mRNA_10855 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|170200 vs. uniprot
Match: A0A835YVC6_9STRA (Fibronectin type III n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVC6_9STRA) HSP 1 Score: 311 bits (797), Expect = 7.580e-107 Identity = 170/170 (100.00%), Postives = 170/170 (100.00%), Query Frame = 1 Query: 1 VTWTAPASNNAAISQFRVAYQQAGTSTVNNATSVDGNTLTLEVTGLAVAQNYTFQVFATNAAGEGAGSAGSDNVFIFPAVPGAPTGLSATAMSPTTVGLSWTAPVSPGHVVTSYVVEVKAAADSDTSYTAISDTITGTTVAATGLAEGTSYLFRVKTINQSGESDSAVHP 510 VTWTAPASNNAAISQFRVAYQQAGTSTVNNATSVDGNTLTLEVTGLAVAQNYTFQVFATNAAGEGAGSAGSDNVFIFPAVPGAPTGLSATAMSPTTVGLSWTAPVSPGHVVTSYVVEVKAAADSDTSYTAISDTITGTTVAATGLAEGTSYLFRVKTINQSGESDSAVHP Sbjct: 1 VTWTAPASNNAAISQFRVAYQQAGTSTVNNATSVDGNTLTLEVTGLAVAQNYTFQVFATNAAGEGAGSAGSDNVFIFPAVPGAPTGLSATAMSPTTVGLSWTAPVSPGHVVTSYVVEVKAAADSDTSYTAISDTITGTTVAATGLAEGTSYLFRVKTINQSGESDSAVHP 170
BLAST of jgi.p|Trimin1|170200 vs. uniprot
Match: A0A836CBS6_9STRA (Fibronectin type-III domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBS6_9STRA) HSP 1 Score: 126 bits (316), Expect = 5.670e-35 Identity = 68/70 (97.14%), Postives = 68/70 (97.14%), Query Frame = 1 Query: 274 MSPTTVGLSWTAPVSPGHVVTSYVVEVKAAADSDTSYTAISDTITGTTVAATGLAEGTSYLFRVKTINQS 483 MSPTTVGLSWTAPVSPGHVVTSYVVEVKAAADSDTSY AISDTITGTTV ATGLAEGTSYLFRVKTINQS Sbjct: 1 MSPTTVGLSWTAPVSPGHVVTSYVVEVKAAADSDTSYAAISDTITGTTVTATGLAEGTSYLFRVKTINQS 70
BLAST of jgi.p|Trimin1|170200 vs. uniprot
Match: A0A835YKP8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKP8_9STRA) HSP 1 Score: 122 bits (307), Expect = 3.390e-29 Identity = 66/68 (97.06%), Postives = 66/68 (97.06%), Query Frame = 1 Query: 274 MSPTTVGLSWTAPVSPGHVVTSYVVEVKAAADSDTSYTAISDTITGTTVAATGLAEGTSYLFRVKTIN 477 MSPTTVGLSWTAPVSPGHVVTSYVVEVKAAADSDTSY AISDTITGTTV ATGLAEGTSYLFRVKTIN Sbjct: 1 MSPTTVGLSWTAPVSPGHVVTSYVVEVKAAADSDTSYAAISDTITGTTVTATGLAEGTSYLFRVKTIN 68
BLAST of jgi.p|Trimin1|170200 vs. uniprot
Match: A0A835YKZ0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKZ0_9STRA) HSP 1 Score: 78.2 bits (191), Expect = 2.640e-16 Identity = 42/45 (93.33%), Postives = 43/45 (95.56%), Query Frame = 1 Query: 349 EVKAAADSDTSYTAISDTITGTTVAATGLAEGTSYLFRVKTINQS 483 +VKAAADSDTSY AISDTITGTTV ATGLAEGTSYLFRVKTINQS Sbjct: 7 QVKAAADSDTSYAAISDTITGTTVTATGLAEGTSYLFRVKTINQS 51
BLAST of jgi.p|Trimin1|170200 vs. uniprot
Match: A0A6I3FBP8_9ACTN (BspA family leucine-rich repeat surface protein (Fragment) n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A6I3FBP8_9ACTN) HSP 1 Score: 79.3 bits (194), Expect = 4.840e-14 Identity = 62/170 (36.47%), Postives = 81/170 (47.65%), Query Frame = 1 Query: 1 VTWTAPASNNAAISQFRVAYQQAGTSTVNNATSVDGNTLTLEVTGLAVAQNYTFQVFATNAAGEGAGSAGSDNVFIF--PAVPGAPTGLSATAMSPTTVGLSWTAPVSPGHVVTSYVVEVKAAADSDTSYTAISDTITGTTVAATGLAEGTSYLFRVKTINQSGESDSAV 504 V W+APA+N A I+ + V G ST + LT +VTGLA YTF++ A+N G GA S S +V P P PT + A V ++W AP + G +T Y+V AA T + TG T GLA GTSY FRVK N G ++ Sbjct: 3126 VNWSAPAANGAPITGYVVTAYAGGVSTGRTCSPSPATGLTCDVTGLANGTAYTFKLVASNLNGPGAESNASGSVTPLGAPEAPAVPTTKAGNAK----VTVTWAAPANGGSAITGYLVTTYAAGSVVAGKTCVPTPATGLTCDVAGLANGTSYTFRVKATNAIGTGSNSA 3291
BLAST of jgi.p|Trimin1|170200 vs. uniprot
Match: A0A4P5X8G7_9BACT (Uncharacterized protein n=1 Tax=Planctomycetia bacterium TaxID=2052181 RepID=A0A4P5X8G7_9BACT) HSP 1 Score: 75.9 bits (185), Expect = 7.760e-13 Identity = 62/163 (38.04%), Postives = 83/163 (50.92%), Query Frame = 1 Query: 1 VTWTAPASNNAAISQFRVAYQQAGTSTVNNATSVDGNTLTLEVTGLAVAQNYTFQVFATNAAGEGAGSAGSDNVFIFPAVPGAPTGLSATAMSPTTVGLSWTAPVSPGHV-VTSYVVEVKAAADSDTSYTAISDTITGTTVAATGLAEGTSYLFRVKTINQSG 486 +TWTAPA+N +AI+ + V ++ +T + + VTGL Y F+V A NA G SA + + VPG PTG T + + V LSW AP S G +T YVV+ K A + T T T GT+ TGL GT YLFRV +N +G Sbjct: 3749 LTWTAPAANGSAITDYMVEFKTVAAATWSTFADGTSTATSATVTGLTNGTAYLFRVKAVNAVGASVESAEAGPITPR-TVPGIPTGFVVTPQN-SQVALSWAAPTSDGGAPITDYVVQFKTPA-APTWSTFDDGTSAGTSATVTGLTNGTPYLFRVAAVNVAG 3908
BLAST of jgi.p|Trimin1|170200 vs. uniprot
Match: A0A419G088_9BACT (Fibronectin type III domain-containing protein n=1 Tax=Candidatus Parcubacteria bacterium TaxID=2762014 RepID=A0A419G088_9BACT) HSP 1 Score: 73.9 bits (180), Expect = 3.340e-12 Identity = 65/175 (37.14%), Postives = 97/175 (55.43%), Query Frame = 1 Query: 7 WTAPASNNA-AISQFRVAYQQAGTSTVNNATSVDGNT-LTLEVTGLAVAQNYTFQVFATNAAGEGAGSAGSDNVFIFPA------VPGAPTGLSATAMSPTTVGLSWTAPVSPGH-VVTSYVVEVKAAADSDTSYTAISDT-ITGTTVAATGLAEGTSYLFRVKTINQSGESDSA 501 W+AP++N I+ +++ Y+ G+ + + S G+T T TGL Q Y ++V+A + G S F P P APT LSATA+SPT + LSWT P + G V+T Y +EVK+ + S T T +S+T T TT + GLA GT+Y ++V IN +G S ++ Sbjct: 150 WSAPSNNGGYPITGYKIEYR-IGSGSYSTLVSDTGSTSTTFSHTGLTTNQAYLYRVYAITSFGTSEDP--SPEAFAQPKSTSTLNTPSAPTNLSATAVSPTQISLSWTTPSNNGGAVITGYKIEVKSGSGSYT--TLVSNTQSTTTTYSHAGLATGTAYTYKVSAINSAGASTAS 319
BLAST of jgi.p|Trimin1|170200 vs. uniprot
Match: A0A6I3N1U6_9ACTN (Uncharacterized protein (Fragment) n=2 Tax=root TaxID=1 RepID=A0A6I3N1U6_9ACTN) HSP 1 Score: 71.6 bits (174), Expect = 2.150e-11 Identity = 66/166 (39.76%), Postives = 88/166 (53.01%), Query Frame = 1 Query: 1 VTWTAPASNNAAISQFRVAYQQAGT-STVNNATSVDGNTLTLEVTGLAVAQNYTFQVFATNAAGEGAGSAGSDNVFIFPAVPGAPTGLSATAMSPTTVGLSWTAPV-SPGHVVTSYVVEVKAAADSDTSYTAISDTITGTTVAATGLAEGTSYLFRVKTINQSGES 492 VTWTAP+SN A I+ + V Y GT +T N+ TS T + V GL YTF+V A N AG A S S V VP PT +A + V +SWTAP + G+ ++ Y V+ + TS+ A S T T+ TGL +GTSY F+V +N +G S Sbjct: 218 VTWTAPSSNGANITDYIVQYCTGGTCTTYNDGTSA---TASASVAGLVKGTPYTFKVAAVNTAGTSAYSLPSSAVTPR-TVPEPPTDATAVVNNTGGVVVSWTAPTDNGGNAISDYTVQ-SCVGGTCTSF-AHSPASTATSQTVTGLTKGTSYTFKVAAVNAAGTS 377
BLAST of jgi.p|Trimin1|170200 vs. uniprot
Match: A0A521K945_9CHLR (Fibronectin type III domain-containing protein (Fragment) n=1 Tax=Dehalococcoidia bacterium TaxID=2026734 RepID=A0A521K945_9CHLR) HSP 1 Score: 68.9 bits (167), Expect = 5.860e-11 Identity = 59/170 (34.71%), Postives = 89/170 (52.35%), Query Frame = 1 Query: 7 WTAPASNN-AAISQFRVAYQQAGTSTVNNATSVDGNTLTLEVTGLAVAQNYTFQVFATNAAGEGAGSAGSDNVFIFPA------VPGAPTGLSATAMSPTTVGLSWTAPV-SPGHVVTSYVVEVKAAADSDTSYTAISDTITGTTVAATGLAEGTSYLFRVKTINQSGES 492 WTAPAS+ +AI+ +++ Y+ S + G T TGL YT+++ A N+ G S S +V + P PGAPTGL+ATA SPT + LSWTAP + G+ +T Y ++ K ++S A + + T T+ + G+ G Y++RV TI S Sbjct: 65 WTAPASDGGSAITGYKIEYKSG--SFYSTLVENTGAVTTYSHTGLTTGTAYTYKISAINSLGT---STASSDVSVTPTSSSAAVAPGAPTGLTATAPSPTKIDLSWTAPADNGGYPITGYKIQYKTGSNSYADLVANTASTT-TSFSHDGITAGQLYIYRVYTITSFATS 228
BLAST of jgi.p|Trimin1|170200 vs. uniprot
Match: A0A6C0FTA5_9BACL (Leucine-rich repeat protein n=1 Tax=Paenibacillus lycopersici TaxID=2704462 RepID=A0A6C0FTA5_9BACL) HSP 1 Score: 70.1 bits (170), Expect = 7.430e-11 Identity = 70/168 (41.67%), Postives = 92/168 (54.76%), Query Frame = 1 Query: 1 VTWTAPASNN-AAISQFRVAYQQAGTSTVNNATSVDGNTLTLEVTGLAVAQNYTFQVFATNAAGEGAGSAGSDNVF-IFP-AVPGAPTGLSATAMSPTTVGLSWTAPVSPG-HVVTSYVVEVKAAADSDTSYTAISDTITGTTVAATGLAEGTSYLFRVKTINQSGES 492 V +TAPAS+ +AI+ + V TS+ N T + VTGL YTFQV ATN+AGE A SA S +V + P VP APTG++ATA + T +S+TAP S G +T Y V ++TS TA T+TG L GT+Y F+V N +GES Sbjct: 821 VRFTAPASDGGSAITLYTV------TSSPGNVTETSTTAGPITVTGLTNGTAYTFQVTATNSAGESAASAVSASVTPVAPIGVPSAPTGVTATAGNGTAT-VSFTAPASDGGSAITLYTVTSSPGNVTETSTTAGPITVTG-------LTNGTAYTFQVTATNSAGES 974 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|170200 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_10855 ID=mRNA_10855|Name=jgi.p|Trimin1|170200|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=513bp|location=Sequence derived from alignment at Contig_70:131595..132107- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. GTAACCTGGACAGCACCTGCCAGCAACAATGCAGCCATCTCACAGTTCCGback to top protein sequence of jgi.p|Trimin1|170200 >Trimin1|170200|e_gw1.70.61.1 ID=Trimin1|170200|e_gw1.70.61.1|Name=jgi.p|Trimin1|170200|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=171bp VTWTAPASNNAAISQFRVAYQQAGTSTVNNATSVDGNTLTLEVTGLAVAQback to top mRNA from alignment at Contig_70:131595..132107- Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_10855 ID=mRNA_10855|Name=jgi.p|Trimin1|170200|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=513bp|location=Sequence derived from alignment at Contig_70:131595..132107- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_70:131595..132107- >mRNA_10855 ID=mRNA_10855|Name=jgi.p|Trimin1|170200|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=513bp|location=Sequence derived from alignment at Contig_70:131595..132107- (Tribonema minus UTEX_B_3156 )back to top |