mRNA_15539 (mRNA) Tribonema minus UTEX_B_3156
|
Overview
Homology
BLAST of jgi.p|Trimin1|8904 vs. uniprot
Match: A0A835ZDH4_9STRA (Chitin-binding type-4 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDH4_9STRA) HSP 1 Score: 442 bits (1137), Expect = 6.260e-156 Identity = 216/216 (100.00%), Postives = 216/216 (100.00%), Query Frame = 1
Query: 40 MHASIAAGLLLLAQLAGVAAHGYLITPKARSYGPSDAFYDDMSGNGAGLNVVFNSNPGICGDPFQGVPTTNFAGAIGPIQATYNVGATIPVTFQLTANHGGKIVMKLCPSSPASATQSCFNTYPLKRSDTGTTEYWITTGTYTGSAAVTLNYVLPAGVSCANGCLLQWEYVAMQSCIENCASAVCGPAYSTKYNPITGGTNMVACPVAKGPEVTEN 687
MHASIAAGLLLLAQLAGVAAHGYLITPKARSYGPSDAFYDDMSGNGAGLNVVFNSNPGICGDPFQGVPTTNFAGAIGPIQATYNVGATIPVTFQLTANHGGKIVMKLCPSSPASATQSCFNTYPLKRSDTGTTEYWITTGTYTGSAAVTLNYVLPAGVSCANGCLLQWEYVAMQSCIENCASAVCGPAYSTKYNPITGGTNMVACPVAKGPEVTEN
Sbjct: 1 MHASIAAGLLLLAQLAGVAAHGYLITPKARSYGPSDAFYDDMSGNGAGLNVVFNSNPGICGDPFQGVPTTNFAGAIGPIQATYNVGATIPVTFQLTANHGGKIVMKLCPSSPASATQSCFNTYPLKRSDTGTTEYWITTGTYTGSAAVTLNYVLPAGVSCANGCLLQWEYVAMQSCIENCASAVCGPAYSTKYNPITGGTNMVACPVAKGPEVTEN 216
BLAST of jgi.p|Trimin1|8904 vs. uniprot
Match: A0A836CFM7_9STRA (Chitin-binding type-1 domain-containing protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFM7_9STRA) HSP 1 Score: 205 bits (522), Expect = 1.440e-60 Identity = 102/187 (54.55%), Postives = 126/187 (67.38%), Query Frame = 1
Query: 100 HGYLITPKARSYGPSDA-FYDDMSGNGAGLNVVFNSNPGICGDPFQGVPTTNFAGAIGPIQATYNVGATIPVTFQLTANHGGKIVMKLCPSSPASATQSCFNTYPLKRSDTGTTEYWITTGTYTGSAAVTLNYVLPAGVSCANGCLLQWEYVAMQSCIENCASAVCGPAYSTKYNPITGGTNMVACP 657
HGY+ P ARS G A Y GNG G PGICGDPFQG ++NFAG GPI+ATY+ G T+ V LTANHGG+ +K+CP +SATQSCF++ LKR DTG T+YW+ TG+Y S ++ Y+LPAGV+C+NGCLLQWEY AMQSC+ C + CGP Y+ + NPITG NM CP
Sbjct: 38 HGYMQVPAARSLGNKGANAYCQQCGNGLGNRSGGTYPPGICGDPFQGT-SSNFAGGPGPIRATYSQGQTVDVQAILTANHGGRFRVKMCPDVSSSATQSCFDSNTLKRKDTGATDYWLLTGSYGDSPPYSMQYILPAGVACSNGCLLQWEYTAMQSCVVQCPQSECGP-YANRSNPITGSVNMNLCP 222
BLAST of jgi.p|Trimin1|8904 vs. uniprot
Match: A0A836CE35_9STRA (Chitin-binding type-4 domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CE35_9STRA) HSP 1 Score: 161 bits (408), Expect = 2.870e-46 Identity = 80/148 (54.05%), Postives = 100/148 (67.57%), Query Frame = 1
Query: 154 YDDMSGNGAGLNVVFNSNPGICGDPFQGVPTTNFAGAIGPIQ------ATYNVGATIPVTFQLTANHGGKIVMKLCPSSPASATQSCFNTYPLKRSDTGTTEYWITTGTYTGSAAVTLNYVLPAGVSCANGCLLQWEYVAMQSCIENC 579
Y GNG G PGICGDPFQG ++NFAG GPI+ ATY+ G T+ V LTANHGG+ +K+CP +SATQSCF++ LKR DTG T+YW+ TG+Y S ++ Y+LPAGV+C+NGCLLQWEY AMQSC+ C
Sbjct: 1 YCQQCGNGLGNRSGGTYPPGICGDPFQGT-SSNFAGGPGPIRGAYNKSATYSQGQTVDVQAILTANHGGRFRVKMCPDVSSSATQSCFDSNTLKRKDTGATDYWLLTGSYGDSPPYSMQYILPAGVACSNGCLLQWEYTAMQSCVVQC 147
BLAST of jgi.p|Trimin1|8904 vs. uniprot
Match: A0A7J7PXA6_9CHLO (Uncharacterized protein n=1 Tax=Scenedesmus sp. NREL 46B-D3 TaxID=2650976 RepID=A0A7J7PXA6_9CHLO) HSP 1 Score: 137 bits (346), Expect = 8.530e-34 Identity = 90/224 (40.18%), Postives = 127/224 (56.70%), Query Frame = 1
Query: 52 IAAGLLLLAQLAGVAAHGYLITPKARSY-GP--SDAFYDDMSGNGAGLNVVFNSN-PGICGDPFQGVPTTNF-AGAIGPIQATYNVGATIPVTFQLTANHGGKIVMKLCPSSPASATQSCFNTYPLKRSDTGTTEYWITTGTYTGS-AAVTLNYVLPAGVSCANGCLLQWEYVAMQSCIENCASAVCGPAYSTKYNPITGGTNMV------ACPVAKGPEVTEN 687
+ A LL L A V +HG L P++R+ P ++ D GNG G VV N PG+CGDP+Q +F + + G IQATY+ GATI V + + NHGG+I +KLC + + Q+CF+ + L+R+D +I G G+ ++ N+ LPAGVSCA GC+LQWEY+ M SC E C +A Y+ + NP+TG NM +C A PE+ N
Sbjct: 17 LVAALLALLAPAPVYSHGSLTVPRSRNVVSPIQGQTWWKDH-GNGHGAQVVKPLNGPGVCGDPYQHYGDASFYSRSPGAIQATYSAGATINVQWWIQVNHGGRIGVKLC-NRRDNIDQACFDQFQLQRADGLGPFVYIMGGASMGTLGTMSANFRLPAGVSCAGGCVLQWEYLTMNSCFEPCPNAGACGVYANRQNPVTGQFNMANCCVGFSCSAADVPEIFRN 238
BLAST of jgi.p|Trimin1|8904 vs. uniprot
Match: A0A383WL23_TETOB (Chitin-binding type-4 domain-containing protein n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383WL23_TETOB) HSP 1 Score: 128 bits (321), Expect = 1.420e-31 Identity = 79/189 (41.80%), Postives = 102/189 (53.97%), Query Frame = 1
Query: 55 AAGLLL-----LAQLAGVAAHGYLITPKARSY--GPSDAFYDDMSGNGAGLNVVFNSNPGICGDPFQGVPTTNFAGAIGPIQATYNVGATIPVTFQLTANHGGKIVMKLCPSSPASATQSCFNTYPLKRSDTGTTEYWITTGTYTGSAAVTLNYVLPAGVSCANGCLLQWEYVAMQSCIE-NCASAVCG 597
A GLLL A A V HGYL+ P AR++ F+++ SGNG G G+CGDPFQ +NF P+QATY G+ I + LT NHGGK ++CP +CF + L R D G +YWI + +A T+ Y LPAG++C GC+LQWEY +MQSCIE C CG
Sbjct: 3 ACGLLLGLVSLSASFAHVRGHGYLLQPAARNWVAHKQGRFWNEASGNGLGQGNT--QGLGVCGDPFQ-TTNSNFINEPSPVQATYKEGSVIELKVILTTNHGGKFSFRVCPRR-RDLDAACFGSNYLTRVDNGQRDYWI----FDIAAEHTMRYKLPAGITCEAGCVLQWEYYSMQSCIEPGCDRKYCG 183
BLAST of jgi.p|Trimin1|8904 vs. uniprot
Match: A0A383VMG1_TETOB (Uncharacterized protein n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383VMG1_TETOB) HSP 1 Score: 131 bits (330), Expect = 8.180e-31 Identity = 77/160 (48.12%), Postives = 95/160 (59.38%), Query Frame = 1
Query: 163 MSGNGAGLNVVFNSN-PGICGDPFQGVPTTNFAGAIGPIQATYNVGATIPVTFQLTANHGGKIVMKLCPSSPASATQSCFNTYPLKRSDTGTTEYWITTGTYTGSAAVTLNYVLPAGVSCANGCLLQWEYVAMQSCIEN-CASAVCGPAYSTKYNPITGG 636
MSGNG G N+N PG+CGDPFQG +NF PIQATY G I ++ LTANHGGK ++CP S +S ++CF + L R D G T+ WI T +L Y LPAG+SC GC+LQW Y AMQSC+E C CG AY+ N + GG
Sbjct: 1 MSGNGLGFG---NTNGPGVCGDPFQGT-NSNFIMQPSPIQATYTQGGVIGLSVILTANHGGKFSFRVCPRS-SSLDEACFGSNFLTRVDNGQTDTWI----MTSQMDYSLTYQLPAGISCDGGCVLQWRYFAMQSCVERGCNPTYCG-AYAVGTNAVYGG 150
BLAST of jgi.p|Trimin1|8904 vs. uniprot
Match: A0A7J7QNS7_9CHLO (Glycoside hydrolase superfamily n=1 Tax=Scenedesmus sp. NREL 46B-D3 TaxID=2650976 RepID=A0A7J7QNS7_9CHLO) HSP 1 Score: 130 bits (326), Expect = 2.260e-30 Identity = 76/159 (47.80%), Postives = 95/159 (59.75%), Query Frame = 1
Query: 163 MSGNGAGLNVVFNSNPGICGDPFQGVPTTNFAGAIGPIQATYNVGATIPVTFQLTANHGGKIVMKLCPSSPASATQSCFNTYPLKRSDTGTTEYWITTGTYTGSAAVTLNYVLPAGVSCANGCLLQWEYVAMQSCIEN-CASAVCGPAYSTKYNPITGG 636
MSGNG GL+ S PG+CGDPFQG +++F A PIQATY+ GA I + LTAN GGK ++CP S +S ++CF T L R D G + WI T T+ Y LPAG+SC GC+LQW Y AMQSC+E C CG Y+ N + GG
Sbjct: 1 MSGNGLGLSGS-TSGPGVCGDPFQGT-SSSFVTAPSPIQATYSQGAVITLNAFLTANLGGKFSFRVCPRS-SSLDEACFGTNYLTRVDNGQRDTWI----MTPQMDYTMAYQLPAGISCEGGCVLQWRYFAMQSCVERGCDRTYCG-VYADGTNAVYGG 151
BLAST of jgi.p|Trimin1|8904 vs. uniprot
Match: A0A2V0PK48_9CHLO (Uncharacterized protein n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0PK48_9CHLO) HSP 1 Score: 127 bits (319), Expect = 1.080e-29 Identity = 88/213 (41.31%), Postives = 118/213 (55.40%), Query Frame = 1
Query: 67 LLLAQLAGVAAHGYLITPKARSY-----GPSDAFYDDMSGNGAGLNVVFN-SNPGICGDPFQGVPTTNFAGAIG--PIQ--ATYNVGATIPVTFQLTANHGGKIVMKLCPSSPASA--TQSCFNTYPLKRSDTGTTEYWITTGTYTGSAAVTLNYVLPAGVSCANGCLLQWEYVAMQSCIENCA--SAVCGP--AYSTK-YNPITGGTNMVAC 654
LL+A AHG+L P++R+ GP Y+ SGNGAGL PGICGDP+Q + + + P+ A Y+ G + + + LTANHGG I KLCPS+P +A TQ+CF+ YPL+R+D T +I T + T Y LPAGV C +GC+LQWEYV M SC C +A GP +Y+T+ NP G T + C
Sbjct: 11 LLVAAPPAAEAHGWLAVPESRNSRIQLTGPPGISYNRNSGNGAGLQSGPPIPQPGICGDPWQTITDRSLLTYVQDHPMDPNARYSPGQEVRLAWTLTANHGGYIAFKLCPSNPRAAQITQACFDQYPLQRADGLGTRTYIHVSTDNVNMGNT--YRLPAGVDCKDGCVLQWEYVTMNSCWVPCEVEAACAGPLGSYATRGSNPARGQTGLEEC 221
BLAST of jgi.p|Trimin1|8904 vs. uniprot
Match: A0A383V6S1_TETOB (Chitin-binding type-4 domain-containing protein n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383V6S1_TETOB) HSP 1 Score: 112 bits (280), Expect = 8.270e-27 Identity = 65/152 (42.76%), Postives = 91/152 (59.87%), Query Frame = 1
Query: 202 SNPGICGDPFQ-GVPTTNFAGAIGPIQATYNVGATIPVTFQLTANHGGKIVMKLCPSSPASATQSCFNTYPLKRSDTGTTEYWITTGTYTGS-AAVTLNYVLPAGVSCANGCLLQWEYVAMQSCIENCASAVCGPAYSTKYNPITGGTNMVA 651
+ PG+CGDPF T ++G G QATY G I V + + NHGG+I +KLCP S Q+CF+ L+R+D +I GT + ++ ++ LPAGV+CA GC+LQWEY+ M SC E C +A CG Y+ ++NP GGT +A
Sbjct: 26 NGPGVCGDPFLFSFNETFYSGTAGASQATYTPGQAINVQWWIQENHGGRIGVKLCPRRH-SLDQACFDQDQLQRADGLGPFVYIMNGTSKSTLGTMSADFRLPAGVACAGGCVLQWEYLTMNSCYEACDTAACG-VYADRHNP--GGTPALA 173
BLAST of jgi.p|Trimin1|8904 vs. uniprot
Match: A0A150G7L3_GONPE (Chitin-binding type-4 domain-containing protein n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150G7L3_GONPE) HSP 1 Score: 109 bits (273), Expect = 3.440e-25 Identity = 75/212 (35.38%), Postives = 103/212 (48.58%), Query Frame = 1
Query: 46 ASIAAGLL-LLAQLAGVAAHGYLITPKARSYGPS--DAFYDDMSGNGAGLNVVFNSNPGICGDPFQGVPTTNFAGAIGPIQATYNVGATIPVTFQLTANHGGKIVMKLCPSSPASATQSCFNT--YPLKRSDTGTTE----YWITTGTYTGSAAVTLNYVLPAGVSCANGCLLQWEYVAMQSCIENCASAV------CGPAYSTKYNPITGG 636
A++A G+L +A L AHGYL P +R+Y +Y G G G P +CG+PFQ P NF +ATY G + VT +T NHGG++ +++CP + +QSCF+T + ++R T YW G +T + LPAGVSCA GC+LQW +VA Q C C S CG + TGG
Sbjct: 10 AALAVGVLSAMACLPSALAHGYLQDPVSRNYAARLIGEYYCHHCGQGGGQW----KQPDVCGNPFQDSPPINFTTRFYGFRATYTEGQDVNVTIGITTNHGGRMSLRVCPHARDQISQSCFDTPAHQMRRVHTNPQYNNKLYWYVRP---GDVNITQTFRLPAGVSCAGGCVLQWWWVAYQFCYMPCGSDADDVPGECGRNLNFPVGQCTGG 214 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|8904 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_15539 ID=mRNA_15539|Name=jgi.p|Trimin1|8904|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=866bp|location=Sequence derived from alignment at Contig_112:483028..485984+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. TGCAGACAGCGCACAACACAACGGCAGCAGCTCTGCACCATGCACGCATCback to top protein sequence of jgi.p|Trimin1|8904 >Trimin1|8904|CE8903_45 ID=Trimin1|8904|CE8903_45|Name=jgi.p|Trimin1|8904|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=217bp MHASIAAGLLLLAQLAGVAAHGYLITPKARSYGPSDAFYDDMSGNGAGLNback to top mRNA from alignment at Contig_112:483028..485984+ Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_15539 ID=mRNA_15539|Name=jgi.p|Trimin1|8904|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2957bp|location=Sequence derived from alignment at Contig_112:483028..485984+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_112:483028..485984+ >mRNA_15539 ID=mRNA_15539|Name=jgi.p|Trimin1|8904|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=651bp|location=Sequence derived from alignment at Contig_112:483028..485984+ (Tribonema minus UTEX_B_3156 )back to top |