mRNA_12412 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|350766 vs. uniprot
Match: A0A835YKX2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKX2_9STRA) HSP 1 Score: 680 bits (1755), Expect = 4.510e-243 Identity = 464/464 (100.00%), Postives = 464/464 (100.00%), Query Frame = 1
Query: 1 MDADGFVLVDANGYATGKTFGLSGRTASTSGKMPARIATASDTDSMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDGILAAVKNSLAGSRALGGDYFHVHFADAAAHALEQRGWGSFLADRVRPMYKSSKKRARKLARGARKRFYGGSAWSSKDAGASSPPPLLPRRRPREINWHACAVSAIVLLAAAMVTAAVYAVALKVSAAALPVTVVGPTGRTTTLTLRTYSTLAAAEARVARAIPGSSADPDAVASPETVPWRLYHEEQRLEDSSRSLESYGVRPGAELSAVAAVRVRVNIYDKATVPTGKKGSTDSGARNLPIEGAEGGHEDTYDSYGRHQLWHQGNRLNDAQILYNYCSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDSDEIVSCELDFASVTPVTAAGVLTVTATTLLWAGYALMFGAPLGL 1392
MDADGFVLVDANGYATGKTFGLSGRTASTSGKMPARIATASDTDSMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDGILAAVKNSLAGSRALGGDYFHVHFADAAAHALEQRGWGSFLADRVRPMYKSSKKRARKLARGARKRFYGGSAWSSKDAGASSPPPLLPRRRPREINWHACAVSAIVLLAAAMVTAAVYAVALKVSAAALPVTVVGPTGRTTTLTLRTYSTLAAAEARVARAIPGSSADPDAVASPETVPWRLYHEEQRLEDSSRSLESYGVRPGAELSAVAAVRVRVNIYDKATVPTGKKGSTDSGARNLPIEGAEGGHEDTYDSYGRHQLWHQGNRLNDAQILYNYCSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDSDEIVSCELDFASVTPVTAAGVLTVTATTLLWAGYALMFGAPLGL
Sbjct: 1 MDADGFVLVDANGYATGKTFGLSGRTASTSGKMPARIATASDTDSMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDGILAAVKNSLAGSRALGGDYFHVHFADAAAHALEQRGWGSFLADRVRPMYKSSKKRARKLARGARKRFYGGSAWSSKDAGASSPPPLLPRRRPREINWHACAVSAIVLLAAAMVTAAVYAVALKVSAAALPVTVVGPTGRTTTLTLRTYSTLAAAEARVARAIPGSSADPDAVASPETVPWRLYHEEQRLEDSSRSLESYGVRPGAELSAVAAVRVRVNIYDKATVPTGKKGSTDSGARNLPIEGAEGGHEDTYDSYGRHQLWHQGNRLNDAQILYNYCSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDSDEIVSCELDFASVTPVTAAGVLTVTATTLLWAGYALMFGAPLGL 464
BLAST of jgi.p|Trimin1|350766 vs. uniprot
Match: A0A836CAM2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAM2_9STRA) HSP 1 Score: 1298 bits (3358), Expect = 0.000e+0 Identity = 1075/1075 (100.00%), Postives = 1075/1075 (100.00%), Query Frame = 1
Query: 1 MALDSADQEVLKRVIEEHLQQEQCRGNPFDEEQASADTGAPAAGSFGAYAEAAAAGPAAHTIAHEHPAERELARLREEHALALTREAALESTVAVLRRELEGAAVKGDLRLMEALLADVVERLRRSEEERARLQGVEAEAQALRDEVDCLRPAERRLAKVEDALARCRRRLEEAGDVQAQLKREXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVLARCLTAEAEAALVPGLRKSLEKARQAKAELELNDRELRAELAAAPAAAGSLXXXXXXXXXXXXXXXXXLAAVASQLKHGSAAAEAESHRLRDELSAAALHGGSGGGEAAAALGGGVSELNPAITEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXELARLRRHNAQLLSEADHNTAATVADLEARLDDAERLSTAYAETLREARSAVAETQAALSESRQRVAELXXXXXXXXXXXXXXXXXXXXXXXXXXXEEEVAAWTQRHAADTQQWRDTAAAAAXXXXXXXXXXXXALELSTAGWSARVSVIAGKLQETEAALAAEIQAKEQALAELCAERQGRAQQVCELQQELSEAIRLADERATVMADQHATEEKERAAELAAENLRNALLTAQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEELSNAXXXXXXXXXXXXXXXQRVQSECEALLAAAEQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAEAEATHRALQSAAXXXXXXXXXXXXXXXXXXETTRASGEEALAAEQERSRAELADLITRGRAAMAAAAARAQTALXXXXXXXXXXXXXXXXXXXXXXXAERERSALYAQAEDARRALAASGXXXXXXXXXXXATVAALRGEVEELAAENEALREALEGGGGYVGMQGATPNINSSSGGGSSGAYAEMVAQFELQRHRLAQEKRDVLLRCAAAEAAADAXXXXXADAEAEATTLRHSVTSLQLRCERVEHRANRRNDLAAAXXXXXXXXDTAHDAAAVAKSHRAPSALSAVAAPARVHVMSTGAAADGXXXXXXXXXXISAVDVSAAAAPTGLRSSNMGDKKPPVDFDAGSGDMLPTAEGRRPECAQS 3225
MALDSADQEVLKRVIEEHLQQEQCRGNPFDEEQASADTGAPAAGSFGAYAEAAAAGPAAHTIAHEHPAERELARLREEHALALTREAALESTVAVLRRELEGAAVKGDLRLMEALLADVVERLRRSEEERARLQGVEAEAQALRDEVDCLRPAERRLAKVEDALARCRRRLEEAGDVQAQLKREXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVLARCLTAEAEAALVPGLRKSLEKARQAKAELELNDRELRAELAAAPAAAGSLXXXXXXXXXXXXXXXXXLAAVASQLKHGSAAAEAESHRLRDELSAAALHGGSGGGEAAAALGGGVSELNPAITEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXELARLRRHNAQLLSEADHNTAATVADLEARLDDAERLSTAYAETLREARSAVAETQAALSESRQRVAELXXXXXXXXXXXXXXXXXXXXXXXXXXXEEEVAAWTQRHAADTQQWRDTAAAAAXXXXXXXXXXXXALELSTAGWSARVSVIAGKLQETEAALAAEIQAKEQALAELCAERQGRAQQVCELQQELSEAIRLADERATVMADQHATEEKERAAELAAENLRNALLTAQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEELSNAXXXXXXXXXXXXXXXQRVQSECEALLAAAEQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAEAEATHRALQSAAXXXXXXXXXXXXXXXXXXETTRASGEEALAAEQERSRAELADLITRGRAAMAAAAARAQTALXXXXXXXXXXXXXXXXXXXXXXXAERERSALYAQAEDARRALAASGXXXXXXXXXXXATVAALRGEVEELAAENEALREALEGGGGYVGMQGATPNINSSSGGGSSGAYAEMVAQFELQRHRLAQEKRDVLLRCAAAEAAADAXXXXXADAEAEATTLRHSVTSLQLRCERVEHRANRRNDLAAAXXXXXXXXDTAHDAAAVAKSHRAPSALSAVAAPARVHVMSTGAAADGXXXXXXXXXXISAVDVSAAAAPTGLRSSNMGDKKPPVDFDAGSGDMLPTAEGRRPECAQS
Sbjct: 1 MALDSADQEVLKRVIEEHLQQEQCRGNPFDEEQASADTGAPAAGSFGAYAEAAAAGPAAHTIAHEHPAERELARLREEHALALTREAALESTVAVLRRELEGAAVKGDLRLMEALLADVVERLRRSEEERARLQGVEAEAQALRDEVDCLRPAERRLAKVEDALARCRRRLEEAGDVQAQLKREXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVLARCLTAEAEAALVPGLRKSLEKARQAKAELELNDRELRAELAAAPAAAGSLXXXXXXXXXXXXXXXXXLAAVASQLKHGSAAAEAESHRLRDELSAAALHGGSGGGEAAAALGGGVSELNPAITEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXELARLRRHNAQLLSEADHNTAATVADLEARLDDAERLSTAYAETLREARSAVAETQAALSESRQRVAELXXXXXXXXXXXXXXXXXXXXXXXXXXXEEEVAAWTQRHAADTQQWRDTAAAAAXXXXXXXXXXXXALELSTAGWSARVSVIAGKLQETEAALAAEIQAKEQALAELCAERQGRAQQVCELQQELSEAIRLADERATVMADQHATEEKERAAELAAENLRNALLTAQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEELSNAXXXXXXXXXXXXXXXQRVQSECEALLAAAEQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAEAEATHRALQSAAXXXXXXXXXXXXXXXXXXETTRASGEEALAAEQERSRAELADLITRGRAAMAAAAARAQTALXXXXXXXXXXXXXXXXXXXXXXXAERERSALYAQAEDARRALAASGXXXXXXXXXXXATVAALRGEVEELAAENEALREALEGGGGYVGMQGATPNINSSSGGGSSGAYAEMVAQFELQRHRLAQEKRDVLLRCAAAEAAADAXXXXXADAEAEATTLRHSVTSLQLRCERVEHRANRRNDLAAAXXXXXXXXDTAHDAAAVAKSHRAPSALSAVAAPARVHVMSTGAAADGXXXXXXXXXXISAVDVSAAAAPTGLRSSNMGDKKPPVDFDAGSGDMLPTAEGRRPECAQS 1075 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|350766 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 1
BLAST of jgi.p|Trimin1|350766 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 1
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_12412 ID=mRNA_12412|Name=jgi.p|Trimin1|350766|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1395bp|location=Sequence derived from alignment at Contig_71:427544..431591- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGGATGCGGACGGCTTTGTGCTTGTGGACGCAAACGGTTATGCTACCGGback to top protein sequence of jgi.p|Trimin1|350766 >Trimin1|350766|estExt_Genemark1.C_Ctg_710047 ID=Trimin1|350766|estExt_Genemark1.C_Ctg_710047|Name=jgi.p|Trimin1|350766|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=465bp MDADGFVLVDANGYATGKTFGLSGRTASTSGKMPARIATASDTDSMSSSGback to top mRNA from alignment at Contig_71:427544..431591- Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_12412 ID=mRNA_12412|Name=jgi.p|Trimin1|350766|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=4048bp|location=Sequence derived from alignment at Contig_71:427544..431591- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_71:427544..431591- >mRNA_12412 ID=mRNA_12412|Name=jgi.p|Trimin1|350766|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1395bp|location=Sequence derived from alignment at Contig_71:427544..431591- (Tribonema minus UTEX_B_3156 )back to top |