mRNA_8461 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|350626 vs. uniprot
Match: A0A836CA84_9STRA (Nuclear transport factor 2 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CA84_9STRA) HSP 1 Score: 240 bits (612), Expect = 2.790e-79 Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 1
Query: 58 MSAEEVAKAFAQHFYQTFTANAQSLAPLYNDRSMLTFEGQASVGAQAIIQKYVSIGKLAFDQNTLDVQPSVDANAICIHITGKVKIDSNNPIHYTQFFQLVASGPSQYYVHNDIFRLVYA 417
MSAEEVAKAFAQHFYQTFTANAQSLAPLYNDRSMLTFEGQASVGAQAIIQKYVSIGKLAFDQNTLDVQPSVDANAICIHITGKVKIDSNNPIHYTQFFQLVASGPSQYYVHNDIFRLVYA
Sbjct: 1 MSAEEVAKAFAQHFYQTFTANAQSLAPLYNDRSMLTFEGQASVGAQAIIQKYVSIGKLAFDQNTLDVQPSVDANAICIHITGKVKIDSNNPIHYTQFFQLVASGPSQYYVHNDIFRLVYA 120
BLAST of jgi.p|Trimin1|350626 vs. uniprot
Match: A0A7S4MNW5_9STRA (Nuclear transport factor 2 n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4MNW5_9STRA) HSP 1 Score: 143 bits (361), Expect = 4.360e-41 Identity = 70/119 (58.82%), Postives = 87/119 (73.11%), Query Frame = 1
Query: 58 MSAEEVAKAFAQHFYQTFTANAQSLAPLYNDRSMLTFEGQASVGAQAIIQKYVSIGKLAFDQNTLDVQPSVDANAICIHITGKVKIDSNNPIHYTQFFQLVASGPSQYYVHNDIFRLVY 414
MSAEEVAKAF HFYQTF A AQ LA LYN++SMLTFEGQ GAQA+I K G + ++DVQPS + +AI I +TG +KI +NP+H+ + FQLV++GP YYVHND+FRL Y
Sbjct: 1 MSAEEVAKAFTAHFYQTFDAGAQGLAGLYNEQSMLTFEGQQHQGAQAVIAKLQGCGPVQHVVKSMDVQPSSNQSAILIFVTGTIKIGGDNPLHFCEMFQLVSTGPGAYYVHNDVFRLNY 119
BLAST of jgi.p|Trimin1|350626 vs. uniprot
Match: A0A7S3L787_9STRA (Nuclear transport factor 2 (Fragment) n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3L787_9STRA) HSP 1 Score: 142 bits (358), Expect = 1.280e-40 Identity = 67/119 (56.30%), Postives = 87/119 (73.11%), Query Frame = 1
Query: 58 MSAEEVAKAFAQHFYQTFTANAQSLAPLYNDRSMLTFEGQASVGAQAIIQKYVSIGKLAFDQNTLDVQPSVDANAICIHITGKVKIDSNNPIHYTQFFQLVASGPSQYYVHNDIFRLVY 414
MSAEEVAKAF QHFY + +N LA LY+ SMLTFEGQ +G++AII K S+GK+ D ++DVQPS + A+ I +TG V+ID NP+H+ + FQLV++GP YYVHND+FRL Y
Sbjct: 2 MSAEEVAKAFVQHFYGAYASNPAQLASLYSPNSMLTFEGQQHMGSEAIIGKLTSVGKVQHDVKSMDVQPSQNPQAMIIFVTGTVRIDGGNPLHFCEVFQLVSTGPGAYYVHNDVFRLNY 120
BLAST of jgi.p|Trimin1|350626 vs. uniprot
Match: A0A7S1ZBV8_TRICV (Nuclear transport factor 2 n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZBV8_TRICV) HSP 1 Score: 138 bits (348), Expect = 4.080e-39 Identity = 67/119 (56.30%), Postives = 85/119 (71.43%), Query Frame = 1
Query: 58 MSAEEVAKAFAQHFYQTFTANAQSLAPLYNDRSMLTFEGQASVGAQAIIQKYVSIGKLAFDQNTLDVQPSVDANAICIHITGKVKIDSNNPIHYTQFFQLVASGPSQYYVHNDIFRLVY 414
MSAEEVAKAF QHFY TF A+A LA LYN +SMLTFEGQ G++AI+ K G + ++DVQPS NAI I +TG ++I +NP+H+ + FQLV++GP YYVHND+FRL Y
Sbjct: 1 MSAEEVAKAFVQHFYTTFDASADGLASLYNAQSMLTFEGQQHQGSEAIVAKLRGCGPVKHVAKSMDVQPSSSQNAILIFVTGTIQIGGDNPLHFCEMFQLVSTGPGAYYVHNDVFRLNY 119
BLAST of jgi.p|Trimin1|350626 vs. uniprot
Match: A0A448ZHJ1_9STRA (Nuclear transport factor 2 n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZHJ1_9STRA) HSP 1 Score: 138 bits (347), Expect = 5.960e-39 Identity = 64/120 (53.33%), Postives = 88/120 (73.33%), Query Frame = 1
Query: 58 MSAEEVAKAFAQHFYQTFTANAQSLAPLYNDRSMLTFEGQASVGAQAIIQKYVSIGKLAFDQNTLDVQPSVDANAICIHITGKVKIDS-NNPIHYTQFFQLVASGPSQYYVHNDIFRLVY 414
MSAEEVAKAF H+YQTF +N + L L+ND+SM+TFEG +GA I++K S G+ + T+D+QP++D +I I +TG ++I NP+H+++FF LV+SGP QYYVHNDIFRL Y
Sbjct: 1 MSAEEVAKAFVGHYYQTFDSNVEGLRGLFNDKSMMTFEGNQLMGASPILEKLKSFGQTKHNAKTMDIQPAIDGASIVIFVTGSIEIGGPGNPLHFSEFFYLVSSGPGQYYVHNDIFRLNY 120
BLAST of jgi.p|Trimin1|350626 vs. uniprot
Match: B8C3C1_THAPS (Nuclear transport factor 2 n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C3C1_THAPS) HSP 1 Score: 137 bits (346), Expect = 8.190e-39 Identity = 66/119 (55.46%), Postives = 82/119 (68.91%), Query Frame = 1
Query: 58 MSAEEVAKAFAQHFYQTFTANAQSLAPLYNDRSMLTFEGQASVGAQAIIQKYVSIGKLAFDQNTLDVQPSVDANAICIHITGKVKIDSNNPIHYTQFFQLVASGPSQYYVHNDIFRLVY 414
MSAEEVAKAF HFYQ F LA LY+ SMLTFEGQ G++AII K +G++ T D+QPS D NAI I +TG ++I +NP+H+ +FF LV +GP QYYVHND+FRL Y
Sbjct: 1 MSAEEVAKAFVAHFYQAFDTGVDGLAGLYSPSSMLTFEGQQVQGSEAIIAKLRGVGQVKHQVKTTDIQPSNDPNAIVIFVTGAIQIGGDNPLHFCEFFHLVGTGPGQYYVHNDVFRLNY 119
BLAST of jgi.p|Trimin1|350626 vs. uniprot
Match: A0A6U3TR09_9STRA (Nuclear transport factor 2 n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3TR09_9STRA) HSP 1 Score: 135 bits (339), Expect = 9.420e-38 Identity = 65/119 (54.62%), Postives = 84/119 (70.59%), Query Frame = 1
Query: 58 MSAEEVAKAFAQHFYQTFTANAQSLAPLYNDRSMLTFEGQASVGAQAIIQKYVSIGKLAFDQNTLDVQPSVDANAICIHITGKVKIDSNNPIHYTQFFQLVASGPSQYYVHNDIFRLVY 414
MSAEEVAKAF QHFY F N LA LY+ +SMLTFEG G AI+ K SIG + + ++DVQPS + +AI I +TG ++I +NP+H+ +FFQLV++GP YYVHND+FRL Y
Sbjct: 1 MSAEEVAKAFVQHFYNAFDTNVDGLAGLYSPQSMLTFEGNQVGGKDAIMGKLKSIGTVKHEIKSMDVQPSSNQSAIIIFVTGSIRIGGDNPLHFCEFFQLVSTGPGAYYVHNDVFRLNY 119
BLAST of jgi.p|Trimin1|350626 vs. uniprot
Match: W2KVH4_PHYPR (Nuclear transport factor 2 n=8 Tax=Peronosporaceae TaxID=4777 RepID=W2KVH4_PHYPR) HSP 1 Score: 134 bits (337), Expect = 1.840e-37 Identity = 65/119 (54.62%), Postives = 83/119 (69.75%), Query Frame = 1
Query: 58 MSAEEVAKAFAQHFYQTFTANAQSLAPLYNDRSMLTFEGQASVGAQAIIQKYVSIGKLAFDQNTLDVQPSVDANAICIHITGKVKIDSNNPIHYTQFFQLVASGPSQYYVHNDIFRLVY 414
MSAEEVAKAF QH+Y TF N LA LY D S L++EGQ S G QAI+ K ++ + + T+D+QPS NA+ I + GK++I+ NNPI +TQ FQLVA P QYY+HND+FRL Y
Sbjct: 1 MSAEEVAKAFVQHYYTTFDTNRAGLASLYQDVSNLSWEGQMSTGQQAIMAKLQALPAVRHEYPTVDIQPSTSGNAMIIFVQGKMQIEENNPIQFTQVFQLVAHQPGQYYIHNDVFRLQY 119
BLAST of jgi.p|Trimin1|350626 vs. uniprot
Match: A0A7S1UZF9_9STRA (Nuclear transport factor 2 n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1UZF9_9STRA) HSP 1 Score: 132 bits (333), Expect = 7.640e-37 Identity = 62/119 (52.10%), Postives = 85/119 (71.43%), Query Frame = 1
Query: 58 MSAEEVAKAFAQHFYQTFTANAQSLAPLYNDRSMLTFEGQASVGAQAIIQKYVSIGKLAFDQNTLDVQPSVDANAICIHITGKVKIDSNNPIHYTQFFQLVASGPSQYYVHNDIFRLVY 414
MSA+E+AKAF H+YQTF++N +L+ L+ +SM+TFEG GA I+ K SIG++ D + DVQPS D NAI I +TG VKI +NP+HY + FQL+A+ P QY +HN++FRL Y
Sbjct: 1 MSADEIAKAFVNHYYQTFSSNVGALSSLFTPQSMMTFEGAQLQGADNIVAKLQSIGQVQHDIKSTDVQPSNDPNAILIFVTGAVKIGGDNPLHYCEMFQLIATAPGQYVIHNNVFRLNY 119
BLAST of jgi.p|Trimin1|350626 vs. uniprot
Match: A0A7S3DU47_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S3DU47_9STRA) HSP 1 Score: 134 bits (336), Expect = 7.670e-37 Identity = 65/121 (53.72%), Postives = 84/121 (69.42%), Query Frame = 1
Query: 52 SIMSAEEVAKAFAQHFYQTFTANAQSLAPLYNDRSMLTFEGQASVGAQAIIQKYVSIGKLAFDQNTLDVQPSVDANAICIHITGKVKIDSNNPIHYTQFFQLVASGPSQYYVHNDIFRLVY 414
+IM+AEEVAKAF HFYQ F ++ LA L+ SM+TFEGQ G QAI+ K +GK++ + DVQPS +A+AI I +TG + ID NP+HY + FQLV++GP YYVHN IFRL Y
Sbjct: 34 TIMAAEEVAKAFVAHFYQCFDSDPNQLANLFTGESMMTFEGQQFQGPQAIVDKLKGVGKVSHQIKSTDVQPSSNASAILIFVTGGISIDGGNPLHYCEMFQLVSTGPGAYYVHNCIFRLNY 154 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|350626 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_8461 ID=mRNA_8461|Name=jgi.p|Trimin1|350626|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=533bp|location=Sequence derived from alignment at Contig_68:135919..137984+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. TGGAAGGACGTCGACGGAGCGCTCTGGTGGCCAAGCAGCAGCGGGTGGGTback to top protein sequence of jgi.p|Trimin1|350626 >Trimin1|350626|estExt_Genemark1.C_Ctg_680016 ID=Trimin1|350626|estExt_Genemark1.C_Ctg_680016|Name=jgi.p|Trimin1|350626|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=121bp MSAEEVAKAFAQHFYQTFTANAQSLAPLYNDRSMLTFEGQASVGAQAIIQback to top mRNA from alignment at Contig_68:135919..137984+ Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_8461 ID=mRNA_8461|Name=jgi.p|Trimin1|350626|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2066bp|location=Sequence derived from alignment at Contig_68:135919..137984+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_68:135919..137984+ >mRNA_8461 ID=mRNA_8461|Name=jgi.p|Trimin1|350626|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=363bp|location=Sequence derived from alignment at Contig_68:135919..137984+ (Tribonema minus UTEX_B_3156 )back to top |