Trimin1|350502|estExt_Genemark1.C_Ctg_640089 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	jgi.p\|Trimin1\|350502
Unique Name	Trimin1\|350502\|estExt_Genemark1.C_Ctg_640089
Type	polypeptide
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length	262

Homology

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BLAST of jgi.p|Trimin1|350502 vs. uniprot
Match: A0A835YP04_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YP04_9STRA)

HSP 1 Score: 532 bits (1370), Expect = 3.490e-191
Identity = 261/261 (100.00%), Postives = 261/261 (100.00%), Query Frame = 0

Query:    1 MADLEAADPQPVPEALPEAVAIVTEPMSVEPLTGLQPALALRVPRSTSTRLFIVMRVLDNFSRGRPLNAQNRDMMDDRPGMWRSLRTAAPPQLQLRGITDSEWRAWLERFEAEVQSQHVAGGGLGFLCVWLTVIGIPYLFYVSTRYQRAVAAWLTAINEELFEPRGMYATTQTVTLNFQVRKHDGKVTYGAGELGESSWLVIALNPQEAAVLRAEPHLWETRESSAAAPYVGGLSGGLVNMYPEVDFCTKTWCCIGWPRII 261
            MADLEAADPQPVPEALPEAVAIVTEPMSVEPLTGLQPALALRVPRSTSTRLFIVMRVLDNFSRGRPLNAQNRDMMDDRPGMWRSLRTAAPPQLQLRGITDSEWRAWLERFEAEVQSQHVAGGGLGFLCVWLTVIGIPYLFYVSTRYQRAVAAWLTAINEELFEPRGMYATTQTVTLNFQVRKHDGKVTYGAGELGESSWLVIALNPQEAAVLRAEPHLWETRESSAAAPYVGGLSGGLVNMYPEVDFCTKTWCCIGWPRII
Sbjct:    1 MADLEAADPQPVPEALPEAVAIVTEPMSVEPLTGLQPALALRVPRSTSTRLFIVMRVLDNFSRGRPLNAQNRDMMDDRPGMWRSLRTAAPPQLQLRGITDSEWRAWLERFEAEVQSQHVAGGGLGFLCVWLTVIGIPYLFYVSTRYQRAVAAWLTAINEELFEPRGMYATTQTVTLNFQVRKHDGKVTYGAGELGESSWLVIALNPQEAAVLRAEPHLWETRESSAAAPYVGGLSGGLVNMYPEVDFCTKTWCCIGWPRII 261

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BLAST of jgi.p|Trimin1|350502 vs. uniprot
Match: F2U4I5_SALR5 (Uncharacterized protein n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2U4I5_SALR5)

HSP 1 Score: 84.3 bits (207), Expect = 5.480e-16
Identity = 49/145 (33.79%), Postives = 68/145 (46.90%), Query Frame = 0

Query:   82 WRSLRTA-------APPQLQLRGITDSEWRAWLERFEAEVQSQHVAGGGLGFLCVWLTVIGIPYLFYVSTRYQRAVAAWLTAINEELFEPRGMYATTQTVTLNFQVRKHDGKVTYGAGELGESSWLVIALNPQEAAVLRAEPHLW 219
            W S R A        P +L   G+T  +W+ W+++ E  VQ +  +     F   +L  + IP L     RYQRAV  WL   N+E+F+P G+YATTQT  +     +             E SWL +A    EA  L  EPH+W
Sbjct:   55 WCSTRNALADNMLQVPEELARHGVTQDDWQLWMDKLETNVQPKSTSMCSCIFGIAFL--LPIPILVVRQRRYQRAVKQWLDGFNKEVFQPLGLYATTQTGVVQINRSRE------------EISWLAVATTHDEADNLMQEPHMW 185

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|350502 vs. uniprot

BLAST of jgi.p|Trimin1|350502 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A835YP04_9STRA	3.490e-191	100.00	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
F2U4I5_SALR5	5.480e-16	33.79	Uncharacterized protein n=1 Tax=Salpingoeca rosett...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_64	contig	Contig_64:716638..719137 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|350502	mRNA_10155	Tribonema minus UTEX_B_3156	mRNA	Contig_64 716273..719137 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Trimin1|350502|estExt_Genemark1.C_Ctg_640089 ID=Trimin1|350502|estExt_Genemark1.C_Ctg_640089|Name=jgi.p|Trimin1|350502|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=262bp
MADLEAADPQPVPEALPEAVAIVTEPMSVEPLTGLQPALALRVPRSTSTR
LFIVMRVLDNFSRGRPLNAQNRDMMDDRPGMWRSLRTAAPPQLQLRGITD
SEWRAWLERFEAEVQSQHVAGGGLGFLCVWLTVIGIPYLFYVSTRYQRAV
AAWLTAINEELFEPRGMYATTQTVTLNFQVRKHDGKVTYGAGELGESSWL
VIALNPQEAAVLRAEPHLWETRESSAAAPYVGGLSGGLVNMYPEVDFCTK
TWCCIGWPRII*