Trimin1|350626|estExt_Genemark1.C_Ctg_680016 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|350626
Unique NameTrimin1|350626|estExt_Genemark1.C_Ctg_680016
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length121
Homology
BLAST of jgi.p|Trimin1|350626 vs. uniprot
Match: A0A836CA84_9STRA (Nuclear transport factor 2 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CA84_9STRA)

HSP 1 Score: 240 bits (612), Expect = 2.930e-80
Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 0
Query:    1 MSAEEVAKAFAQHFYQTFTANAQSLAPLYNDRSMLTFEGQASVGAQAIIQKYVSIGKLAFDQNTLDVQPSVDANAICIHITGKVKIDSNNPIHYTQFFQLVASGPSQYYVHNDIFRLVYA 120
            MSAEEVAKAFAQHFYQTFTANAQSLAPLYNDRSMLTFEGQASVGAQAIIQKYVSIGKLAFDQNTLDVQPSVDANAICIHITGKVKIDSNNPIHYTQFFQLVASGPSQYYVHNDIFRLVYA
Sbjct:    1 MSAEEVAKAFAQHFYQTFTANAQSLAPLYNDRSMLTFEGQASVGAQAIIQKYVSIGKLAFDQNTLDVQPSVDANAICIHITGKVKIDSNNPIHYTQFFQLVASGPSQYYVHNDIFRLVYA 120          
BLAST of jgi.p|Trimin1|350626 vs. uniprot
Match: A0A7S4MNW5_9STRA (Nuclear transport factor 2 n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4MNW5_9STRA)

HSP 1 Score: 143 bits (361), Expect = 5.460e-42
Identity = 70/119 (58.82%), Postives = 87/119 (73.11%), Query Frame = 0
Query:    1 MSAEEVAKAFAQHFYQTFTANAQSLAPLYNDRSMLTFEGQASVGAQAIIQKYVSIGKLAFDQNTLDVQPSVDANAICIHITGKVKIDSNNPIHYTQFFQLVASGPSQYYVHNDIFRLVY 119
            MSAEEVAKAF  HFYQTF A AQ LA LYN++SMLTFEGQ   GAQA+I K    G +     ++DVQPS + +AI I +TG +KI  +NP+H+ + FQLV++GP  YYVHND+FRL Y
Sbjct:    1 MSAEEVAKAFTAHFYQTFDAGAQGLAGLYNEQSMLTFEGQQHQGAQAVIAKLQGCGPVQHVVKSMDVQPSSNQSAILIFVTGTIKIGGDNPLHFCEMFQLVSTGPGAYYVHNDVFRLNY 119          
BLAST of jgi.p|Trimin1|350626 vs. uniprot
Match: A0A7S3L787_9STRA (Nuclear transport factor 2 (Fragment) n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3L787_9STRA)

HSP 1 Score: 142 bits (358), Expect = 1.610e-41
Identity = 67/119 (56.30%), Postives = 87/119 (73.11%), Query Frame = 0
Query:    1 MSAEEVAKAFAQHFYQTFTANAQSLAPLYNDRSMLTFEGQASVGAQAIIQKYVSIGKLAFDQNTLDVQPSVDANAICIHITGKVKIDSNNPIHYTQFFQLVASGPSQYYVHNDIFRLVY 119
            MSAEEVAKAF QHFY  + +N   LA LY+  SMLTFEGQ  +G++AII K  S+GK+  D  ++DVQPS +  A+ I +TG V+ID  NP+H+ + FQLV++GP  YYVHND+FRL Y
Sbjct:    2 MSAEEVAKAFVQHFYGAYASNPAQLASLYSPNSMLTFEGQQHMGSEAIIGKLTSVGKVQHDVKSMDVQPSQNPQAMIIFVTGTVRIDGGNPLHFCEVFQLVSTGPGAYYVHNDVFRLNY 120          
BLAST of jgi.p|Trimin1|350626 vs. uniprot
Match: A0A7S1ZBV8_TRICV (Nuclear transport factor 2 n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZBV8_TRICV)

HSP 1 Score: 138 bits (348), Expect = 5.180e-40
Identity = 67/119 (56.30%), Postives = 85/119 (71.43%), Query Frame = 0
Query:    1 MSAEEVAKAFAQHFYQTFTANAQSLAPLYNDRSMLTFEGQASVGAQAIIQKYVSIGKLAFDQNTLDVQPSVDANAICIHITGKVKIDSNNPIHYTQFFQLVASGPSQYYVHNDIFRLVY 119
            MSAEEVAKAF QHFY TF A+A  LA LYN +SMLTFEGQ   G++AI+ K    G +     ++DVQPS   NAI I +TG ++I  +NP+H+ + FQLV++GP  YYVHND+FRL Y
Sbjct:    1 MSAEEVAKAFVQHFYTTFDASADGLASLYNAQSMLTFEGQQHQGSEAIVAKLRGCGPVKHVAKSMDVQPSSSQNAILIFVTGTIQIGGDNPLHFCEMFQLVSTGPGAYYVHNDVFRLNY 119          
BLAST of jgi.p|Trimin1|350626 vs. uniprot
Match: A0A448ZHJ1_9STRA (Nuclear transport factor 2 n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZHJ1_9STRA)

HSP 1 Score: 138 bits (347), Expect = 7.590e-40
Identity = 64/120 (53.33%), Postives = 88/120 (73.33%), Query Frame = 0
Query:    1 MSAEEVAKAFAQHFYQTFTANAQSLAPLYNDRSMLTFEGQASVGAQAIIQKYVSIGKLAFDQNTLDVQPSVDANAICIHITGKVKIDS-NNPIHYTQFFQLVASGPSQYYVHNDIFRLVY 119
            MSAEEVAKAF  H+YQTF +N + L  L+ND+SM+TFEG   +GA  I++K  S G+   +  T+D+QP++D  +I I +TG ++I    NP+H+++FF LV+SGP QYYVHNDIFRL Y
Sbjct:    1 MSAEEVAKAFVGHYYQTFDSNVEGLRGLFNDKSMMTFEGNQLMGASPILEKLKSFGQTKHNAKTMDIQPAIDGASIVIFVTGSIEIGGPGNPLHFSEFFYLVSSGPGQYYVHNDIFRLNY 120          
BLAST of jgi.p|Trimin1|350626 vs. uniprot
Match: B8C3C1_THAPS (Nuclear transport factor 2 n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C3C1_THAPS)

HSP 1 Score: 137 bits (346), Expect = 1.040e-39
Identity = 66/119 (55.46%), Postives = 82/119 (68.91%), Query Frame = 0
Query:    1 MSAEEVAKAFAQHFYQTFTANAQSLAPLYNDRSMLTFEGQASVGAQAIIQKYVSIGKLAFDQNTLDVQPSVDANAICIHITGKVKIDSNNPIHYTQFFQLVASGPSQYYVHNDIFRLVY 119
            MSAEEVAKAF  HFYQ F      LA LY+  SMLTFEGQ   G++AII K   +G++     T D+QPS D NAI I +TG ++I  +NP+H+ +FF LV +GP QYYVHND+FRL Y
Sbjct:    1 MSAEEVAKAFVAHFYQAFDTGVDGLAGLYSPSSMLTFEGQQVQGSEAIIAKLRGVGQVKHQVKTTDIQPSNDPNAIVIFVTGAIQIGGDNPLHFCEFFHLVGTGPGQYYVHNDVFRLNY 119          
BLAST of jgi.p|Trimin1|350626 vs. uniprot
Match: A0A6U3TR09_9STRA (Nuclear transport factor 2 n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3TR09_9STRA)

HSP 1 Score: 135 bits (339), Expect = 1.210e-38
Identity = 65/119 (54.62%), Postives = 84/119 (70.59%), Query Frame = 0
Query:    1 MSAEEVAKAFAQHFYQTFTANAQSLAPLYNDRSMLTFEGQASVGAQAIIQKYVSIGKLAFDQNTLDVQPSVDANAICIHITGKVKIDSNNPIHYTQFFQLVASGPSQYYVHNDIFRLVY 119
            MSAEEVAKAF QHFY  F  N   LA LY+ +SMLTFEG    G  AI+ K  SIG +  +  ++DVQPS + +AI I +TG ++I  +NP+H+ +FFQLV++GP  YYVHND+FRL Y
Sbjct:    1 MSAEEVAKAFVQHFYNAFDTNVDGLAGLYSPQSMLTFEGNQVGGKDAIMGKLKSIGTVKHEIKSMDVQPSSNQSAIIIFVTGSIRIGGDNPLHFCEFFQLVSTGPGAYYVHNDVFRLNY 119          
BLAST of jgi.p|Trimin1|350626 vs. uniprot
Match: W2KVH4_PHYPR (Nuclear transport factor 2 n=8 Tax=Peronosporaceae TaxID=4777 RepID=W2KVH4_PHYPR)

HSP 1 Score: 134 bits (337), Expect = 2.370e-38
Identity = 65/119 (54.62%), Postives = 83/119 (69.75%), Query Frame = 0
Query:    1 MSAEEVAKAFAQHFYQTFTANAQSLAPLYNDRSMLTFEGQASVGAQAIIQKYVSIGKLAFDQNTLDVQPSVDANAICIHITGKVKIDSNNPIHYTQFFQLVASGPSQYYVHNDIFRLVY 119
            MSAEEVAKAF QH+Y TF  N   LA LY D S L++EGQ S G QAI+ K  ++  +  +  T+D+QPS   NA+ I + GK++I+ NNPI +TQ FQLVA  P QYY+HND+FRL Y
Sbjct:    1 MSAEEVAKAFVQHYYTTFDTNRAGLASLYQDVSNLSWEGQMSTGQQAIMAKLQALPAVRHEYPTVDIQPSTSGNAMIIFVQGKMQIEENNPIQFTQVFQLVAHQPGQYYIHNDVFRLQY 119          
BLAST of jgi.p|Trimin1|350626 vs. uniprot
Match: A0A7S1UZF9_9STRA (Nuclear transport factor 2 n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1UZF9_9STRA)

HSP 1 Score: 132 bits (333), Expect = 9.910e-38
Identity = 62/119 (52.10%), Postives = 85/119 (71.43%), Query Frame = 0
Query:    1 MSAEEVAKAFAQHFYQTFTANAQSLAPLYNDRSMLTFEGQASVGAQAIIQKYVSIGKLAFDQNTLDVQPSVDANAICIHITGKVKIDSNNPIHYTQFFQLVASGPSQYYVHNDIFRLVY 119
            MSA+E+AKAF  H+YQTF++N  +L+ L+  +SM+TFEG    GA  I+ K  SIG++  D  + DVQPS D NAI I +TG VKI  +NP+HY + FQL+A+ P QY +HN++FRL Y
Sbjct:    1 MSADEIAKAFVNHYYQTFSSNVGALSSLFTPQSMMTFEGAQLQGADNIVAKLQSIGQVQHDIKSTDVQPSNDPNAILIFVTGAVKIGGDNPLHYCEMFQLIATAPGQYVIHNNVFRLNY 119          
BLAST of jgi.p|Trimin1|350626 vs. uniprot
Match: A0A7S0BUK2_9STRA (Nuclear transport factor 2 n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0BUK2_9STRA)

HSP 1 Score: 132 bits (332), Expect = 1.410e-37
Identity = 64/119 (53.78%), Postives = 83/119 (69.75%), Query Frame = 0
Query:    1 MSAEEVAKAFAQHFYQTFTANAQSLAPLYNDRSMLTFEGQASVGAQAIIQKYVSIGKLAFDQNTLDVQPSVDANAICIHITGKVKIDSNNPIHYTQFFQLVASGPSQYYVHNDIFRLVY 119
            MSAEEVAKAF QHFY  F  N  SL+ LY   SMLTFEG   +G++AII K  S+GK+     +LDVQPS  A++I   +TG + I  +NP+H+ + FQLV++GP  YYVHN++FRL Y
Sbjct:    1 MSAEEVAKAFVQHFYNAFDTNVDSLSGLYQPSSMLTFEGNQVLGSEAIIGKLKSVGKVNHQVKSLDVQPSNSASSIICFVTGIISIGGDNPLHFCEMFQLVSTGPGAYYVHNNVFRLNY 119          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|350626 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CA84_9STRA2.930e-80100.00Nuclear transport factor 2 n=1 Tax=Tribonema minus... [more]
A0A7S4MNW5_9STRA5.460e-4258.82Nuclear transport factor 2 n=1 Tax=Odontella aurit... [more]
A0A7S3L787_9STRA1.610e-4156.30Nuclear transport factor 2 (Fragment) n=1 Tax=Amph... [more]
A0A7S1ZBV8_TRICV5.180e-4056.30Nuclear transport factor 2 n=1 Tax=Trieres chinens... [more]
A0A448ZHJ1_9STRA7.590e-4053.33Nuclear transport factor 2 n=1 Tax=Pseudo-nitzschi... [more]
B8C3C1_THAPS1.040e-3955.46Nuclear transport factor 2 n=1 Tax=Thalassiosira p... [more]
A0A6U3TR09_9STRA1.210e-3854.62Nuclear transport factor 2 n=1 Tax=Ditylum brightw... [more]
W2KVH4_PHYPR2.370e-3854.62Nuclear transport factor 2 n=8 Tax=Peronosporaceae... [more]
A0A7S1UZF9_9STRA9.910e-3852.10Nuclear transport factor 2 n=1 Tax=Grammatophora o... [more]
A0A7S0BUK2_9STRA1.410e-3753.78Nuclear transport factor 2 n=1 Tax=Proboscia inerm... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.10.450.50coord: 1..120
e-value: 6.2E-32
score: 112.3
NoneNo IPR availablePANTHERPTHR12612:SF0GEO05124P1coord: 2..119
IPR002075Nuclear transport factor 2 domainPFAMPF02136NTF2coord: 6..117
e-value: 3.1E-25
score: 89.1
IPR045875Nuclear transport factor 2/Mtr2PANTHERPTHR12612NUCLEAR TRANSPORT FACTOR 2coord: 2..119
IPR018222Nuclear transport factor 2, eukaryotePROSITEPS50177NTF2_DOMAINcoord: 6..117
score: 23.885763
IPR018222Nuclear transport factor 2, eukaryoteCDDcd00780NTF2coord: 2..119
e-value: 3.16811E-31
score: 105.442
IPR032710NTF2-like domain superfamilySUPERFAMILY54427NTF2-likecoord: 3..118

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_68contigContig_68:135976..137871 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|350626mRNA_8461Tribonema minus UTEX_B_3156 mRNAContig_68 135919..137984 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|350626|estExt_Genemark1.C_Ctg_680016 ID=Trimin1|350626|estExt_Genemark1.C_Ctg_680016|Name=jgi.p|Trimin1|350626|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=121bp
MSAEEVAKAFAQHFYQTFTANAQSLAPLYNDRSMLTFEGQASVGAQAIIQ
KYVSIGKLAFDQNTLDVQPSVDANAICIHITGKVKIDSNNPIHYTQFFQL
VASGPSQYYVHNDIFRLVYA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002075NTF2_dom
IPR045875NTF2/Mtr2
IPR018222Nuclear_transport_factor_2_euk
IPR032710NTF2-like_dom_sf