVKLDSPKVVDMVKCADMEDMAQYK-DGKLIMCRCWKSETFPYCDGSHVRHNKETGDNVGPLIIQK 154
[Close]
BLAST of jgi.p|Trimin1|87896 vs. uniprot
Match: A0A1W4WPU7_AGRPL (CDGSH iron-sulfur domain-containing protein 2 homolog n=1 Tax=Agrilus planipennis TaxID=224129 RepID=A0A1W4WPU7_AGRPL)

HSP 1 Score: 95.5 bits (236), Expect = 4.010e-22
Identity = 42/70 (60.00%), Postives = 49/70 (70.00%), Query Frame = 3 
Query:  171 RCNHSIQLDNPKVVDKVGFTEIEELPSCKKNGTAVFCRCWKSKNFPYCDGSHATHNRETGDNVGPLIIAK 380
            R NH I   NPKVVD V   +I +         AVFCRCWKSKN+PYCDGSH +HN+ETGDNVGPL++ K
Sbjct:   67 RVNHIIHRSNPKVVDTVDVEDITD--------KAVFCRCWKSKNWPYCDGSHGSHNKETGDNVGPLVVKK 128
[Close]
BLAST of jgi.p|Trimin1|87896 vs. uniprot
Match: A0A2H2IJT2_CAEJA (ZnF_CDGSH domain-containing protein n=1 Tax=Caenorhabditis japonica TaxID=281687 RepID=A0A2H2IJT2_CAEJA)

HSP 1 Score: 94.4 bits (233), Expect = 5.350e-22
Identity = 43/72 (59.72%), Postives = 52/72 (72.22%), Query Frame = 3 
Query:  171 RCNHSIQLDNPKVVDKVGFTEIEELPSCKKNGTAVFCRCWKSKNFPYCDGSHATHNRETGDNVGPLIIAKDK 386
            RCN+ I+LD+ KV D V   +I E    KK    V+CRCWKSKN+PYCDGSH  HN+ETGDNVGPLI+  +K
Sbjct:   39 RCNNLIKLDSKKVADTVDIEDIGE----KK----VYCRCWKSKNWPYCDGSHGAHNKETGDNVGPLIVKSEK 102
[Close]
BLAST of jgi.p|Trimin1|87896 vs. uniprot
Match: A0A024GE78_9STRA (ZnF_CDGSH domain-containing protein n=2 Tax=Albugo TaxID=65356 RepID=A0A024GE78_9STRA)

HSP 1 Score: 95.5 bits (236), Expect = 5.540e-22
Identity = 43/72 (59.72%), Postives = 51/72 (70.83%), Query Frame = 3 
Query:  171 RCNHSIQLDNPKVVDKVGFTEIEELPSCKKNGTAVFCRCWKSKNFPYCDGSHATHNRETGDNVGPLIIAKDK 386
            R N SI+L + KVVD +  T++E+L   K +G  V CRCWKSK FPYCDGSH  HN+ TGDNVGPLII   K
Sbjct:   71 RINGSIKLSSAKVVDTLKITDVEDL-CAKGDGKCVMCRCWKSKTFPYCDGSHTKHNKATGDNVGPLIIQSGK 141
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|87896 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YNQ0_9STRA5.260e-72100.00CDGSH iron sulfur domain-containing protein 1 n=1 ... [more]
J3JTG0_DENPD3.250e-2455.13CDGSH iron-sulfur domain-containing protein 2 homo... [more]
A0A183CTC9_GLOPA3.420e-2357.50ZnF_CDGSH domain-containing protein n=1 Tax=Globod... [more]
A0A6J2Y349_SITOR5.180e-2358.33CDGSH iron-sulfur domain-containing protein 2 homo... [more]
A0A834M2Q6_RHYFE5.180e-2359.74CDGSH iron-sulfur domain-containing protein 2 homo... [more]
A0A662YE53_9STRA1.120e-2261.43ZnF_CDGSH domain-containing protein n=2 Tax=Nothop... [more]
A0A482T5K1_9ARCH1.360e-2258.57CDGSH iron-sulfur domain-containing protein n=1 Ta... [more]
A0A1W4WPU7_AGRPL4.010e-2260.00CDGSH iron-sulfur domain-containing protein 2 homo... [more]
A0A2H2IJT2_CAEJA5.350e-2259.72ZnF_CDGSH domain-containing protein n=1 Tax=Caenor... [more]
A0A024GE78_9STRA5.540e-2259.72ZnF_CDGSH domain-containing protein n=2 Tax=Albugo... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_72contigContig_72:393406..395917 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|87896|CE87895_63
DescriptionZinc finger CDGSH domain-containing protein 1. Source PGD
COG categoryS
Max annot lvl121069|Pythiales
EggNOG OGsKOG3461@1|root,KOG3461@2759|Eukaryota,1MGTZ@121069|Pythiales
Evalue1.13e-24
Seed ortholog115417.EPrPW00000024968
Hectar predicted targeting categorysignal peptide
TranscriptId88218
TrackFilteredModels1
ProteinId87896
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|87896gene_13446Tribonema minus UTEX_B_3156 geneContig_72 393406..395917 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|87896Trimin1|87896|CE87895_63Tribonema minus UTEX_B_3156 polypeptideContig_72 393717..395777 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_13446_1exon_13446_1Tribonema minus UTEX_B_3156 exonContig_72 393406..393441 +
exon_13446_2exon_13446_2Tribonema minus UTEX_B_3156 exonContig_72 393694..393863 +
exon_13446_3exon_13446_3Tribonema minus UTEX_B_3156 exonContig_72 394270..394365 +
exon_13446_4exon_13446_4Tribonema minus UTEX_B_3156 exonContig_72 395691..395917 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_13446UTR5_13446Tribonema minus UTEX_B_3156 five_prime_UTRContig_72 393406..393441 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_13446CDS_13446Tribonema minus UTEX_B_3156 CDSContig_72 393717..393863 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_13446UTR3_13446Tribonema minus UTEX_B_3156 three_prime_UTRContig_72 395778..395917 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_13446 ID=mRNA_13446|Name=jgi.p|Trimin1|87896|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=529bp|location=Sequence derived from alignment at Contig_72:393406..395917+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
TTCCAAGCTTGTGAGGAGCGATCGACCCAGAGCCAGCAAGACAACAGGCA
GCAGTGATCATGGTGGAGCTAGTCCTCACGGAGAATGTACTGAAGATCAT
TGTGGCGGTGCTGTCCATGGCGGTGGCCATCCTGCTGCACCTGCGCAGAT
CTGCTTCCACCTCCGGCAACAGATGCAACCACAGCATACAGTTGGACAAC
CCAAAGGTTGTGGACAAGGTCGGATTTACGGAGATTGAGGAGCTGCCGTC
CTGCAAGAAGAACGGCACGGCTGTGTTTTGCCGATGCTGGAAGTCAAAGA
ATTTCCCATACTGCGATGGCTCGCACGCCACGCACAACCGCGAAACCGGC
GACAACGTTGGTCCCCTCATCATTGCGAAGGACAAGTAGCTGCGTACCAT
GCGTACTACTCCCAGAACGTTTGGTTCGCTTAGCCATGGCCTGGACCTGA
AGTTGACATCGCCCCTGGTGGGCACGTGGAATGATGGTGGAGGCCACTCT
GTGCAGCGCGCGATACGCCCCCTATCCCT
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protein sequence of jgi.p|Trimin1|87896

>Trimin1|87896|CE87895_63 ID=Trimin1|87896|CE87895_63|Name=jgi.p|Trimin1|87896|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=110bp
MVELVLTENVLKIIVAVLSMAVAILLHLRRSASTSGNRCNHSIQLDNPKV
VDKVGFTEIEELPSCKKNGTAVFCRCWKSKNFPYCDGSHATHNRETGDNV
GPLIIAKDK*
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mRNA from alignment at Contig_72:393406..395917+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_13446 ID=mRNA_13446|Name=jgi.p|Trimin1|87896|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2512bp|location=Sequence derived from alignment at Contig_72:393406..395917+ (Tribonema minus UTEX_B_3156 )
TTCCAAGCTTGTGAGGAGCGATCGACCCAGAGCCAGGTGCGCACAACAGT
ATCATTTGTCGCGTTGACACCAGTCTGAAAGGAAGGAAACCATGGATCCG
GATACGCACTTCAGGATCTGATGTCCATTTGCAGGGGAATGCTCAATCCG
CGAGATCCATAGTACGCTTGAGTCTAACACGCTTGACAGTTGTCAATCAT
TCACGAACTCTTGCTGTTCATCATTCTCATTTGCACTCGTCTTTCCATCG
CCAACTTTGTAAACTTTGCTTTTGCGTGTTGCCAGCAGCAAGACAACAGG
CAGCAGTGATCATGGTGGAGCTAGTCCTCACGGAGAATGTACTGAAGATC
ATTGTGGCGGTGCTGTCCATGGCGGTGGCCATCCTGCTGCACCTGCGCAG
ATCTGCTTCCACCTCCGGCAACAGATGCAACCACAGCATACAGTTGGACA
ACCCAAAGGTAACAGCAAGTGTCATACACGTGTGAGACATGTTGCTAGAG
CCATGGGTCGAAACCCACTTTACTGAGCATGCCAAATAGTCATGTTGCTA
TGCGCAGGAGCAGGCATTAAAAGAGCACAACAGGCGCTTTAATTCGTGCA
TGCAGATCTGTTGCATTTATCATGATAGTCAGCACAGCACTGCCTCCTGC
TACTGAATTGCACCTGACTAATATGGTGATGAACGTGAGGTCAGATGCAC
GCTCTGCACGCGACAGCACCCTCCAACAGCACCACCCCATCAGTGCCTTT
GTACAGCTTGCTGTGTCGCTCCCCGACCTTCGCACGCAAAAGAGATGGCT
GAGCCTGGCAACGTACTGTGCCGACTCACTCTTGCGCAAATGCACTCCTG
TTGCATCATTGCAGGTTGTGGACAAGGTCGGATTTACGGAGATTGAGGAG
CTGCCGTCCTGCAAGAAGAACGGCACGGCTGTGTTTTGCCGATGCTGGAA
GTCAAAGAATGTGAGTCCTACCCCCCCTGATGCCAATCACCCACGCATAG
CTACTGTATACCCCCCCCCCCCCCCCCCGTTTAGTCGCGCTGCGAGGCGC
ATGTTGGAACAACGGGGGGTCTTATACAATGTACCCCCCGTCTTGCACGC
GCGTGGGTGGCTGCGGTCGCATATATAGCATGATGAATACTGCAGCACTT
CTGCTGCTGCAAGCAGCAGGCAACAAATGTACGTTCTGCAGCTTCTGCCC
AAGCACGCCTGGCTTGAACACCTCCTTAGCACTACAACGGTGTACGGCTG
CAGAGGGCGTTTGCAGCAACGCAGCACTGCAGTCTACTTTTTCTTCGCAA
CGAATTTTTGTTGAAGTACGCGCAACTGCCTTCCTTCTTCTACAACCCCT
GGTCTTATATGACACGTGCCTACCCCGATGCAATGTCTTGCATGCACGCC
CACACCTCACAGAGGGGGCACGGTGGGTCTTGTACCACGGCATAAAATGA
TGAGTTCTTGTACGAGACGGGGGTTTACCCCGTCGTCTACGGTAGCACCC
TGGACTAATATGCTAACTGCCAAAGCATAGCTACATGCAGCTAAGTGCTC
GACCTGTGACAATGGCTCCTATGGTCATGCTTAGAAATCTTTCTCGGCGC
ATGTACCAGCTGTCACAGTTAGTTCCTAGTGCCGTGCTGCGCTCTGTAAT
GTAGTTGCGGTACTGCCATCCACCCCAATGTATACATGACATACGCAGGG
CCTTGAAATTGCAGGTTTTGCCACTCTTGCAGCGGATTTCTATGCGTCCA
CCCCTTGTAGTTTGCTCCGCAAAAGGACGTCCATCCCCCGTTTTTATGCG
TAACAAAGATGCCGTCCAGTGTCTTAACTATGAACAAGACAGCACATGTG
TTTCGTTGCCAGATTCCACTCATTGAGGGTGGCAGTGTTGGTCAAAGTGA
CATCATGGCCACGATACTTGGAGGGCATTCATGTTGCCTCTGACTTCTTG
TGCTGGAGGGTGTGTACTGCAGTGGCAGCAGTGCCATAAGCCACCTCTGT
GGCTGTGTGCTTGCTGCGCACAACTCACAATGACCTGAGACTTGCCCATG
GTCTCAATGTCTCCAGTTTTCAACTTGTCAACCTGGTATTGAAGGGCAGC
CCGGCAATATTGCAACTGGAATCGTACTGCAGTGTCATCAGGATGCTTGC
TAGGATGCTCCTGGGAATTTTTGTCAAGGCTTTCATCAGCTTTTCTGTGA
AGTTGGACTTTGGAATGTATGCGTTGCATACTGAGCTGTGCTGAGCTACC
ACTGCCCTTCGCCCTGCTGCTCGCTACTGCTGCAGTTCCCATACTGCGAT
GGCTCGCACGCCACGCACAACCGCGAAACCGGCGACAACGTTGGTCCCCT
CATCATTGCGAAGGACAAGTAGCTGCGTACCATGCGTACTACTCCCAGAA
CGTTTGGTTCGCTTAGCCATGGCCTGGACCTGAAGTTGACATCGCCCCTG
GTGGGCACGTGGAATGATGGTGGAGGCCACTCTGTGCAGCGCGCGATACG
CCCCCTATCCCT
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Coding sequence (CDS) from alignment at Contig_72:393406..395917+

>mRNA_13446 ID=mRNA_13446|Name=jgi.p|Trimin1|87896|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=330bp|location=Sequence derived from alignment at Contig_72:393406..395917+ (Tribonema minus UTEX_B_3156 )
ATGGTGGAGCTAGTCCTCACGGAGAATGTACTGAAGATCATTGTGGCGGT
GCTGTCCATGGCGGTGGCCATCCTGCTGCACCTGCGCAGATCTGCTTCCA
CCTCCGGCAACAGATGCAACCACAGCATACAGTTGGACAACCCAAAGGTT
GTGGACAAGGTCGGATTTACGGAGATTGAGGAGCTGCCGTCCTGCAAGAA
GAACGGCACGGCTGTGTTTTGCCGATGCTGGAAGTCAAAGAATTTCCCAT
ACTGCGATGGCTCGCACGCCACGCACAACCGCGAAACCGGCGACAACGTT
GGTCCCCTCATCATTGCGAAGGACAAGTAG
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