mRNA_6733 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|80238 vs. uniprot
Match: A0A835YNG4_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNG4_9STRA) HSP 1 Score: 549 bits (1414), Expect = 1.140e-196 Identity = 275/275 (100.00%), Postives = 275/275 (100.00%), Query Frame = 1
Query: 1 CSSTSWVALRRAQWRGSVGGVVSPRSIADGEYMDLSEVTRNNCNGVAPLRRTTSPEELFLGNSRTSELKTSEHHGSQTFLQEPATQQDSKLLSSLSNILIDAPGHFGDIMGGEPASPAILARFTPMERVVLTANGNLQRIISSYYNAPVDVHIHQCDRQGEHVYERLVTLSVGGVQFCEAKSIVVLHSDACIEAVETKSVGIGQLFRHLDTLPAFTLLSVGQHQPSPSSQTDTGASPTSSISGIWRIYDLESKHLSCRIQEKFADNLFDMPLVSQ 825
CSSTSWVALRRAQWRGSVGGVVSPRSIADGEYMDLSEVTRNNCNGVAPLRRTTSPEELFLGNSRTSELKTSEHHGSQTFLQEPATQQDSKLLSSLSNILIDAPGHFGDIMGGEPASPAILARFTPMERVVLTANGNLQRIISSYYNAPVDVHIHQCDRQGEHVYERLVTLSVGGVQFCEAKSIVVLHSDACIEAVETKSVGIGQLFRHLDTLPAFTLLSVGQHQPSPSSQTDTGASPTSSISGIWRIYDLESKHLSCRIQEKFADNLFDMPLVSQ
Sbjct: 1 CSSTSWVALRRAQWRGSVGGVVSPRSIADGEYMDLSEVTRNNCNGVAPLRRTTSPEELFLGNSRTSELKTSEHHGSQTFLQEPATQQDSKLLSSLSNILIDAPGHFGDIMGGEPASPAILARFTPMERVVLTANGNLQRIISSYYNAPVDVHIHQCDRQGEHVYERLVTLSVGGVQFCEAKSIVVLHSDACIEAVETKSVGIGQLFRHLDTLPAFTLLSVGQHQPSPSSQTDTGASPTSSISGIWRIYDLESKHLSCRIQEKFADNLFDMPLVSQ 275
BLAST of jgi.p|Trimin1|80238 vs. uniprot
Match: A0A6H5KZ28_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ28_9PHAE) HSP 1 Score: 141 bits (356), Expect = 6.040e-36 Identity = 79/160 (49.38%), Postives = 101/160 (63.12%), Query Frame = 1
Query: 355 ILARFTPMERVVLTANGNLQRIISSYYNAPVDVHIHQCDRQGEHVYERLVTLSVGGVQFCEAKSIVVLHSDACIEAVETKSVGIGQLFRHLDTLPAFTLLSVGQH-----QPSPSSQTDTGASP---TSSISGIWRIYDLESKHLSCRIQEKFADNLFDM 810
++ F +ERVVLTAN NLQR+ISSYYN+PV V + C G VY+R V +SV G FC AKS+VV+H AC EAV+T VG+GQLF L+ LP F LL+ G+ + S +S T G T G WR+YDL S H+SCRI E+F +LF +
Sbjct: 168 LIGHFDALERVVLTANANLQRVISSYYNSPVTVDVIFCTEVGPGVYDREVEISVLGHVFCVAKSLVVVHDPACAEAVKTGRVGLGQLFHSLNILPRFELLNAGRRVGRSARFSGNSDTIGGEKEGVCTRDDGGFWRLYDLRSGHVSCRIYEEFPPDLFGL 327
BLAST of jgi.p|Trimin1|80238 vs. uniprot
Match: L8HDT3_ACACA (Uncharacterized protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8HDT3_ACACA) HSP 1 Score: 128 bits (322), Expect = 2.600e-32 Identity = 72/169 (42.60%), Postives = 100/169 (59.17%), Query Frame = 1
Query: 307 PGHFGDIMGGEPASPAILARFTPMERVVLTANGNLQRIISSYYNAPVDVHIHQCDRQGE-HVYERLVTLSVGGVQFCEAKSIVVLHSDACIEAVETKSVGIGQLFRHLDTLPAFTLLSVGQHQPSPSSQTDTGASPTSSISGIWRIYDLESKHLSCRIQEKFADNLFDM 810
P HFGDI+ + + A FT +ER+VL+ANGNLQR++S+YYN+PV V I + DR G+ ++ER V L+ G FC AKS V + + + V + VGIGQLF HL LP+F LL G+ G S +WR Y LE+ + C I+E+F +LFD+
Sbjct: 49 PNHFGDILAPREITTVLPAGFTGLERIVLSANGNLQRLMSAYYNSPVSVEIIKNDRVGQTSIFEREVNLTCFGKAFCNAKSTVTIKKEEHLRLVLEEKVGIGQLFFHLRLLPSFVLLQAGR---------SGGVS-------LWREYRLEADSIVCEIREEFVADLFDL 201
BLAST of jgi.p|Trimin1|80238 vs. uniprot
Match: A0A813DD16_POLGL (Hypothetical protein n=2 Tax=Polarella glacialis TaxID=89957 RepID=A0A813DD16_POLGL) HSP 1 Score: 131 bits (329), Expect = 1.360e-31 Identity = 81/187 (43.32%), Postives = 108/187 (57.75%), Query Frame = 1
Query: 307 PGHFGDIMGGEPASPAI----LARFTPMERVVLTANGNLQRIISSYYNAPVDVHIHQCDRQGEHVYERLVTLSVGGVQFCEAKSIVVLHSDACIEAVETKSVGIGQLFRHLDTLPAFTLLSVGQ-HQPSPSSQTDTGASPTSSISGIWRIYDLESKHLSCRIQEKFADNLFDM-PLVSQ*WSQTTLV 849
PG GDIMG P + L F+P++R VL ANGNLQRI+SSY+++PV V + R+ YER V LSV G F S VVL ++ CI A+E VGIGQLFRHL+ +PAF+LL GQ + S T +G S + WR Y L + C I+E +LF++ P +S SQ++ V
Sbjct: 32 PG-LGDIMGSATVEPPVDLPSLDTFSPLQRTVLFANGNLQRILSSYHDSPVTVTVRFNRRKAHGSYEREVDLSVFGCIFAVCTSSVVLTTEECIRAIEVDGVGIGQLFRHLNIMPAFSLLQAGQLAAAAEESPTTSGPQALDSEARFWREYQLSGLGVQCTIREVLRSDLFELRPAISTEASQSSAV 217
BLAST of jgi.p|Trimin1|80238 vs. uniprot
Match: A0A507D5L9_9FUNG (Uncharacterized protein n=1 Tax=Synchytrium endobioticum TaxID=286115 RepID=A0A507D5L9_9FUNG) HSP 1 Score: 121 bits (303), Expect = 6.210e-30 Identity = 70/172 (40.70%), Postives = 96/172 (55.81%), Query Frame = 1
Query: 307 PGHFGDIMGGEPASPAILARFTPMERVVLTANGNLQRIISSYYNAPVDVHIHQCDRQGEH----VYERLVTLSVGGVQFCEAKSIVVLHSDACIEAVETKSVGIGQLFRHLDTLPAFTLLSVGQHQPSPSSQTDTGASPTSSISGIWRIYDLESKHLSCRIQEKFADNLFDM 810
PGH GD+M ++ FTP++RV+LTANGN+QRIISSYYNAPV V I ++ ++R V + V C A S V +++ + VE VGIGQLFR+L+ LP FTL+ VG+ D G + + G WR Y L C I E+F DN+F++
Sbjct: 12 PGHLGDLMSATETFLSLPDLFTPLQRVLLTANGNVQRIISSYYNAPVTVDILLNHKESSTPACTTFKRSVNIIVKNHVCCRAVSTVHIYNVEVLRLVEQDCVGIGQLFRYLNILPEFTLVDVGR---------DDGVA--GDVGGFWRHYILSGNGFKCHIHERFPDNVFNL 172
BLAST of jgi.p|Trimin1|80238 vs. uniprot
Match: A0A7S4QHH5_9DINO (Hypothetical protein (Fragment) n=1 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4QHH5_9DINO) HSP 1 Score: 125 bits (313), Expect = 2.840e-29 Identity = 83/208 (39.90%), Postives = 109/208 (52.40%), Query Frame = 1
Query: 238 LQEPATQQDSKLLSSLSNIL---IDAPGHFGDIMG------------GEPASPAILARFTPMERVVLTANGNLQRIISSYYNAPVDVHIHQCDRQGEHVYERLVTLSVGGVQFCEAKSIVVLHSDACIEAVETKSVGIGQLFRHLDTLPAFTLLSVGQHQPSPS--SQTDTGASPTSSISGIWRIYDLESKHLSCRIQEKFADNLFDM 810
L +P Q + SS S + +DA G GDIMG G+P P+ L FTP++RV LTANGNLQR++SSYY+APV V IH R YER V L V F S V L + C+ A+E + + IGQLFRH D LP F L G P P+ ++T+ G + + WR Y L + + C I E +LFD+
Sbjct: 18 LADPPAMQKAAARSSSSPLWESPLDALGGLGDIMGRPAADGGARAAGGQPHMPS-LELFTPLQRVALTANGNLQRLVSSYYSAPVHVPIHYNRRVERGRYERQVDLVVHDTVFARCTSTVRLAREDCMRAIEEEGISIGQLFRHFDVLPEFELREYGFLPPPPAEAARTEAGDAFSCVARRFWRRYALWAGGIECDIYEDLRCDLFDL 224
BLAST of jgi.p|Trimin1|80238 vs. uniprot
Match: A0A507CLZ7_9FUNG (HHH_8 domain-containing protein n=2 Tax=Synchytrium endobioticum TaxID=286115 RepID=A0A507CLZ7_9FUNG) HSP 1 Score: 120 bits (302), Expect = 4.350e-28 Identity = 73/182 (40.11%), Postives = 101/182 (55.49%), Query Frame = 1
Query: 307 PGHFGDIMGGEPASPAILARFTPMERVVLTANGNLQRIISSYYNAPVDVHIHQCDRQGEH----VYERLVTLSVGGVQFCEAKSIVVLHSDACIEAVETKSVGIGQLFRHLDTLPAFTLLSVGQHQPSPSSQTDTGASPTSSISGIWRIYDLESKHLSCRIQEKFADNLFDMP-LVSQ*WSQ 837
PGH GD+M ++ FTP++RV+LTANGN+QRIISSYYNAPV V I ++ ++R V + V C A S V +++ + VE VGIGQLFR+L+ LP FTL+ VG+ D G + + G WR Y L C I E+F DN F + L+++ WS+
Sbjct: 12 PGHLGDLMSATETFLSLPDLFTPLQRVLLTANGNVQRIISSYYNAPVTVDILLNHKESSTPACTTFKRSVNIIVKNHVCCRAVSTVHIYNVEVLRLVEQDCVGIGQLFRYLNILPEFTLVDVGR---------DDGVA--GDVGGFWRHYILSGNGFKCHIHERFPDNWFRLLILLTRLWSE 182
BLAST of jgi.p|Trimin1|80238 vs. uniprot
Match: A0A1Z5JUV1_FISSO (Uncharacterized protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JUV1_FISSO) HSP 1 Score: 116 bits (290), Expect = 4.530e-28 Identity = 68/171 (39.77%), Postives = 99/171 (57.89%), Query Frame = 1
Query: 316 FGDIMGGEPASPAILARF----TPMERVVLTANGNLQRIISSYYNAPVDVHIHQCDRQGEH--VYERLVTLSVGGVQFCEAKSIVVLHSDACIEAVETKSVGIGQLFRHLDTLPAFTLLSVGQHQPSPSSQTDTGASPTSSISGIWRIYDLESKHLSCRIQEKFADNLFDM 810
F D + G + LA P++R+VLTANGNLQR+I+SYY+A V V + C + E+ V++R V L V GV+FC A+S V + D+C E V + VG+GQLFR+L+ LP F L + G P + GIWR Y L+ L+C+I+E+F L+++
Sbjct: 10 FVDALTGTSGNATTLATAFGLTNPLDRLVLTANGNLQRLIASYYDADVSVRVEGCSFRQENPRVWDRTVYLEVLGVEFCRAESEVTIQQDSCQELVASGQVGLGQLFRYLNVLPMFFL-------------REAGVDPITG--GIWREYTLQCDALTCQIREEFIPGLWEL 165
BLAST of jgi.p|Trimin1|80238 vs. uniprot
Match: A0A507ECC0_9FUNG (Uncharacterized protein n=1 Tax=Powellomyces hirtus TaxID=109895 RepID=A0A507ECC0_9FUNG) HSP 1 Score: 116 bits (290), Expect = 9.420e-28 Identity = 69/191 (36.13%), Postives = 100/191 (52.36%), Query Frame = 1
Query: 253 TQQDSKLLSSLSNILIDAPGHFGDIMGGEPASPAILARFTPMERVVLTANGNLQRIISSYYNAPVDVHIHQCDRQGE-----HVYERLVTLSVGGVQFCEAKSIVVLHSDACIEAVETKSVGIGQLFRHLDTLPAFTLLSVGQHQPSPSSQTDTGASPTSSISGIWRIYDLESKHLSCRIQEKFADNLFDM 810
T DSK S+++ D P HFGDIM S I +TP+ER++LTANGN+QRI+S+Y+NA V V I + + ++ R V L + G C A S V++ + + + + VGIGQLFR+L+ LP F L VG+ +G WR Y L S + C I E F ++F++
Sbjct: 16 TTPDSKSCSTVTGA--DPPPHFGDIMSSRETSVLIPEGYTPLERILLTANGNVQRILSAYHNAKVTVEILKNELASSLDDVPAIFHRKVLLIIKGKTCCTANSTVIIRDEKYLRLLVDQHVGIGQLFRYLNILPEFALTKVGRDPAG---------------NGFWRKYTLSSPGIVCEIHEDFPPHVFEL 189
BLAST of jgi.p|Trimin1|80238 vs. uniprot
Match: B8C1D0_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C1D0_THAPS) HSP 1 Score: 119 bits (297), Expect = 1.780e-27 Identity = 85/255 (33.33%), Postives = 118/255 (46.27%), Query Frame = 1
Query: 223 GSQTFLQEPATQQDSKLLSSLSNILID--APGHFGDIMGGE--------PASP---------------AILARF----TPMERVVLTANGNLQRIISSYYNAPVDVHIHQCDR-----------------------------QGEHVYERLVTLSVGGVQFCEAKSIVVLHSDACIEAVETKSVGIGQLFRHLDTLPAFTLLSVGQ----HQPSPSS----QTDTGASPTSSISGIWRIYDLESKHLSCRIQEKF 789
G +T D+ ++ N ID G GDIM G+ PA+P + ARF TPMER+ LTANGNLQRI SS+Y+APV VH+ C R +G+ V++R+V L V FC A S++ + S CI +E +VG+GQLFR+L+ LP F+LL G+ H S S + P G+WR Y+L+ + L+C I E+F
Sbjct: 60 GKETLTVNATLNGDTTFTETIDNDEIDIVGAGTLGDIMAGDSVSGNLEMPANPNPTTVKDGLVTKEGGELNARFNCNFTPMERIALTANGNLQRIFSSFYDAPVHVHVDSCARRELSARDEIQIGFTDANGFSTEKYRTHIDEGDAVWDRVVHLYVHDKTFCRATSVIHVRSHECIRLIEDGTVGLGQLFRYLNKLPTFSLLDAGRTEYAHAESEQSISKNDSKQALQPHEFEGGMWRTYELQCEELTCLIHEEF 314 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|80238 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_6733 ID=mRNA_6733|Name=jgi.p|Trimin1|80238|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=957bp|location=Sequence derived from alignment at Contig_60:21902..24767- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. TGTAGCAGCACGTCATGGGTTGCACTGAGACGAGCACAGTGGCGGGGCTCback to top protein sequence of jgi.p|Trimin1|80238 >Trimin1|80238|CE80237_50 ID=Trimin1|80238|CE80237_50|Name=jgi.p|Trimin1|80238|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=276bp CSSTSWVALRRAQWRGSVGGVVSPRSIADGEYMDLSEVTRNNCNGVAPLRback to top mRNA from alignment at Contig_60:21902..24767- Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_6733 ID=mRNA_6733|Name=jgi.p|Trimin1|80238|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2866bp|location=Sequence derived from alignment at Contig_60:21902..24767- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_60:21902..24767- >mRNA_6733 ID=mRNA_6733|Name=jgi.p|Trimin1|80238|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=828bp|location=Sequence derived from alignment at Contig_60:21902..24767- (Tribonema minus UTEX_B_3156 )back to top |