mRNA_9414 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	jgi.p\|Trimin1\|350199
Unique Name	mRNA_9414
Type	mRNA
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )

Homology

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BLAST of jgi.p|Trimin1|350199 vs. uniprot
Match: A0A836CBC4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBC4_9STRA)

HSP 1 Score: 524 bits (1350), Expect = 3.800e-184
Identity = 333/334 (99.70%), Postives = 333/334 (99.70%), Query Frame = 1

Query:    1 MGWEEEMEWRELASAVLRQLNITPRQCSTFASEPDPTHYDVPEREEVQLHSKAVSGRWSSLQDALPGRILTLRRKADELVKPYYLKAAALQGLGRHREAWRLFTFLARARPDSRIELPCGSTLSADHHASKAVTTLSRESLLAICEAPTETPDLPRGWVARESRLRPGVWFFELVATGQRQWDSPPPGSPSCVSXXXXXAPSLCAPITAPAMGEIAAVGSPALLSPPSSPQGAATGSLEADAAARQLHLLLXXXXXXXXXXXGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQQCPAERVVAQCGAAMAAVLQPAMTAPKC 1002
            MGWEEEMEWRELASAVLRQLNITPRQCSTFASEPDPTHYDVPEREEVQLHSKAVSGRWSSLQDALPGRILTLRRKADELVKPYYLKAAALQGLGRHREAWRLFTFLARARPDSRIELPCGSTLSADHHASKAVTTLSRESLLAICEAPTETPDLPRGWVARESRLRPGVWFFELVATGQRQWDSPPPGSPSCVSXXXXXAPSLCAPITAPAMGEIAAVGSPALLSPPSSPQGAATGSLEADAAARQLHLLLXXXXXXXXXXXG XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQQCPAERVVAQCGAAMAAVLQPAMTAPKC
Sbjct:    1 MGWEEEMEWRELASAVLRQLNITPRQCSTFASEPDPTHYDVPEREEVQLHSKAVSGRWSSLQDALPGRILTLRRKADELVKPYYLKAAALQGLGRHREAWRLFTFLARARPDSRIELPCGSTLSADHHASKAVTTLSRESLLAICEAPTETPDLPRGWVARESRLRPGVWFFELVATGQRQWDSPPPGSPSCVSXXXXXAPSLCAPITAPAMGEIAAVGSPALLSPPSSPQGAATGSLEADAAARQLHLLLXXXXXXXXXXXGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQQCPAERVVAQCGAAMAAVLQPAMTAPKC 334

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BLAST of jgi.p|Trimin1|350199 vs. uniprot
Match: A0A835ZCL8_9STRA (WW domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCL8_9STRA)

HSP 1 Score: 146 bits (369), Expect = 3.790e-37
Identity = 79/118 (66.95%), Postives = 86/118 (72.88%), Query Frame = 1

Query:  238 VKPYYLKAAALQGLGRHREAWRLFTFLARARPDSRIELPCGSTLSADHHASKAVTTLS---RESLLAICEAPTETPD---LPRGWVARESRLRPGVWFFELVATGQRQWDSPPPGSPS 573
            VKPYY+KAAALQG+GR  EA RLF FLARARPD+RIELPCG+TL A  HAS          RE LLA+C AP  TPD   LP GWVARESRLRPG+WFFE V T  RQW +PPP  PS
Sbjct:  150 VKPYYIKAAALQGMGRRCEALRLFAFLARARPDARIELPCGATLGAHAHASPXXXXXXXXRREDLLAVCAAPPGTPDATLLPAGWVARESRLRPGLWFFEHVETELRQW-TPPPLPPS 266

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|350199 vs. uniprot

BLAST of jgi.p|Trimin1|350199 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A836CBC4_9STRA	3.800e-184	99.70	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
A0A835ZCL8_9STRA	3.790e-37	66.95	WW domain-containing protein n=1 Tax=Tribonema min...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_58	contig	Contig_58:486850..489069 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Properties


Property Name	Value
ProteomeId	Trimin1\|350199\|estExt_Genemark1.C_Ctg_580061
Hectar predicted targeting category	other localisation
TranscriptId	350521
Track	FilteredModels1
ProteinId	350199

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|350199	gene_9414	Tribonema minus UTEX_B_3156	gene	Contig_58 486850..489069 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
exon_9414_2	exon_9414_2	Tribonema minus UTEX_B_3156	exon	Contig_58 486850..487896 -
exon_9414_1	exon_9414_1	Tribonema minus UTEX_B_3156	exon	Contig_58 488833..489069 -

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
UTR3_9414	UTR3_9414	Tribonema minus UTEX_B_3156	three_prime_UTR	Contig_58 486850..487128 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
CDS_9414	CDS_9414	Tribonema minus UTEX_B_3156	CDS	Contig_58 488833..489069 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|350199	Trimin1\|350199\|estExt_Genemark1.C_Ctg_580061	Tribonema minus UTEX_B_3156	polypeptide	Contig_58 487129..489069 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Contig_58:486850..489069-
coding sequence from alignment at Contig_58:486850..489069-

spliced messenger RNA

>mRNA_9414 ID=mRNA_9414|Name=jgi.p|Trimin1|350199|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1284bp|location=Sequence derived from alignment at Contig_58:486850..489069- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCTGGGAGGAGGAAATGGAGTGGCGCGAGCTGGCGTCGGCTGTCCT
CAGGCAGCTGAACATCACACCCAGGCAGTGTTCCACCTTCGCCAGCGAAC
CTGACCCCACACATTACGACGTCCCGGAGCGGGAGGAGGTGCAGCTTCAC
AGCAAGGCTGTGTCAGGCAGGTGGTCGTCCCTTCAGGACGCCCTGCCGGG
GCGAATCCTGACTCTCAGGCGCAAGGCAGACGAGCTGGTGAAGCCTTACT
ATCTCAAGGCAGCCGCCTTACAGGGACTCGGCCGTCACAGGGAAGCCTGG
CGCCTGTTCACTTTCCTGGCGCGAGCTCGCCCCGACTCACGCATAGAGCT
GCCCTGCGGATCGACTCTCAGCGCGGACCATCACGCGTCCAAGGCTGTTA
CGACACTCTCGCGCGAGAGCCTTCTGGCGATATGCGAGGCTCCCACCGAG
ACGCCAGATCTTCCCAGAGGCTGGGTCGCTCGCGAGTCGCGCTTGCGGCC
AGGCGTCTGGTTCTTCGAGCTCGTCGCAACCGGGCAGCGGCAGTGGGATT
CTCCACCGCCCGGCAGCCCATCTTGCGTCAGCCCACAATGCGTTGCCGCC
CCGTCGCTGTGTGCTCCTATCACTGCACCGGCGATGGGGGAGATTGCAGC
TGTCGGCAGCCCGGCTCTGCTGTCGCCGCCATCGTCGCCTCAGGGCGCAG
CGACGGGGTCGCTGGAGGCTGACGCAGCTGCCAGGCAGCTCCATCTGCTG
CTGCAGCAGCAGGCCCTGCAGCAGCAACAGCAGGCTGGCGTGCTCTCATC
GCCGCCCCAGTCGCCACCGAGCACAGGAGCAGGCGCCTCGGCGGAGTCCG
CGGCGGCTGCGCGCCTGCAGCTGCTTCTGCAGCACTGCCAGCAGCAGCTG
CAACAGGAGCAGCAGCAGCAGTGCCCAGCGGAGCGCGTGGTGGCGCAGTG
CGGCGCGGCCATGGCGGCGGTGCTGCAGCCTGCCATGACTGCGCCCAAGT
GCTGAGCACATTTCGCAAAATCAGGGCGACGACTTCACAGCCTGGCGGCT
GCCCGCAGCAGCACTCGCCATGGCACCCACGGCAGCAAAGGCACCGGTGC
ATAAAACGGTACGGGCGTTGTCAACAGGCGCGCTTCTTCGAAGCGTGCGC
CAATCGGCAGCCCAAAAAAGCAGCACAGGAGACCAAAGGCGCAGCACTTG
CGGGTTGGCGCGGCAGGCACAGCAGCACAGGCCACCAGCCTAACGCGCCG
CGTGTGTGCCCCTAGCCAACACTGAGCCTTCCAC

protein sequence of jgi.p|Trimin1|350199

>Trimin1|350199|estExt_Genemark1.C_Ctg_580061 ID=Trimin1|350199|estExt_Genemark1.C_Ctg_580061|Name=jgi.p|Trimin1|350199|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=335bp
MGWEEEMEWRELASAVLRQLNITPRQCSTFASEPDPTHYDVPEREEVQLH
SKAVSGRWSSLQDALPGRILTLRRKADELVKPYYLKAAALQGLGRHREAW
RLFTFLARARPDSRIELPCGSTLSADHHASKAVTTLSRESLLAICEAPTE
TPDLPRGWVARESRLRPGVWFFELVATGQRQWDSPPPGSPSCVSPQCVAA
PSLCAPITAPAMGEIAAVGSPALLSPPSSPQGAATGSLEADAAARQLHLL
LQQQALQQQQQAGVLSSPPQSPPSTGAGASAESAAAARLQLLLQHCQQQL
QQEQQQQCPAERVVAQCGAAMAAVLQPAMTAPKC*

mRNA from alignment at Contig_58:486850..489069-

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_9414 ID=mRNA_9414|Name=jgi.p|Trimin1|350199|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2220bp|location=Sequence derived from alignment at Contig_58:486850..489069- (Tribonema minus UTEX_B_3156 )
ATGGGCTGGGAGGAGGAAATGGAGTGGCGCGAGCTGGCGTCGGCTGTCCT
CAGGCAGCTGAACATCACACCCAGGCAGTGTTCCACCTTCGCCAGCGAAC
CTGACCCCACACATTACGACGTCCCGGAGCGGGAGGAGGTGCAGCTTCAC
AGCAAGGCTGTGTCAGGCAGGTGGTCGTCCCTTCAGGACGCCCTGCCGGG
GCGAATCCTGACTCTCAGGCGCAAGGCAGACGAGCTGGTACGGCGGCGTT
GTCTCGAGCAGGTGTGTGTCAGCGGAACGTGTTGAACATGCTTGTTTCTT
ACGAGCACATCGCGCGCAAACAGCGTGATTCCTTGCATTATCAGTAGAGC
TGATTTCAAAGGTGATTAGCCTCGCGACAGGCGCCATTTGCCGCTGTGCG
GCGTGCACAAGGTGTGTTCTTATCTACGCGTGCCCCAGCCGGTGCATTCC
TCCGCAACGGTGTGCCACCAGGCACTAACGCAAATTGAGTGCGCTTGTGG
CATGAGGCTGGTTGCCAGCGTGTGTCGTGGTACTTGTGAGTGTGCATTGG
CTGTCTGGCTGAGGTCATCCTGATGTTTTGTTGCGTCAAAACACCTGCTC
AAACCTGCTTGAAGGTAGCAGTCCCTAAGCGCCGTGTTGCTGCAATCTGA
TCGTCGAGCAGGCACTCAGGAGGTATTCCACAGCTCTCCGCCTGTGCCGA
CATTGGCGAGCGCAGGAGCCTTCGTTGCGCGCATCATTACATCACAACAG
GGCTTCCGTGCTCATAGCGTTGAACAAAAACGAGGAATCCTTGGCGGATT
GCGACGCTGCCATCGCATTGGAACGAGATTGGGTGAGTTGATGTCAAATG
CTCGCTTGTGTTTTTCTCAGTTAGACTCATGATGTCATAGGTCACGCGCG
CAACAGCGAATCTTCGCGTCCTCACGCTGCTTCAACGCGCAGTCTAGACC
CATGCAATCTGCATCCCTCCAGTTCTTAGTTTCGCGACCCCGCAGCAAGA
TTCATCTGTGGATTTGTCAGAATACACGCCTATGTGTGTACGCCATAGTG
GGCTGCTATGTTGTCGTCAGTGATGCATCTCCACTCGTTTCCATTGACGC
ATGCACGCTGATTCGTCAGCAGCCTCTGTCCGTTATTTAACACGCAAAAC
GCTTTTTGGTGCTCCTGTCGCAGGTGAAGCCTTACTATCTCAAGGCAGCC
GCCTTACAGGGACTCGGCCGTCACAGGGAAGCCTGGCGCCTGTTCACTTT
CCTGGCGCGAGCTCGCCCCGACTCACGCATAGAGCTGCCCTGCGGATCGA
CTCTCAGCGCGGACCATCACGCGTCCAAGGCTGTTACGACACTCTCGCGC
GAGAGCCTTCTGGCGATATGCGAGGCTCCCACCGAGACGCCAGATCTTCC
CAGAGGCTGGGTCGCTCGCGAGTCGCGCTTGCGGCCAGGCGTCTGGTTCT
TCGAGCTCGTCGCAACCGGGCAGCGGCAGTGGGATTCTCCACCGCCCGGC
AGCCCATCTTGCGTCAGCCCACAATGCGTTGCCGCCCCGTCGCTGTGTGC
TCCTATCACTGCACCGGCGATGGGGGAGATTGCAGCTGTCGGCAGCCCGG
CTCTGCTGTCGCCGCCATCGTCGCCTCAGGGCGCAGCGACGGGGTCGCTG
GAGGCTGACGCAGCTGCCAGGCAGCTCCATCTGCTGCTGCAGCAGCAGGC
CCTGCAGCAGCAACAGCAGGCTGGCGTGCTCTCATCGCCGCCCCAGTCGC
CACCGAGCACAGGAGCAGGCGCCTCGGCGGAGTCCGCGGCGGCTGCGCGC
CTGCAGCTGCTTCTGCAGCACTGCCAGCAGCAGCTGCAACAGGAGCAGCA
GCAGCAGTGCCCAGCGGAGCGCGTGGTGGCGCAGTGCGGCGCGGCCATGG
CGGCGGTGCTGCAGCCTGCCATGACTGCGCCCAAGTGCTGAGCACATTTC
GCAAAATCAGGGCGACGACTTCACAGCCTGGCGGCTGCCCGCAGCAGCAC
TCGCCATGGCACCCACGGCAGCAAAGGCACCGGTGCATAAAACGGTACGG
GCGTTGTCAACAGGCGCGCTTCTTCGAAGCGTGCGCCAATCGGCAGCCCA
AAAAAGCAGCACAGGAGACCAAAGGCGCAGCACTTGCGGGTTGGCGCGGC
AGGCACAGCAGCACAGGCCACCAGCCTAACGCGCCGCGTGTGTGCCCCTA
GCCAACACTGAGCCTTCCAC

Coding sequence (CDS) from alignment at Contig_58:486850..489069-

>mRNA_9414 ID=mRNA_9414|Name=jgi.p|Trimin1|350199|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1005bp|location=Sequence derived from alignment at Contig_58:486850..489069- (Tribonema minus UTEX_B_3156 )
ATGGGCTGGGAGGAGGAAATGGAGTGGCGCGAGCTGGCGTCGGCTGTCCT
CAGGCAGCTGAACATCACACCCAGGCAGTGTTCCACCTTCGCCAGCGAAC
CTGACCCCACACATTACGACGTCCCGGAGCGGGAGGAGGTGCAGCTTCAC
AGCAAGGCTGTGTCAGGCAGGTGGTCGTCCCTTCAGGACGCCCTGCCGGG
GCGAATCCTGACTCTCAGGCGCAAGGCAGACGAGCTGGTGAAGCCTTACT
ATCTCAAGGCAGCCGCCTTACAGGGACTCGGCCGTCACAGGGAAGCCTGG
CGCCTGTTCACTTTCCTGGCGCGAGCTCGCCCCGACTCACGCATAGAGCT
GCCCTGCGGATCGACTCTCAGCGCGGACCATCACGCGTCCAAGGCTGTTA
CGACACTCTCGCGCGAGAGCCTTCTGGCGATATGCGAGGCTCCCACCGAG
ACGCCAGATCTTCCCAGAGGCTGGGTCGCTCGCGAGTCGCGCTTGCGGCC
AGGCGTCTGGTTCTTCGAGCTCGTCGCAACCGGGCAGCGGCAGTGGGATT
CTCCACCGCCCGGCAGCCCATCTTGCGTCAGCCCACAATGCGTTGCCGCC
CCGTCGCTGTGTGCTCCTATCACTGCACCGGCGATGGGGGAGATTGCAGC
TGTCGGCAGCCCGGCTCTGCTGTCGCCGCCATCGTCGCCTCAGGGCGCAG
CGACGGGGTCGCTGGAGGCTGACGCAGCTGCCAGGCAGCTCCATCTGCTG
CTGCAGCAGCAGGCCCTGCAGCAGCAACAGCAGGCTGGCGTGCTCTCATC
GCCGCCCCAGTCGCCACCGAGCACAGGAGCAGGCGCCTCGGCGGAGTCCG
CGGCGGCTGCGCGCCTGCAGCTGCTTCTGCAGCACTGCCAGCAGCAGCTG
CAACAGGAGCAGCAGCAGCAGTGCCCAGCGGAGCGCGTGGTGGCGCAGTG
CGGCGCGGCCATGGCGGCGGTGCTGCAGCCTGCCATGACTGCGCCCAAGT
GCTGA