mRNA_13200 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|352254
Unique NamemRNA_13200
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|352254 vs. uniprot
Match: A0A835ZET9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZET9_9STRA)

HSP 1 Score: 313 bits (801), Expect = 5.320e-105
Identity = 167/167 (100.00%), Postives = 167/167 (100.00%), Query Frame = 1 
Query:    1 MLSRQQRYRRLRHNNRPRSGASPDYSDDTGYLINDRAYTTPSPTSTEADGSSHPSDTALLQGLVLTFVAVATVSGAVATMLGLCTRDCCGRRGGYTSLDGRGNAIRRAPLRIRAVSASALLVLNKKGVLQESRLRSFGSAPNLSAILEVADSDMDDEEAVIETGDGA 501
            MLSRQQRYRRLRHNNRPRSGASPDYSDDTGYLINDRAYTTPSPTSTEADGSSHPSDTALLQGLVLTFVAVATVSGAVATMLGLCTRDCCGRRGGYTSLDGRGNAIRRAPLRIRAVSASALLVLNKKGVLQESRLRSFGSAPNLSAILEVADSDMDDEEAVIETGDGA
Sbjct:    1 MLSRQQRYRRLRHNNRPRSGASPDYSDDTGYLINDRAYTTPSPTSTEADGSSHPSDTALLQGLVLTFVAVATVSGAVATMLGLCTRDCCGRRGGYTSLDGRGNAIRRAPLRIRAVSASALLVLNKKGVLQESRLRSFGSAPNLSAILEVADSDMDDEEAVIETGDGA 167
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BLAST of jgi.p|Trimin1|352254 vs. uniprot
Match: A0A835YSK1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSK1_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 9.830e-13
Identity = 66/167 (39.52%), Postives = 90/167 (53.89%), Query Frame = 1 
Query:   67 PDYSDDTGYLINDRAYTTPSPTSTEADGSSHPSDTALLQGLV----LTFVAVATVSGAVATMLGLCTRDCCGRRGGYTSL-DGRGNAIRRAP-LRIRAVSASALLV---------LNKKGVLQESRLRSFGSAPNLSAILEVADSDMDDEEAVIETG--DGA*APCA 516
            P ++D+     +D   +TPSPT+ E        D A ++G+V    L    + T SG VAT+ GLCTRD   +  GY S+ +  G  + RA   R+R  SA ALL+             GV  E+R RSFGSAPNL+AI+E A+SD DD+    ++G  DG  A CA
Sbjct:   71 PAFTDEAPTATSDFTTSTPSPTADETTP-----DEAAIEGMVRGGLLLIAGIFTASGTVATLFGLCTRDASHK--GYQSITNSPGEGLTRAGGRRLRTRSAGALLLGAEGKVLHYATINGVTYETRPRSFGSAPNLTAIIEAANSDADDDSEYGDSGGGDGGDALCA 230
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|352254 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A835ZET9_9STRA5.320e-105100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YSK1_9STRA9.830e-1339.52Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_113contigContig_113:333553..335119 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|352254|estExt_Genemark1.C_Ctg_1130041
Hectar predicted targeting categorysignal anchor
TranscriptId352576
TrackFilteredModels1
ProteinId352254
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|352254gene_13200Tribonema minus UTEX_B_3156 geneContig_113 333553..335119 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_13200_2exon_13200_2Tribonema minus UTEX_B_3156 exonContig_113 333553..334460 -
exon_13200_1exon_13200_1Tribonema minus UTEX_B_3156 exonContig_113 335065..335119 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_13200UTR3_13200Tribonema minus UTEX_B_3156 three_prime_UTRContig_113 333553..334011 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_13200CDS_13200Tribonema minus UTEX_B_3156 CDSContig_113 335065..335119 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|352254Trimin1|352254|estExt_Genemark1.C_Ctg_1130041Tribonema minus UTEX_B_3156 polypeptideContig_113 334012..335119 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_13200 ID=mRNA_13200|Name=jgi.p|Trimin1|352254|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=963bp|location=Sequence derived from alignment at Contig_113:333553..335119- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCTCTCACGGCAGCAGCGATACCGGCGCCTCAGGCACAACAACCGGCC
TCGGAGCGGTGCCAGTCCCGACTACAGCGACGACACTGGCTACTTGATCA
ATGATCGAGCGTACACCACCCCCTCGCCCACCAGCACAGAAGCAGATGGC
AGCAGCCACCCGTCAGACACAGCTCTGCTGCAGGGCCTGGTGTTGACCTT
TGTGGCCGTGGCAACCGTTTCAGGGGCGGTGGCCACCATGCTCGGCCTCT
GCACGAGAGACTGCTGCGGCAGAAGAGGCGGCTACACCTCTCTAGACGGC
CGTGGCAATGCCATCAGGCGAGCCCCCCTGAGGATTCGAGCCGTCTCCGC
CAGTGCCCTGCTGGTTCTCAACAAGAAGGGAGTACTACAGGAGTCTCGGC
TGCGCTCGTTTGGCAGCGCCCCCAACCTCTCCGCAATTTTGGAGGTGGCC
GACAGCGATATGGACGACGAGGAGGCGGTCATCGAGACAGGAGATGGCGC
GTGAGCCCCCTGCGCGAATTTTTCGCTCAAGACAGCAGCACCCGGAGGGG
CGGACGCGGATGCAGCGGTGCATCTCTCAGAAGCTGCGCACACAGACTTA
CACAATGCTGATTGCCAACCGGCGCAATGGAGTGCTTGCTGGCACCGCCA
GCCACCGTGCTCCTGTGGCGAACGCACGGAGCCCCCAACGAGGCGCAGAG
TACAGCGAAAGTTCCCCACGCGCTGCAGCACGCAGCGGCCGCGGTTGTGG
GCAGAGGACACAAGCGGCGGCTACATCGGCAACGCAGTTGCAAGCGATGG
CGGCATTGGCTGTGCGCAGGCGGCAGGAGCGGCAGCAGCGGCGGCGGGAG
CAGCAGCAGCGGCGGACGCAGCAGCGGCACTGGCATCACGCAGCCGCAGA
CAGCAGTTAAAGCAACGCTCCGCACTGCTTCGCGCTCGCAGAGGCGCGCA
CCAGCAGCATGGC
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protein sequence of jgi.p|Trimin1|352254

>Trimin1|352254|estExt_Genemark1.C_Ctg_1130041 ID=Trimin1|352254|estExt_Genemark1.C_Ctg_1130041|Name=jgi.p|Trimin1|352254|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=168bp
MLSRQQRYRRLRHNNRPRSGASPDYSDDTGYLINDRAYTTPSPTSTEADG
SSHPSDTALLQGLVLTFVAVATVSGAVATMLGLCTRDCCGRRGGYTSLDG
RGNAIRRAPLRIRAVSASALLVLNKKGVLQESRLRSFGSAPNLSAILEVA
DSDMDDEEAVIETGDGA*
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mRNA from alignment at Contig_113:333553..335119-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_13200 ID=mRNA_13200|Name=jgi.p|Trimin1|352254|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1567bp|location=Sequence derived from alignment at Contig_113:333553..335119- (Tribonema minus UTEX_B_3156 )
ATGCTCTCACGGCAGCAGCGATACCGGCGCCTCAGGCACAACAACCGGCC
TCGGAGTGAGCCCAGAGTCCCCCTCCCCTCTTCGCGGAGGGCGGCGAGCT
GGCCAATGCCCACAGGCAGCCCACAGGCACAGATCGATGGCCCAGGAAGC
GTGGGCTTACGTACGCCCCTGCAGCAATTGCTCGTAGATGCAAACCACGA
CAGCGTCTCAGTTCATCCCTCCCCTGTTGCGCCATCATGGCGTCTATGAT
GTTGCCCTCCTCCAAGTCCAGCTCCTGCGGTGTGGCGCCCTTGACATGGG
CCTCTTTCACCTTCACTTTGGTAGGATTGTATCCCCGCCTGATCCCTCAC
TCTAATGGTGATGGCCTCGCTGAACGGCTTCTGATACTGGCCCTCTGGTC
CTCCTGGTCCTCCGATCAGATCCAGCGATACTTCAACTCGAAGTTTCAGT
TTTCAACTTGTTGAAGTTTTTGAGGTGCCGAGAAACAGAAAAGCATGGTC
TGCCGCTGTCACTGTCAGCTGCCTTTCAGCACTTGAACACATCGCAGCAG
CAGCGGCGGTGGCGCAAACAGAGCTTCGGGGCCTGCTGTACACCCATGTG
TCCTTGCCGCCTTGGGCTTTTTCTCGCTGCTGCCGTCGCCGCTGCTGCTG
CTGCGCAAGGCGGTGCCAGTCCCGACTACAGCGACGACACTGGCTACTTG
ATCAATGATCGAGCGTACACCACCCCCTCGCCCACCAGCACAGAAGCAGA
TGGCAGCAGCCACCCGTCAGACACAGCTCTGCTGCAGGGCCTGGTGTTGA
CCTTTGTGGCCGTGGCAACCGTTTCAGGGGCGGTGGCCACCATGCTCGGC
CTCTGCACGAGAGACTGCTGCGGCAGAAGAGGCGGCTACACCTCTCTAGA
CGGCCGTGGCAATGCCATCAGGCGAGCCCCCCTGAGGATTCGAGCCGTCT
CCGCCAGTGCCCTGCTGGTTCTCAACAAGAAGGGAGTACTACAGGAGTCT
CGGCTGCGCTCGTTTGGCAGCGCCCCCAACCTCTCCGCAATTTTGGAGGT
GGCCGACAGCGATATGGACGACGAGGAGGCGGTCATCGAGACAGGAGATG
GCGCGTGAGCCCCCTGCGCGAATTTTTCGCTCAAGACAGCAGCACCCGGA
GGGGCGGACGCGGATGCAGCGGTGCATCTCTCAGAAGCTGCGCACACAGA
CTTACACAATGCTGATTGCCAACCGGCGCAATGGAGTGCTTGCTGGCACC
GCCAGCCACCGTGCTCCTGTGGCGAACGCACGGAGCCCCCAACGAGGCGC
AGAGTACAGCGAAAGTTCCCCACGCGCTGCAGCACGCAGCGGCCGCGGTT
GTGGGCAGAGGACACAAGCGGCGGCTACATCGGCAACGCAGTTGCAAGCG
ATGGCGGCATTGGCTGTGCGCAGGCGGCAGGAGCGGCAGCAGCGGCGGCG
GGAGCAGCAGCAGCGGCGGACGCAGCAGCGGCACTGGCATCACGCAGCCG
CAGACAGCAGTTAAAGCAACGCTCCGCACTGCTTCGCGCTCGCAGAGGCG
CGCACCAGCAGCATGGC
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Coding sequence (CDS) from alignment at Contig_113:333553..335119-

>mRNA_13200 ID=mRNA_13200|Name=jgi.p|Trimin1|352254|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=504bp|location=Sequence derived from alignment at Contig_113:333553..335119- (Tribonema minus UTEX_B_3156 )
ATGCTCTCACGGCAGCAGCGATACCGGCGCCTCAGGCACAACAACCGGCC
TCGGAGCGGTGCCAGTCCCGACTACAGCGACGACACTGGCTACTTGATCA
ATGATCGAGCGTACACCACCCCCTCGCCCACCAGCACAGAAGCAGATGGC
AGCAGCCACCCGTCAGACACAGCTCTGCTGCAGGGCCTGGTGTTGACCTT
TGTGGCCGTGGCAACCGTTTCAGGGGCGGTGGCCACCATGCTCGGCCTCT
GCACGAGAGACTGCTGCGGCAGAAGAGGCGGCTACACCTCTCTAGACGGC
CGTGGCAATGCCATCAGGCGAGCCCCCCTGAGGATTCGAGCCGTCTCCGC
CAGTGCCCTGCTGGTTCTCAACAAGAAGGGAGTACTACAGGAGTCTCGGC
TGCGCTCGTTTGGCAGCGCCCCCAACCTCTCCGCAATTTTGGAGGTGGCC
GACAGCGATATGGACGACGAGGAGGCGGTCATCGAGACAGGAGATGGCGC
GTGA
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