mRNA_10855 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|170200
Unique NamemRNA_10855
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|170200 vs. uniprot
Match: A0A835YVC6_9STRA (Fibronectin type III n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVC6_9STRA)

HSP 1 Score: 311 bits (797), Expect = 7.580e-107
Identity = 170/170 (100.00%), Postives = 170/170 (100.00%), Query Frame = 1
Query:    1 VTWTAPASNNAAISQFRVAYQQAGTSTVNNATSVDGNTLTLEVTGLAVAQNYTFQVFATNAAGEGAGSAGSDNVFIFPAVPGAPTGLSATAMSPTTVGLSWTAPVSPGHVVTSYVVEVKAAADSDTSYTAISDTITGTTVAATGLAEGTSYLFRVKTINQSGESDSAVHP 510
            VTWTAPASNNAAISQFRVAYQQAGTSTVNNATSVDGNTLTLEVTGLAVAQNYTFQVFATNAAGEGAGSAGSDNVFIFPAVPGAPTGLSATAMSPTTVGLSWTAPVSPGHVVTSYVVEVKAAADSDTSYTAISDTITGTTVAATGLAEGTSYLFRVKTINQSGESDSAVHP
Sbjct:    1 VTWTAPASNNAAISQFRVAYQQAGTSTVNNATSVDGNTLTLEVTGLAVAQNYTFQVFATNAAGEGAGSAGSDNVFIFPAVPGAPTGLSATAMSPTTVGLSWTAPVSPGHVVTSYVVEVKAAADSDTSYTAISDTITGTTVAATGLAEGTSYLFRVKTINQSGESDSAVHP 170          
BLAST of jgi.p|Trimin1|170200 vs. uniprot
Match: A0A836CBS6_9STRA (Fibronectin type-III domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBS6_9STRA)

HSP 1 Score: 126 bits (316), Expect = 5.670e-35
Identity = 68/70 (97.14%), Postives = 68/70 (97.14%), Query Frame = 1
Query:  274 MSPTTVGLSWTAPVSPGHVVTSYVVEVKAAADSDTSYTAISDTITGTTVAATGLAEGTSYLFRVKTINQS 483
            MSPTTVGLSWTAPVSPGHVVTSYVVEVKAAADSDTSY AISDTITGTTV ATGLAEGTSYLFRVKTINQS
Sbjct:    1 MSPTTVGLSWTAPVSPGHVVTSYVVEVKAAADSDTSYAAISDTITGTTVTATGLAEGTSYLFRVKTINQS 70          
BLAST of jgi.p|Trimin1|170200 vs. uniprot
Match: A0A835YKP8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKP8_9STRA)

HSP 1 Score: 122 bits (307), Expect = 3.390e-29
Identity = 66/68 (97.06%), Postives = 66/68 (97.06%), Query Frame = 1
Query:  274 MSPTTVGLSWTAPVSPGHVVTSYVVEVKAAADSDTSYTAISDTITGTTVAATGLAEGTSYLFRVKTIN 477
            MSPTTVGLSWTAPVSPGHVVTSYVVEVKAAADSDTSY AISDTITGTTV ATGLAEGTSYLFRVKTIN
Sbjct:    1 MSPTTVGLSWTAPVSPGHVVTSYVVEVKAAADSDTSYAAISDTITGTTVTATGLAEGTSYLFRVKTIN 68          
BLAST of jgi.p|Trimin1|170200 vs. uniprot
Match: A0A835YKZ0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKZ0_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 2.640e-16
Identity = 42/45 (93.33%), Postives = 43/45 (95.56%), Query Frame = 1
Query:  349 EVKAAADSDTSYTAISDTITGTTVAATGLAEGTSYLFRVKTINQS 483
            +VKAAADSDTSY AISDTITGTTV ATGLAEGTSYLFRVKTINQS
Sbjct:    7 QVKAAADSDTSYAAISDTITGTTVTATGLAEGTSYLFRVKTINQS 51          
BLAST of jgi.p|Trimin1|170200 vs. uniprot
Match: A0A6I3FBP8_9ACTN (BspA family leucine-rich repeat surface protein (Fragment) n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A6I3FBP8_9ACTN)

HSP 1 Score: 79.3 bits (194), Expect = 4.840e-14
Identity = 62/170 (36.47%), Postives = 81/170 (47.65%), Query Frame = 1
Query:    1 VTWTAPASNNAAISQFRVAYQQAGTSTVNNATSVDGNTLTLEVTGLAVAQNYTFQVFATNAAGEGAGSAGSDNVFIF--PAVPGAPTGLSATAMSPTTVGLSWTAPVSPGHVVTSYVVEVKAAADSDTSYTAISDTITGTTVAATGLAEGTSYLFRVKTINQSGESDSAV 504
            V W+APA+N A I+ + V     G ST    +      LT +VTGLA    YTF++ A+N  G GA S  S +V     P  P  PT  +  A     V ++W AP + G  +T Y+V   AA       T +    TG T    GLA GTSY FRVK  N  G   ++ 
Sbjct: 3126 VNWSAPAANGAPITGYVVTAYAGGVSTGRTCSPSPATGLTCDVTGLANGTAYTFKLVASNLNGPGAESNASGSVTPLGAPEAPAVPTTKAGNAK----VTVTWAAPANGGSAITGYLVTTYAAGSVVAGKTCVPTPATGLTCDVAGLANGTSYTFRVKATNAIGTGSNSA 3291          
BLAST of jgi.p|Trimin1|170200 vs. uniprot
Match: A0A4P5X8G7_9BACT (Uncharacterized protein n=1 Tax=Planctomycetia bacterium TaxID=2052181 RepID=A0A4P5X8G7_9BACT)

HSP 1 Score: 75.9 bits (185), Expect = 7.760e-13
Identity = 62/163 (38.04%), Postives = 83/163 (50.92%), Query Frame = 1
Query:    1 VTWTAPASNNAAISQFRVAYQQAGTSTVNNATSVDGNTLTLEVTGLAVAQNYTFQVFATNAAGEGAGSAGSDNVFIFPAVPGAPTGLSATAMSPTTVGLSWTAPVSPGHV-VTSYVVEVKAAADSDTSYTAISDTITGTTVAATGLAEGTSYLFRVKTINQSG 486
            +TWTAPA+N +AI+ + V ++    +T +          +  VTGL     Y F+V A NA G    SA +  +     VPG PTG   T  + + V LSW AP S G   +T YVV+ K  A + T  T    T  GT+   TGL  GT YLFRV  +N +G
Sbjct: 3749 LTWTAPAANGSAITDYMVEFKTVAAATWSTFADGTSTATSATVTGLTNGTAYLFRVKAVNAVGASVESAEAGPITPR-TVPGIPTGFVVTPQN-SQVALSWAAPTSDGGAPITDYVVQFKTPA-APTWSTFDDGTSAGTSATVTGLTNGTPYLFRVAAVNVAG 3908          
BLAST of jgi.p|Trimin1|170200 vs. uniprot
Match: A0A419G088_9BACT (Fibronectin type III domain-containing protein n=1 Tax=Candidatus Parcubacteria bacterium TaxID=2762014 RepID=A0A419G088_9BACT)

HSP 1 Score: 73.9 bits (180), Expect = 3.340e-12
Identity = 65/175 (37.14%), Postives = 97/175 (55.43%), Query Frame = 1
Query:    7 WTAPASNNA-AISQFRVAYQQAGTSTVNNATSVDGNT-LTLEVTGLAVAQNYTFQVFATNAAGEGAGSAGSDNVFIFPA------VPGAPTGLSATAMSPTTVGLSWTAPVSPGH-VVTSYVVEVKAAADSDTSYTAISDT-ITGTTVAATGLAEGTSYLFRVKTINQSGESDSA 501
            W+AP++N    I+ +++ Y+  G+ + +   S  G+T  T   TGL   Q Y ++V+A  + G       S   F  P        P APT LSATA+SPT + LSWT P + G  V+T Y +EVK+ + S T  T +S+T  T TT +  GLA GT+Y ++V  IN +G S ++
Sbjct:  150 WSAPSNNGGYPITGYKIEYR-IGSGSYSTLVSDTGSTSTTFSHTGLTTNQAYLYRVYAITSFGTSEDP--SPEAFAQPKSTSTLNTPSAPTNLSATAVSPTQISLSWTTPSNNGGAVITGYKIEVKSGSGSYT--TLVSNTQSTTTTYSHAGLATGTAYTYKVSAINSAGASTAS 319          
BLAST of jgi.p|Trimin1|170200 vs. uniprot
Match: A0A6I3N1U6_9ACTN (Uncharacterized protein (Fragment) n=2 Tax=root TaxID=1 RepID=A0A6I3N1U6_9ACTN)

HSP 1 Score: 71.6 bits (174), Expect = 2.150e-11
Identity = 66/166 (39.76%), Postives = 88/166 (53.01%), Query Frame = 1
Query:    1 VTWTAPASNNAAISQFRVAYQQAGT-STVNNATSVDGNTLTLEVTGLAVAQNYTFQVFATNAAGEGAGSAGSDNVFIFPAVPGAPTGLSATAMSPTTVGLSWTAPV-SPGHVVTSYVVEVKAAADSDTSYTAISDTITGTTVAATGLAEGTSYLFRVKTINQSGES 492
            VTWTAP+SN A I+ + V Y   GT +T N+ TS    T +  V GL     YTF+V A N AG  A S  S  V     VP  PT  +A   +   V +SWTAP  + G+ ++ Y V+      + TS+ A S   T T+   TGL +GTSY F+V  +N +G S
Sbjct:  218 VTWTAPSSNGANITDYIVQYCTGGTCTTYNDGTSA---TASASVAGLVKGTPYTFKVAAVNTAGTSAYSLPSSAVTPR-TVPEPPTDATAVVNNTGGVVVSWTAPTDNGGNAISDYTVQ-SCVGGTCTSF-AHSPASTATSQTVTGLTKGTSYTFKVAAVNAAGTS 377          
BLAST of jgi.p|Trimin1|170200 vs. uniprot
Match: A0A521K945_9CHLR (Fibronectin type III domain-containing protein (Fragment) n=1 Tax=Dehalococcoidia bacterium TaxID=2026734 RepID=A0A521K945_9CHLR)

HSP 1 Score: 68.9 bits (167), Expect = 5.860e-11
Identity = 59/170 (34.71%), Postives = 89/170 (52.35%), Query Frame = 1
Query:    7 WTAPASNN-AAISQFRVAYQQAGTSTVNNATSVDGNTLTLEVTGLAVAQNYTFQVFATNAAGEGAGSAGSDNVFIFPA------VPGAPTGLSATAMSPTTVGLSWTAPV-SPGHVVTSYVVEVKAAADSDTSYTAISDTITGTTVAATGLAEGTSYLFRVKTINQSGES 492
            WTAPAS+  +AI+ +++ Y+    S  +      G   T   TGL     YT+++ A N+ G    S  S +V + P        PGAPTGL+ATA SPT + LSWTAP  + G+ +T Y ++ K  ++S     A + + T T+ +  G+  G  Y++RV TI     S
Sbjct:   65 WTAPASDGGSAITGYKIEYKSG--SFYSTLVENTGAVTTYSHTGLTTGTAYTYKISAINSLGT---STASSDVSVTPTSSSAAVAPGAPTGLTATAPSPTKIDLSWTAPADNGGYPITGYKIQYKTGSNSYADLVANTASTT-TSFSHDGITAGQLYIYRVYTITSFATS 228          
BLAST of jgi.p|Trimin1|170200 vs. uniprot
Match: A0A6C0FTA5_9BACL (Leucine-rich repeat protein n=1 Tax=Paenibacillus lycopersici TaxID=2704462 RepID=A0A6C0FTA5_9BACL)

HSP 1 Score: 70.1 bits (170), Expect = 7.430e-11
Identity = 70/168 (41.67%), Postives = 92/168 (54.76%), Query Frame = 1
Query:    1 VTWTAPASNN-AAISQFRVAYQQAGTSTVNNATSVDGNTLTLEVTGLAVAQNYTFQVFATNAAGEGAGSAGSDNVF-IFP-AVPGAPTGLSATAMSPTTVGLSWTAPVSPG-HVVTSYVVEVKAAADSDTSYTAISDTITGTTVAATGLAEGTSYLFRVKTINQSGES 492
            V +TAPAS+  +AI+ + V      TS+  N T        + VTGL     YTFQV ATN+AGE A SA S +V  + P  VP APTG++ATA + T   +S+TAP S G   +T Y V       ++TS TA   T+TG       L  GT+Y F+V   N +GES
Sbjct:  821 VRFTAPASDGGSAITLYTV------TSSPGNVTETSTTAGPITVTGLTNGTAYTFQVTATNSAGESAASAVSASVTPVAPIGVPSAPTGVTATAGNGTAT-VSFTAPASDGGSAITLYTVTSSPGNVTETSTTAGPITVTG-------LTNGTAYTFQVTATNSAGES 974          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|170200 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YVC6_9STRA7.580e-107100.00Fibronectin type III n=1 Tax=Tribonema minus TaxID... [more]
A0A836CBS6_9STRA5.670e-3597.14Fibronectin type-III domain-containing protein n=1... [more]
A0A835YKP8_9STRA3.390e-2997.06Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YKZ0_9STRA2.640e-1693.33Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6I3FBP8_9ACTN4.840e-1436.47BspA family leucine-rich repeat surface protein (F... [more]
A0A4P5X8G7_9BACT7.760e-1338.04Uncharacterized protein n=1 Tax=Planctomycetia bac... [more]
A0A419G088_9BACT3.340e-1237.14Fibronectin type III domain-containing protein n=1... [more]
A0A6I3N1U6_9ACTN2.150e-1139.76Uncharacterized protein (Fragment) n=2 Tax=root Ta... [more]
A0A521K945_9CHLR5.860e-1134.71Fibronectin type III domain-containing protein (Fr... [more]
A0A6C0FTA5_9BACL7.430e-1141.67Leucine-rich repeat protein n=1 Tax=Paenibacillus ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_70contigContig_70:131595..132107 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|170200|e_gw1.70.61.1
Descriptioncellulase activity
COG categoryM
Max annot lvl201174|Actinobacteria
EggNOG OGsCOG1361@1|root,COG3468@1|root,COG4719@1|root,COG1361@2|Bacteria,COG3468@2|Bacteria,COG4719@2|Bacteria,2I8F1@201174|Actinobacteria
Evalue8.98e-18
Seed ortholog326424.FRAAL6628
Hectar predicted targeting categoryother localisation
TranscriptId170522
TrackFilteredModels1
ProteinId170200
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|170200gene_10855Tribonema minus UTEX_B_3156 geneContig_70 131595..132107 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_10855_1exon_10855_1Tribonema minus UTEX_B_3156 exonContig_70 131595..132107 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_10855CDS_10855Tribonema minus UTEX_B_3156 CDSContig_70 131595..132107 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|170200Trimin1|170200|e_gw1.70.61.1Tribonema minus UTEX_B_3156 polypeptideContig_70 131595..132107 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_10855 ID=mRNA_10855|Name=jgi.p|Trimin1|170200|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=513bp|location=Sequence derived from alignment at Contig_70:131595..132107- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GTAACCTGGACAGCACCTGCCAGCAACAATGCAGCCATCTCACAGTTCCG
CGTAGCATACCAGCAAGCTGGCACCTCCACAGTGAACAATGCTACCAGTG
TTGACGGCAATACATTGACACTGGAAGTGACGGGGCTGGCAGTAGCACAG
AACTACACATTTCAGGTATTTGCCACGAATGCGGCCGGGGAAGGCGCAGG
TAGCGCTGGTAGTGACAACGTGTTCATCTTTCCAGCAGTGCCGGGTGCGC
CAACCGGTCTGTCAGCAACTGCCATGTCCCCGACAACGGTTGGCCTTAGC
TGGACAGCACCTGTGTCACCTGGCCATGTGGTGACCAGCTATGTGGTGGA
GGTGAAGGCAGCTGCCGATAGCGACACCAGCTACACAGCCATCTCAGACA
CCATCACTGGAACTACAGTCGCCGCAACAGGCTTGGCAGAGGGCACATCA
TACCTGTTCCGTGTCAAGACCATCAATCAAAGCGGTGAGTCAGACTCTGC
AGTGCATCCTTGA
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protein sequence of jgi.p|Trimin1|170200

>Trimin1|170200|e_gw1.70.61.1 ID=Trimin1|170200|e_gw1.70.61.1|Name=jgi.p|Trimin1|170200|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=171bp
VTWTAPASNNAAISQFRVAYQQAGTSTVNNATSVDGNTLTLEVTGLAVAQ
NYTFQVFATNAAGEGAGSAGSDNVFIFPAVPGAPTGLSATAMSPTTVGLS
WTAPVSPGHVVTSYVVEVKAAADSDTSYTAISDTITGTTVAATGLAEGTS
YLFRVKTINQSGESDSAVHP*
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mRNA from alignment at Contig_70:131595..132107-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10855 ID=mRNA_10855|Name=jgi.p|Trimin1|170200|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=513bp|location=Sequence derived from alignment at Contig_70:131595..132107- (Tribonema minus UTEX_B_3156 )
GTAACCTGGACAGCACCTGCCAGCAACAATGCAGCCATCTCACAGTTCCG CGTAGCATACCAGCAAGCTGGCACCTCCACAGTGAACAATGCTACCAGTG TTGACGGCAATACATTGACACTGGAAGTGACGGGGCTGGCAGTAGCACAG AACTACACATTTCAGGTATTTGCCACGAATGCGGCCGGGGAAGGCGCAGG TAGCGCTGGTAGTGACAACGTGTTCATCTTTCCAGCAGTGCCGGGTGCGC CAACCGGTCTGTCAGCAACTGCCATGTCCCCGACAACGGTTGGCCTTAGC TGGACAGCACCTGTGTCACCTGGCCATGTGGTGACCAGCTATGTGGTGGA GGTGAAGGCAGCTGCCGATAGCGACACCAGCTACACAGCCATCTCAGACA CCATCACTGGAACTACAGTCGCCGCAACAGGCTTGGCAGAGGGCACATCA TACCTGTTCCGTGTCAAGACCATCAATCAAAGCGGTGAGTCAGACTCTGC AGTGCATCCTTGA
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Coding sequence (CDS) from alignment at Contig_70:131595..132107-

>mRNA_10855 ID=mRNA_10855|Name=jgi.p|Trimin1|170200|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=513bp|location=Sequence derived from alignment at Contig_70:131595..132107- (Tribonema minus UTEX_B_3156 )
GTAACCTGGACAGCACCTGCCAGCAACAATGCAGCCATCTCACAGTTCCG
CGTAGCATACCAGCAAGCTGGCACCTCCACAGTGAACAATGCTACCAGTG
TTGACGGCAATACATTGACACTGGAAGTGACGGGGCTGGCAGTAGCACAG
AACTACACATTTCAGGTATTTGCCACGAATGCGGCCGGGGAAGGCGCAGG
TAGCGCTGGTAGTGACAACGTGTTCATCTTTCCAGCAGTGCCGGGTGCGC
CAACCGGTCTGTCAGCAACTGCCATGTCCCCGACAACGGTTGGCCTTAGC
TGGACAGCACCTGTGTCACCTGGCCATGTGGTGACCAGCTATGTGGTGGA
GGTGAAGGCAGCTGCCGATAGCGACACCAGCTACACAGCCATCTCAGACA
CCATCACTGGAACTACAGTCGCCGCAACAGGCTTGGCAGAGGGCACATCA
TACCTGTTCCGTGTCAAGACCATCAATCAAAGCGGTGAGTCAGACTCTGC
AGTGCATCCTTGA
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