mRNA_11147 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|78669
Unique NamemRNA_11147
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|78669 vs. uniprot
Match: A0A835YX54_9STRA (Putative cruciform DNA binding protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YX54_9STRA)

HSP 1 Score: 108 bits (271), Expect = 1.530e-27
Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = 2 
Query:   53 MSSSGPSKMTGTKDEVLGSAKATIGSTIGNHQMEAEGHTQNKGGTAQKEAAGTKQKAE 226
            MSSSGPSKMTGTKDEVLGSAKATIGSTIGNHQMEAEGHTQNKGGTAQKEAAGTKQKAE
Sbjct:    1 MSSSGPSKMTGTKDEVLGSAKATIGSTIGNHQMEAEGHTQNKGGTAQKEAAGTKQKAE 58
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BLAST of jgi.p|Trimin1|78669 vs. uniprot
Match: A0A835YNR6_9STRA (Putative cruciform DNA binding protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNR6_9STRA)

HSP 1 Score: 95.5 bits (236), Expect = 2.800e-22
Identity = 50/56 (89.29%), Postives = 52/56 (92.86%), Query Frame = 2 
Query:   53 MSSSGPSKMTGTKDEVLGSAKATIGSTIGNHQMEAEGHTQNKGGTAQKEAAGTKQK 220
            MSSSGPSKMTGTKDE+LGSAKATIGSTIGNHQMEAEGHTQNK GTA+K AA  KQK
Sbjct:    1 MSSSGPSKMTGTKDEILGSAKATIGSTIGNHQMEAEGHTQNKAGTAEKNAAAAKQK 56
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BLAST of jgi.p|Trimin1|78669 vs. uniprot
Match: A0A836CHS6_9STRA (Putative cruciform DNA binding protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHS6_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 3.770e-16
Identity = 43/58 (74.14%), Postives = 51/58 (87.93%), Query Frame = 2 
Query:   53 MSSSGPSKMTGTKDEVLGSAKATIGSTIGNHQMEAEGHTQNKGGTAQKEAAGTKQKAE 226
            MSSSGPSK+TGTKDEVLGSAKATIGSTIGNH+MEAEG+ Q++ GT +  AA  KQ+A+
Sbjct:    1 MSSSGPSKVTGTKDEVLGSAKATIGSTIGNHKMEAEGNAQHQHGTLEAHAATAKQQAQ 58
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BLAST of jgi.p|Trimin1|78669 vs. uniprot
Match: A0A835Z1U0_9STRA (DNA binding protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1U0_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 2.290e-14
Identity = 38/58 (65.52%), Postives = 46/58 (79.31%), Query Frame = 2 
Query:   53 MSSSGPSKMTGTKDEVLGSAKATIGSTIGNHQMEAEGHTQNKGGTAQKEAAGTKQKAE 226
            MSSSGPSK+  TKD+V+G  KAT+G TIGNHQMEAEG+ Q++ GT +KE A  KQK E
Sbjct:    1 MSSSGPSKINATKDQVIGQVKATVGKTIGNHQMEAEGNVQHQHGTTEKEVAAAKQKGE 58
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BLAST of jgi.p|Trimin1|78669 vs. uniprot
Match: A0A835Z1D8_9STRA (Putative cruciform DNA binding protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1D8_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 6.910e-13
Identity = 38/58 (65.52%), Postives = 46/58 (79.31%), Query Frame = 2 
Query:   53 MSSSGPSKMTGTKDEVLGSAKATIGSTIGNHQMEAEGHTQNKGGTAQKEAAGTKQKAE 226
            MSSSGPSK++ TKD+V+G  KAT+G TIGNH MEAEG+ Q+  GTA+K AA  KQ AE
Sbjct:    1 MSSSGPSKISATKDQVVGQVKATVGKTIGNHTMEAEGNMQHTHGTAEKHAATAKQTAE 58
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BLAST of jgi.p|Trimin1|78669 vs. uniprot
Match: A0A835Z2J6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2J6_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 3.970e-9
Identity = 33/58 (56.90%), Postives = 42/58 (72.41%), Query Frame = 2 
Query:   53 MSSSGPSKMTGTKDEVLGSAKATIGSTIGNHQMEAEGHTQNKGGTAQKEAAGTKQKAE 226
            M SSGP K+  T+D+V+G  K T+G TIGNH+MEAEGH Q   GTA+K+AA  K  A+
Sbjct:    1 MISSGPIKVLATRDQVVGQVKVTVGKTIGNHRMEAEGHKQQDHGTAEKQAAAAKHTAD 58
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|78669 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A835YX54_9STRA1.530e-27100.00Putative cruciform DNA binding protein n=1 Tax=Tri... [more]
A0A835YNR6_9STRA2.800e-2289.29Putative cruciform DNA binding protein n=2 Tax=Tri... [more]
A0A836CHS6_9STRA3.770e-1674.14Putative cruciform DNA binding protein n=1 Tax=Tri... [more]
A0A835Z1U0_9STRA2.290e-1465.52DNA binding protein n=1 Tax=Tribonema minus TaxID=... [more]
A0A835Z1D8_9STRA6.910e-1365.52Putative cruciform DNA binding protein n=1 Tax=Tri... [more]
A0A835Z2J6_9STRA3.970e-956.90Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_59contigContig_59:619665..620904 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|78669|CE78668_204
Max annot lvl4751|Fungi
EggNOG OGs2E835@1|root,2SEKR@2759|Eukaryota,3AC5S@33154|Opisthokonta,3P9IK@4751|Fungi,1GXQ6@112252|Fungi incertae sedis
Evalue0.00035
Seed ortholog936053.I1BX45
Hectar predicted targeting categoryother localisation
TranscriptId78991
TrackFilteredModels1
ProteinId78669
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|78669gene_11147Tribonema minus UTEX_B_3156 geneContig_59 619665..620904 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|78669Trimin1|78669|CE78668_204Tribonema minus UTEX_B_3156 polypeptideContig_59 619717..620677 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_11147_1exon_11147_1Tribonema minus UTEX_B_3156 exonContig_59 619665..619740 +
exon_11147_2exon_11147_2Tribonema minus UTEX_B_3156 exonContig_59 620114..620198 +
exon_11147_3exon_11147_3Tribonema minus UTEX_B_3156 exonContig_59 620487..620904 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_11147UTR5_11147Tribonema minus UTEX_B_3156 five_prime_UTRContig_59 619665..619716 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_11147CDS_11147Tribonema minus UTEX_B_3156 CDSContig_59 619717..619740 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_11147UTR3_11147Tribonema minus UTEX_B_3156 three_prime_UTRContig_59 620678..620904 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_11147 ID=mRNA_11147|Name=jgi.p|Trimin1|78669|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=579bp|location=Sequence derived from alignment at Contig_59:619665..620904+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
AGACACACCAAGCAATTCAAAGCAACTTTCAACACCCAACACCATCAACA
CCATGTCGTCCTCTGGACCCAGCAAGATGACCGGCACCAAGGACGAGGTC
CTCGGCTCCGCCAAGGCCACCATCGGCAGCACAATCGGCAACCACCAGAT
GGAGGCAGAAGGCCACACCCAGAACAAGGGCGGCACCGCACAGAAGGAGG
CTGCGGGCACGAAGCAGAAGGCAGAGGGCGCAGGCGATGGCCTTTTTGGC
CACATGCAGAAGGCCACTGGCCAGGTCCTCGGCAACGAGCGAATGCAGGG
GGAGGGGGAGATGAACAAGGCCAAGGGCACTTTCAAGTCTGACACCGCCT
AAGCTCGGCATTATGTGCTTCCGTAGCTACGACTCTAGATTCTCAGCGTG
GGCATTTGAACACGGATTGTGACCTCTGGATGTGAATTATTTGTGGATAC
TGGAGCATGAGCCAGGCACCTTGGGGCTAGGATGTATTGCCATGTGTATG
GAGGGCTTTATGCCAACAATCCTGTAGACAGGCGGTCACAAAATGAGATG
ATGCAGCAACAGAACATTTGCAACCTCCA
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protein sequence of jgi.p|Trimin1|78669

>Trimin1|78669|CE78668_204 ID=Trimin1|78669|CE78668_204|Name=jgi.p|Trimin1|78669|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=100bp
MSSSGPSKMTGTKDEVLGSAKATIGSTIGNHQMEAEGHTQNKGGTAQKEA
AGTKQKAEGAGDGLFGHMQKATGQVLGNERMQGEGEMNKAKGTFKSDTA*
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mRNA from alignment at Contig_59:619665..620904+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_11147 ID=mRNA_11147|Name=jgi.p|Trimin1|78669|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1240bp|location=Sequence derived from alignment at Contig_59:619665..620904+ (Tribonema minus UTEX_B_3156 )
AGACACACCAAGCAATTCAAAGCAACTTTCAACACCCAACACCATCAACA
CCATGTCGTCCTCTGGACCCAGCAAGGTATGCTTCGACGTCATGCCGCGT
CGCTCCGGGCACAATTTTCAAGTTGAAGATTCCGAAGTTATGCGAGCAAC
GCTGCTGCCTCAGCGCTTTGCCCTGGTGGCTGTTCCGCGTTCGTAGCATC
AGGCAGCGCGCACACGTTATGCTCGATTGTGGCGGCGCTGTGTGTGTGCG
CTCACATGAGAGCGACACATTCGAAGCTTGGGAGGATCTTTACTACATCG
ACACGCGAAACGCGGTAGTGTTTGTTTGTTGTGTAACATTCTGAGGCTGC
CGCACGACTTCGATGAGTGACTACGCAGTTTTGACGCTACGAAGCCGAGT
TCTTCCCGCTGAGCACGTCAACACTCTCTTGTCGCGCTTTATCTCTCAGA
TGACCGGCACCAAGGACGAGGTCCTCGGCTCCGCCAAGGCCACCATCGGC
AGCACAATCGGCAACCACCAGATGGAGGCAGAAGGTGAGCTTCCTCCGCC
TTGGCTATTGGATGAGTGCGCTCTTCTTCCGTCTCATCCTGGCAGTGCAG
CCATGATTCGTCTGCACACGCTAAAGCACGACCGACATTTGTCGCATGCA
TTGTGTATACTTGACTTTTGACCTGGTGTAGAGTGTGTTGACCAATTCAG
CATTCATAAGCTATGCCAGTATGAATACAGCTTCACCCTTTGATAACATC
ACTTGAAGTCAGTGGTGTTCACTCACTCACCAATTATCTCAACCAACATG
CATTCCTCATTTATTCGCGCAGGCCACACCCAGAACAAGGGCGGCACCGC
ACAGAAGGAGGCTGCGGGCACGAAGCAGAAGGCAGAGGGCGCAGGCGATG
GCCTTTTTGGCCACATGCAGAAGGCCACTGGCCAGGTCCTCGGCAACGAG
CGAATGCAGGGGGAGGGGGAGATGAACAAGGCCAAGGGCACTTTCAAGTC
TGACACCGCCTAAGCTCGGCATTATGTGCTTCCGTAGCTACGACTCTAGA
TTCTCAGCGTGGGCATTTGAACACGGATTGTGACCTCTGGATGTGAATTA
TTTGTGGATACTGGAGCATGAGCCAGGCACCTTGGGGCTAGGATGTATTG
CCATGTGTATGGAGGGCTTTATGCCAACAATCCTGTAGACAGGCGGTCAC
AAAATGAGATGATGCAGCAACAGAACATTTGCAACCTCCA
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Coding sequence (CDS) from alignment at Contig_59:619665..620904+

>mRNA_11147 ID=mRNA_11147|Name=jgi.p|Trimin1|78669|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=300bp|location=Sequence derived from alignment at Contig_59:619665..620904+ (Tribonema minus UTEX_B_3156 )
ATGTCGTCCTCTGGACCCAGCAAGATGACCGGCACCAAGGACGAGGTCCT
CGGCTCCGCCAAGGCCACCATCGGCAGCACAATCGGCAACCACCAGATGG
AGGCAGAAGGCCACACCCAGAACAAGGGCGGCACCGCACAGAAGGAGGCT
GCGGGCACGAAGCAGAAGGCAGAGGGCGCAGGCGATGGCCTTTTTGGCCA
CATGCAGAAGGCCACTGGCCAGGTCCTCGGCAACGAGCGAATGCAGGGGG
AGGGGGAGATGAACAAGGCCAAGGGCACTTTCAAGTCTGACACCGCCTAA
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