Trimin1|350199|estExt_Genemark1.C_Ctg_580061 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	jgi.p\|Trimin1\|350199
Unique Name	Trimin1\|350199\|estExt_Genemark1.C_Ctg_580061
Type	polypeptide
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length	335

Homology

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BLAST of jgi.p|Trimin1|350199 vs. uniprot
Match: A0A836CBC4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBC4_9STRA)

HSP 1 Score: 524 bits (1349), Expect = 1.490e-185
Identity = 334/334 (100.00%), Postives = 334/334 (100.00%), Query Frame = 0

Query:    1 MGWEEEMEWRELASAVLRQLNITPRQCSTFASEPDPTHYDVPEREEVQLHSKAVSGRWSSLQDALPGRILTLRRKADELVKPYYLKAAALQGLGRHREAWRLFTFLARARPDSRIELPCGSTLSADHHASKAVTTLSRESLLAICEAPTETPDLPRGWVARESRLRPGVWFFELVATGQRQWDSPPPGSPSCVSXXXXXAPSLCAPITAPAMGEIAAVGSPALLSPPSSPQGAATGSLEADAAARQLHLLLXXXXXXXXXXXGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQQCPAERVVAQCGAAMAAVLQPAMTAPKC 334
            MGWEEEMEWRELASAVLRQLNITPRQCSTFASEPDPTHYDVPEREEVQLHSKAVSGRWSSLQDALPGRILTLRRKADELVKPYYLKAAALQGLGRHREAWRLFTFLARARPDSRIELPCGSTLSADHHASKAVTTLSRESLLAICEAPTETPDLPRGWVARESRLRPGVWFFELVATGQRQWDSPPPGSPSCVSXXXXXAPSLCAPITAPAMGEIAAVGSPALLSPPSSPQGAATGSLEADAAARQLHLLLXXXXXXXXXXXGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQQCPAERVVAQCGAAMAAVLQPAMTAPKC
Sbjct:    1 MGWEEEMEWRELASAVLRQLNITPRQCSTFASEPDPTHYDVPEREEVQLHSKAVSGRWSSLQDALPGRILTLRRKADELVKPYYLKAAALQGLGRHREAWRLFTFLARARPDSRIELPCGSTLSADHHASKAVTTLSRESLLAICEAPTETPDLPRGWVARESRLRPGVWFFELVATGQRQWDSPPPGSPSCVSXXXXXAPSLCAPITAPAMGEIAAVGSPALLSPPSSPQGAATGSLEADAAARQLHLLLXXXXXXXXXXXGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQQCPAERVVAQCGAAMAAVLQPAMTAPKC 334

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BLAST of jgi.p|Trimin1|350199 vs. uniprot
Match: A0A835ZCL8_9STRA (WW domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCL8_9STRA)

HSP 1 Score: 146 bits (369), Expect = 4.590e-38
Identity = 79/118 (66.95%), Postives = 86/118 (72.88%), Query Frame = 0

Query:   80 VKPYYLKAAALQGLGRHREAWRLFTFLARARPDSRIELPCGSTLSADHHASKAVTTLS---RESLLAICEAPTETPD---LPRGWVARESRLRPGVWFFELVATGQRQWDSPPPGSPS 191
            VKPYY+KAAALQG+GR  EA RLF FLARARPD+RIELPCG+TL A  HAS          RE LLA+C AP  TPD   LP GWVARESRLRPG+WFFE V T  RQW +PPP  PS
Sbjct:  150 VKPYYIKAAALQGMGRRCEALRLFAFLARARPDARIELPCGATLGAHAHASPXXXXXXXXRREDLLAVCAAPPGTPDATLLPAGWVARESRLRPGLWFFEHVETELRQW-TPPPLPPS 266

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|350199 vs. uniprot

BLAST of jgi.p|Trimin1|350199 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A836CBC4_9STRA	1.490e-185	100.00	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
A0A835ZCL8_9STRA	4.590e-38	66.95	WW domain-containing protein n=1 Tax=Tribonema min...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 286..306
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 260..278
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 260..281

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_58	contig	Contig_58:487129..489069 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|350199	mRNA_9414	Tribonema minus UTEX_B_3156	mRNA	Contig_58 486850..489069 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Trimin1|350199|estExt_Genemark1.C_Ctg_580061 ID=Trimin1|350199|estExt_Genemark1.C_Ctg_580061|Name=jgi.p|Trimin1|350199|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=335bp
MGWEEEMEWRELASAVLRQLNITPRQCSTFASEPDPTHYDVPEREEVQLH
SKAVSGRWSSLQDALPGRILTLRRKADELVKPYYLKAAALQGLGRHREAW
RLFTFLARARPDSRIELPCGSTLSADHHASKAVTTLSRESLLAICEAPTE
TPDLPRGWVARESRLRPGVWFFELVATGQRQWDSPPPGSPSCVSPQCVAA
PSLCAPITAPAMGEIAAVGSPALLSPPSSPQGAATGSLEADAAARQLHLL
LQQQALQQQQQAGVLSSPPQSPPSTGAGASAESAAAARLQLLLQHCQQQL
QQEQQQQCPAERVVAQCGAAMAAVLQPAMTAPKC*