mRNA_10155 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|350502
Unique NamemRNA_10155
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|350502 vs. uniprot
Match: A0A835YP04_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YP04_9STRA)

HSP 1 Score: 533 bits (1372), Expect = 2.100e-189
Identity = 261/261 (100.00%), Postives = 261/261 (100.00%), Query Frame = 1 
Query:    1 MADLEAADPQPVPEALPEAVAIVTEPMSVEPLTGLQPALALRVPRSTSTRLFIVMRVLDNFSRGRPLNAQNRDMMDDRPGMWRSLRTAAPPQLQLRGITDSEWRAWLERFEAEVQSQHVAGGGLGFLCVWLTVIGIPYLFYVSTRYQRAVAAWLTAINEELFEPRGMYATTQTVTLNFQVRKHDGKVTYGAGELGESSWLVIALNPQEAAVLRAEPHLWETRESSAAAPYVGGLSGGLVNMYPEVDFCTKTWCCIGWPRII 783
            MADLEAADPQPVPEALPEAVAIVTEPMSVEPLTGLQPALALRVPRSTSTRLFIVMRVLDNFSRGRPLNAQNRDMMDDRPGMWRSLRTAAPPQLQLRGITDSEWRAWLERFEAEVQSQHVAGGGLGFLCVWLTVIGIPYLFYVSTRYQRAVAAWLTAINEELFEPRGMYATTQTVTLNFQVRKHDGKVTYGAGELGESSWLVIALNPQEAAVLRAEPHLWETRESSAAAPYVGGLSGGLVNMYPEVDFCTKTWCCIGWPRII
Sbjct:    1 MADLEAADPQPVPEALPEAVAIVTEPMSVEPLTGLQPALALRVPRSTSTRLFIVMRVLDNFSRGRPLNAQNRDMMDDRPGMWRSLRTAAPPQLQLRGITDSEWRAWLERFEAEVQSQHVAGGGLGFLCVWLTVIGIPYLFYVSTRYQRAVAAWLTAINEELFEPRGMYATTQTVTLNFQVRKHDGKVTYGAGELGESSWLVIALNPQEAAVLRAEPHLWETRESSAAAPYVGGLSGGLVNMYPEVDFCTKTWCCIGWPRII 261
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BLAST of jgi.p|Trimin1|350502 vs. uniprot
Match: F2U4I5_SALR5 (Uncharacterized protein n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2U4I5_SALR5)

HSP 1 Score: 84.3 bits (207), Expect = 2.960e-15
Identity = 49/145 (33.79%), Postives = 68/145 (46.90%), Query Frame = 1 
Query:  244 WRSLRTA-------APPQLQLRGITDSEWRAWLERFEAEVQSQHVAGGGLGFLCVWLTVIGIPYLFYVSTRYQRAVAAWLTAINEELFEPRGMYATTQTVTLNFQVRKHDGKVTYGAGELGESSWLVIALNPQEAAVLRAEPHLW 657
            W S R A        P +L   G+T  +W+ W+++ E  VQ +  +     F   +L  + IP L     RYQRAV  WL   N+E+F+P G+YATTQT  +     +             E SWL +A    EA  L  EPH+W
Sbjct:   55 WCSTRNALADNMLQVPEELARHGVTQDDWQLWMDKLETNVQPKSTSMCSCIFGIAFL--LPIPILVVRQRRYQRAVKQWLDGFNKEVFQPLGLYATTQTGVVQINRSRE------------EISWLAVATTHDEADNLMQEPHMW 185
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|350502 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A835YP04_9STRA2.100e-189100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
F2U4I5_SALR52.960e-1533.79Uncharacterized protein n=1 Tax=Salpingoeca rosett... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_64contigContig_64:716273..719137 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|350502|estExt_Genemark1.C_Ctg_640089
Hectar predicted targeting categoryother localisation
TranscriptId350824
TrackFilteredModels1
ProteinId350502
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|350502gene_10155Tribonema minus UTEX_B_3156 geneContig_64 716273..719137 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|350502Trimin1|350502|estExt_Genemark1.C_Ctg_640089Tribonema minus UTEX_B_3156 polypeptideContig_64 716638..719137 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_10155_4exon_10155_4Tribonema minus UTEX_B_3156 exonContig_64 716273..716701 -
exon_10155_3exon_10155_3Tribonema minus UTEX_B_3156 exonContig_64 717387..717592 -
exon_10155_2exon_10155_2Tribonema minus UTEX_B_3156 exonContig_64 718288..718571 -
exon_10155_1exon_10155_1Tribonema minus UTEX_B_3156 exonContig_64 718906..719137 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_10155UTR3_10155Tribonema minus UTEX_B_3156 three_prime_UTRContig_64 716273..716637 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_10155CDS_10155Tribonema minus UTEX_B_3156 CDSContig_64 718906..719137 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_10155 ID=mRNA_10155|Name=jgi.p|Trimin1|350502|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1151bp|location=Sequence derived from alignment at Contig_64:716273..719137- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGGACCTGGAAGCGGCCGACCCTCAGCCTGTGCCAGAGGCTCTGCC
AGAGGCTGTGGCTATTGTGACTGAGCCCATGAGCGTGGAACCCCTCACCG
GACTGCAGCCAGCGCTAGCATTGCGAGTTCCCAGGAGCACGTCGACGAGG
CTCTTCATCGTCATGAGGGTGCTCGACAACTTCAGCCGAGGCAGGCCACT
GAATGCTCAGAATCGCGACATGATGGACGATCGGCCCGGAATGTGGCGGA
GCCTGCGCACTGCCGCGCCGCCGCAACTTCAGCTGCGCGGCATCACAGAC
AGCGAATGGCGTGCATGGCTCGAGCGCTTCGAGGCGGAGGTTCAGTCACA
ACATGTTGCGGGCGGCGGGCTAGGCTTCTTGTGTGTCTGGTTGACGGTCA
TCGGCATCCCGTACTTGTTTTACGTGTCCACGCGCTACCAGCGCGCGGTG
GCCGCGTGGCTGACTGCTATCAACGAGGAGCTGTTCGAACCGCGCGGCAT
GTATGCCACCACCCAGACAGTGACCCTGAACTTTCAAGTGCGCAAGCATG
ACGGCAAGGTGACGTACGGCGCGGGTGAATTAGGTGAATCCTCATGGCTC
GTCATCGCGTTGAACCCCCAAGAAGCAGCAGTGCTCCGCGCCGAACCGCA
CCTGTGGGAGACCCGCGAAAGCTCCGCGGCGGCTCCCTATGTCGGCGGCC
TCAGCGGCGGCCTCGTTAACATGTACCCCGAAGTTGATTTCTGCACCAAG
ACCTGGTGCTGCATTGGCTGGCCGCGCATAATATAGACGGCACAGCACAC
GCATCCAGAGAAGGGACTTGAGGATCCACTCAAGCATGCGCACCGATGCA
AGAGCAGTATCACCCAACTTCAAGCGGCGCAGACGCACGCTGAGGCCCGC
ACAGCTGTGACGACATTGGCATGTGATGATCAGTGTGCGCAGAAACATAT
GTGCCGCATTGGCGCGGCACACTGCCGCGGCACCGCACAGTGCGATTACC
GCGCGGCGCGCAACTGCGCTTTGTGGGTGTGGGCTTGGTCAGCGCAAGTA
CGCGTACATCTGAAGATTTTTTGTTGTGACTTTGTATGATTTTCTTAGTT
CAAGCTGGACAACTTCAGACATTACACAGTAATGCAGCAAGCTCAGAGGC
T
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protein sequence of jgi.p|Trimin1|350502

>Trimin1|350502|estExt_Genemark1.C_Ctg_640089 ID=Trimin1|350502|estExt_Genemark1.C_Ctg_640089|Name=jgi.p|Trimin1|350502|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=262bp
MADLEAADPQPVPEALPEAVAIVTEPMSVEPLTGLQPALALRVPRSTSTR
LFIVMRVLDNFSRGRPLNAQNRDMMDDRPGMWRSLRTAAPPQLQLRGITD
SEWRAWLERFEAEVQSQHVAGGGLGFLCVWLTVIGIPYLFYVSTRYQRAV
AAWLTAINEELFEPRGMYATTQTVTLNFQVRKHDGKVTYGAGELGESSWL
VIALNPQEAAVLRAEPHLWETRESSAAAPYVGGLSGGLVNMYPEVDFCTK
TWCCIGWPRII*
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mRNA from alignment at Contig_64:716273..719137-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10155 ID=mRNA_10155|Name=jgi.p|Trimin1|350502|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2865bp|location=Sequence derived from alignment at Contig_64:716273..719137- (Tribonema minus UTEX_B_3156 )
ATGGCGGACCTGGAAGCGGCCGACCCTCAGCCTGTGCCAGAGGCTCTGCC
AGAGGCTGTGGCTATTGTGACTGAGCCCATGAGCGTGGAACCCCTCACCG
GACTGCAGCCAGCGCTAGCATTGCGAGTTCCCAGGAGCACGTCGACGAGG
CTCTTCATCGTCATGAGGGTGCTCGACAACTTCAGCCGAGGCAGGCCACT
GAATGCTCAGAATCGCGACATGATGGACGATCGTATCCTGAAGGCGCTGT
TGAAGCTGATTATGCACTGTTTGGCAAGCACACAACAGCGGCGGGCCTTC
CCGTCGCTTGTTCAATGCATGTTTGCCAGCATCTTGTGGGCACAGCCTCT
GTTTATGCTTTCAGAAGTCATAGTTTAAGATTTACAGTCGGTCGAACCCT
GACCCTCCCCCATCTTCCATTTGCAAGCGCTGTGAGCACTGTGCCCTCAG
GGCTGACACTTAGCAACGGAAGCATTCCCTTCGTGGCTGGCTCTATCTCA
ATTTCATGGCAGTGCTCTCACAGTTCAAAAGTCGCTTGGGCCATCGCCCG
CCTCCGCTCCCCACAGGGCCCGGAATGTGGCGGAGCCTGCGCACTGCCGC
GCCGCCGCAACTTCAGCTGCGCGGCATCACAGACAGCGAATGGCGTGCAT
GGCTCGAGCGCTTCGAGGCGGAGGTTCAGTCACAACATGTTGCGGGCGGC
GGGCTAGGCTTCTTGTGTGTCTGGTTGACGGTCATCGGCATCCCGTACTT
GTTTTACGTGTCCACGCGCTACCAGCGCGCGGTGGCCGCGTGGCTGACTG
CTATCAACGAGGAGCTGTTCGAACCGCGCGGCATGTATGCCACCACCCAG
GTGCGCATGCGAGCACCAGTCTTCCGGTACTGCTTAGAAGAGTAGAAAAT
CAGTAACTTATCAGTTCTCGCTAAGAGCGTGATACCATGATACTTCTATA
AATACCAGATCATCATGCCATTGGTTGCCAAGTGATGTCAAGCTGGGCAC
CACAGTCAACTTGTATGAGTGTAGCGCTGCCGCCGCCGCTGCGGCTGGTG
GCTGCCAGCCTGCAGGAGCGTGTCAAGACGGACGCGGTACTCCATGGCAC
TGGCAGATAAGATTCGGAAGTGACCTTCGCCTCAGACTACCAGCAAGCAA
TGGGGTTGATGTGCTGGTACCACTTGCTAACTAAAAGTAATACTTCGAAG
TACACTGGTGTATCTTAGCCTAGCACCTGCGCATGTAGACAGCTATCGAG
CTGCCGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCT
GCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGT
TATTCGGAAGCAGTTATACATGTCCTGATGTTGACAGTTGCTATCTTACA
CAATCTAGCACTATGGTTGTGCAGCATAGTACCAGCACTGTTGCTGACAG
GTGCAGAAGGCCCTGAGGTCACGCCCCTACTGCTACTGCCTCCGCTGCCA
CCACCGCCACTGCTGCTGCTGCTGCCATGGCAATGACCGCTGCAGACAGT
GACCCTGAACTTTCAAGTGCGCAAGCATGACGGCAAGGTGACGTACGGCG
CGGGTGAATTAGGTGAATCCTCATGGCTCGTCATCGCGTTGAACCCCCAA
GAAGCAGCAGTGCTCCGCGCCGAACCGCACCTGTGGGAGACCCGCGAAAG
CTCCGCGGCGGCTCCCTATGTCGGCGGCCTCAGCGGCGGCCTCGTTAACA
TGTGAGTGGTAGTGCCTCAGATGACAACACTGCCATGCCATTTGCACGGT
GACCTAAGTTCGCTAGCTGGACAGGGCAGCTTCAGCTGCTCTTCCACCAG
TGGTTACCATTATGATAGCGGTTGACCAATTGTGGTCGTTGCAGATGGAT
GAGGTGGGCATGCATGCGCTTAGTAATACCAACTTGAAGTGGTAGCCCTT
TCAGATTGTACCATGATGCGTTCAAGTTGGATGCCGGTTCAACAAGTCTG
TTGCATGATGGCTGCACTTGCAAATAACTTTATTCGATGACAATCTCATC
CAGCCTGAGGTACTTTGCCCACTGACTGGAACGTAAAACGATCAAGTACC
TGACGTTATGTTCTGCCCAACATGCAGGACATGACGGGTGGCGGGCGTGC
ACGAGTACGGCAGGTCCACAACTAACATGATGATATCGTCGTGCCGGCAT
CATCTCACCCAGGGGCGACAGAGCATGCATGACTTCAAGCTCGCCCTCAC
ACAGTGCGAGTCAAATTGAACTTAAGGGTCAACACAAACAGGCATCGTGA
TAGTGACGGTGTGGCCACATCTTAACGTGCAATCATTGATGGCGGCGCAG
CTGCAGTGCGCGCACCTGACACTCATTCGAGTCGTGATTAAATTGTTTTC
CCCTCCCACCCCGTGGTCTTTTCCAAGTACACGCAGGTACCCCGAAGTTG
ATTTCTGCACCAAGACCTGGTGCTGCATTGGCTGGCCGCGCATAATATAG
ACGGCACAGCACACGCATCCAGAGAAGGGACTTGAGGATCCACTCAAGCA
TGCGCACCGATGCAAGAGCAGTATCACCCAACTTCAAGCGGCGCAGACGC
ACGCTGAGGCCCGCACAGCTGTGACGACATTGGCATGTGATGATCAGTGT
GCGCAGAAACATATGTGCCGCATTGGCGCGGCACACTGCCGCGGCACCGC
ACAGTGCGATTACCGCGCGGCGCGCAACTGCGCTTTGTGGGTGTGGGCTT
GGTCAGCGCAAGTACGCGTACATCTGAAGATTTTTTGTTGTGACTTTGTA
TGATTTTCTTAGTTCAAGCTGGACAACTTCAGACATTACACAGTAATGCA
GCAAGCTCAGAGGCT
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Coding sequence (CDS) from alignment at Contig_64:716273..719137-

>mRNA_10155 ID=mRNA_10155|Name=jgi.p|Trimin1|350502|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=786bp|location=Sequence derived from alignment at Contig_64:716273..719137- (Tribonema minus UTEX_B_3156 )
ATGGCGGACCTGGAAGCGGCCGACCCTCAGCCTGTGCCAGAGGCTCTGCC
AGAGGCTGTGGCTATTGTGACTGAGCCCATGAGCGTGGAACCCCTCACCG
GACTGCAGCCAGCGCTAGCATTGCGAGTTCCCAGGAGCACGTCGACGAGG
CTCTTCATCGTCATGAGGGTGCTCGACAACTTCAGCCGAGGCAGGCCACT
GAATGCTCAGAATCGCGACATGATGGACGATCGGCCCGGAATGTGGCGGA
GCCTGCGCACTGCCGCGCCGCCGCAACTTCAGCTGCGCGGCATCACAGAC
AGCGAATGGCGTGCATGGCTCGAGCGCTTCGAGGCGGAGGTTCAGTCACA
ACATGTTGCGGGCGGCGGGCTAGGCTTCTTGTGTGTCTGGTTGACGGTCA
TCGGCATCCCGTACTTGTTTTACGTGTCCACGCGCTACCAGCGCGCGGTG
GCCGCGTGGCTGACTGCTATCAACGAGGAGCTGTTCGAACCGCGCGGCAT
GTATGCCACCACCCAGACAGTGACCCTGAACTTTCAAGTGCGCAAGCATG
ACGGCAAGGTGACGTACGGCGCGGGTGAATTAGGTGAATCCTCATGGCTC
GTCATCGCGTTGAACCCCCAAGAAGCAGCAGTGCTCCGCGCCGAACCGCA
CCTGTGGGAGACCCGCGAAAGCTCCGCGGCGGCTCCCTATGTCGGCGGCC
TCAGCGGCGGCCTCGTTAACATGTACCCCGAAGTTGATTTCTGCACCAAG
ACCTGGTGCTGCATTGGCTGGCCGCGCATAATATAG
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