mRNA_2078 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|158604
Unique NamemRNA_2078
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|158604 vs. uniprot
Match: A0A836CAQ2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAQ2_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 3.820e-13
Identity = 33/33 (100.00%), Postives = 33/33 (100.00%), Query Frame = 1 
Query:  523 LMNFLLAVILSGCQTVLATCRHCRHLTWMPVNR 621
            LMNFLLAVILSGCQTVLATCRHCRHLTWMPVNR
Sbjct:  175 LMNFLLAVILSGCQTVLATCRHCRHLTWMPVNR 207
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|158604 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A836CAQ2_9STRA3.820e-13100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_6contigContig_6:392220..392843 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|158604|e_gw1.6.263.1
Hectar predicted targeting categoryother localisation
TranscriptId158926
TrackFilteredModels1
ProteinId158604
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|158604gene_2078Tribonema minus UTEX_B_3156 geneContig_6 392220..392843 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_2078_1exon_2078_1Tribonema minus UTEX_B_3156 exonContig_6 392220..392843 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_2078CDS_2078Tribonema minus UTEX_B_3156 CDSContig_6 392220..392843 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|158604Trimin1|158604|e_gw1.6.263.1Tribonema minus UTEX_B_3156 polypeptideContig_6 392220..392843 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_2078 ID=mRNA_2078|Name=jgi.p|Trimin1|158604|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=624bp|location=Sequence derived from alignment at Contig_6:392220..392843+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GTCGGCGGCCTGTCGGCGCTGATCAAGCTCGATCTCAGCCGCTGCACCAT
GCTCACAAGGCTGCCCGATAGCATTGGTGGATTGAGCACGTTGACAGTGC
TCGACCTCTATGAATGTGAGCAGCTCACTGTCCTGCCAGACAGCGTTGGC
CAGTTGACAGCATTGACGGCGCTCGACTTGGGCTGGTGTGAAAGTCTTGT
CAGCCTGCCAGAAAGCCTAGGCGATCTTGCAGCGCTGACAAGGCTGAGGG
TGTGCGGATGCCACGCGCTTCAGGCACTGCCAGAGAGCATTGGCAACCTT
GCTGCATTGACAGACCTCGATGCGAGCTTTTGCCCCGCCCTTGAGACACT
GCCGAACAAGGTTGGTGCCCTGGCGGCGTTGACGACGCTTGATCTCAGCT
ACGATGGGGCTCTCACTGACTTGCCGAACGGCATCGCCAATCTGGCTGCA
TTGACGAAGCTTGACCTGAGCTCTTGCCACAATGTGGCTAGCTTACCGGA
GAGCATAGGCACAATGACAGCTCTGATGAACTTTTTACTTGCTGTTATCT
TGAGCGGCTGCCAGACAGTATTGGCGACCTGCAGGCATTGCAGACACTTG
ACTTGGATGCCTGTGAATCGCTGA
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protein sequence of jgi.p|Trimin1|158604

>Trimin1|158604|e_gw1.6.263.1 ID=Trimin1|158604|e_gw1.6.263.1|Name=jgi.p|Trimin1|158604|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=208bp
VGGLSALIKLDLSRCTMLTRLPDSIGGLSTLTVLDLYECEQLTVLPDSVG
QLTALTALDLGWCESLVSLPESLGDLAALTRLRVCGCHALQALPESIGNL
AALTDLDASFCPALETLPNKVGALAALTTLDLSYDGALTDLPNGIANLAA
LTKLDLSSCHNVASLPESIGTMTALMNFLLAVILSGCQTVLATCRHCRHL
TWMPVNR*
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mRNA from alignment at Contig_6:392220..392843+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2078 ID=mRNA_2078|Name=jgi.p|Trimin1|158604|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=624bp|location=Sequence derived from alignment at Contig_6:392220..392843+ (Tribonema minus UTEX_B_3156 )
GTCGGCGGCCTGTCGGCGCTGATCAAGCTCGATCTCAGCCGCTGCACCAT
GCTCACAAGGCTGCCCGATAGCATTGGTGGATTGAGCACGTTGACAGTGC
TCGACCTCTATGAATGTGAGCAGCTCACTGTCCTGCCAGACAGCGTTGGC
CAGTTGACAGCATTGACGGCGCTCGACTTGGGCTGGTGTGAAAGTCTTGT
CAGCCTGCCAGAAAGCCTAGGCGATCTTGCAGCGCTGACAAGGCTGAGGG
TGTGCGGATGCCACGCGCTTCAGGCACTGCCAGAGAGCATTGGCAACCTT
GCTGCATTGACAGACCTCGATGCGAGCTTTTGCCCCGCCCTTGAGACACT
GCCGAACAAGGTTGGTGCCCTGGCGGCGTTGACGACGCTTGATCTCAGCT
ACGATGGGGCTCTCACTGACTTGCCGAACGGCATCGCCAATCTGGCTGCA
TTGACGAAGCTTGACCTGAGCTCTTGCCACAATGTGGCTAGCTTACCGGA
GAGCATAGGCACAATGACAGCTCTGATGAACTTTTTACTTGCTGTTATCT
TGAGCGGCTGCCAGACAGTATTGGCGACCTGCAGGCATTGCAGACACTTG
ACTTGGATGCCTGTGAATCGCTGA
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Coding sequence (CDS) from alignment at Contig_6:392220..392843+

>mRNA_2078 ID=mRNA_2078|Name=jgi.p|Trimin1|158604|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=624bp|location=Sequence derived from alignment at Contig_6:392220..392843+ (Tribonema minus UTEX_B_3156 )
GTCGGCGGCCTGTCGGCGCTGATCAAGCTCGATCTCAGCCGCTGCACCAT
GCTCACAAGGCTGCCCGATAGCATTGGTGGATTGAGCACGTTGACAGTGC
TCGACCTCTATGAATGTGAGCAGCTCACTGTCCTGCCAGACAGCGTTGGC
CAGTTGACAGCATTGACGGCGCTCGACTTGGGCTGGTGTGAAAGTCTTGT
CAGCCTGCCAGAAAGCCTAGGCGATCTTGCAGCGCTGACAAGGCTGAGGG
TGTGCGGATGCCACGCGCTTCAGGCACTGCCAGAGAGCATTGGCAACCTT
GCTGCATTGACAGACCTCGATGCGAGCTTTTGCCCCGCCCTTGAGACACT
GCCGAACAAGGTTGGTGCCCTGGCGGCGTTGACGACGCTTGATCTCAGCT
ACGATGGGGCTCTCACTGACTTGCCGAACGGCATCGCCAATCTGGCTGCA
TTGACGAAGCTTGACCTGAGCTCTTGCCACAATGTGGCTAGCTTACCGGA
GAGCATAGGCACAATGACAGCTCTGATGAACTTTTTACTTGCTGTTATCT
TGAGCGGCTGCCAGACAGTATTGGCGACCTGCAGGCATTGCAGACACTTG
ACTTGGATGCCTGTGAATCGCTGA
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