Trimin1|352254|estExt_Genemark1.C_Ctg_1130041 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	jgi.p\|Trimin1\|352254
Unique Name	Trimin1\|352254\|estExt_Genemark1.C_Ctg_1130041
Type	polypeptide
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length	168

Homology

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BLAST of jgi.p|Trimin1|352254 vs. uniprot
Match: A0A835ZET9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZET9_9STRA)

HSP 1 Score: 313 bits (802), Expect = 1.050e-107
Identity = 167/167 (100.00%), Postives = 167/167 (100.00%), Query Frame = 0

Query:    1 MLSRQQRYRRLRHNNRPRSGASPDYSDDTGYLINDRAYTTPSPTSTEADGSSHPSDTALLQGLVLTFVAVATVSGAVATMLGLCTRDCCGRRGGYTSLDGRGNAIRRAPLRIRAVSASALLVLNKKGVLQESRLRSFGSAPNLSAILEVADSDMDDEEAVIETGDGA 167
            MLSRQQRYRRLRHNNRPRSGASPDYSDDTGYLINDRAYTTPSPTSTEADGSSHPSDTALLQGLVLTFVAVATVSGAVATMLGLCTRDCCGRRGGYTSLDGRGNAIRRAPLRIRAVSASALLVLNKKGVLQESRLRSFGSAPNLSAILEVADSDMDDEEAVIETGDGA
Sbjct:    1 MLSRQQRYRRLRHNNRPRSGASPDYSDDTGYLINDRAYTTPSPTSTEADGSSHPSDTALLQGLVLTFVAVATVSGAVATMLGLCTRDCCGRRGGYTSLDGRGNAIRRAPLRIRAVSASALLVLNKKGVLQESRLRSFGSAPNLSAILEVADSDMDDEEAVIETGDGA 167

[Close]

BLAST of jgi.p|Trimin1|352254 vs. uniprot
Match: A0A835YSK1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSK1_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 6.970e-14
Identity = 62/159 (38.99%), Postives = 86/159 (54.09%), Query Frame = 0

Query:   23 PDYSDDTGYLINDRAYTTPSPTSTEADGSSHPSDTALLQGLV----LTFVAVATVSGAVATMLGLCTRDCCGRRGGYTSL-DGRGNAIRRAP-LRIRAVSASALLV---------LNKKGVLQESRLRSFGSAPNLSAILEVADSDMDDEEAVIETGDG 166
            P ++D+     +D   +TPSPT+ E        D A ++G+V    L    + T SG VAT+ GLCTRD   +  GY S+ +  G  + RA   R+R  SA ALL+             GV  E+R RSFGSAPNL+AI+E A+SD DD+    ++G G
Sbjct:   71 PAFTDEAPTATSDFTTSTPSPTADETTP-----DEAAIEGMVRGGLLLIAGIFTASGTVATLFGLCTRDASHK--GYQSITNSPGEGLTRAGGRRLRTRSAGALLLGAEGKVLHYATINGVTYETRPRSFGSAPNLTAIIEAANSDADDDSEYGDSGGG 222

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|352254 vs. uniprot

BLAST of jgi.p|Trimin1|352254 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A835ZET9_9STRA	1.050e-107	100.00	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
A0A835YSK1_9STRA	6.970e-14	38.99	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 33..53
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..53
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..16

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_113	contig	Contig_113:334012..335119 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|352254	mRNA_13200	Tribonema minus UTEX_B_3156	mRNA	Contig_113 333553..335119 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Trimin1|352254|estExt_Genemark1.C_Ctg_1130041 ID=Trimin1|352254|estExt_Genemark1.C_Ctg_1130041|Name=jgi.p|Trimin1|352254|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=168bp
MLSRQQRYRRLRHNNRPRSGASPDYSDDTGYLINDRAYTTPSPTSTEADG
SSHPSDTALLQGLVLTFVAVATVSGAVATMLGLCTRDCCGRRGGYTSLDG
RGNAIRRAPLRIRAVSASALLVLNKKGVLQESRLRSFGSAPNLSAILEVA
DSDMDDEEAVIETGDGA*