mRNA_9354 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|350172
Unique NamemRNA_9354
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|350172 vs. uniprot
Match: A0A836CA53_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CA53_9STRA)

HSP 1 Score: 551 bits (1421), Expect = 1.620e-196
Identity = 291/291 (100.00%), Postives = 291/291 (100.00%), Query Frame = 1 
Query:   88 PVDMEVVKPDDAPSSAPPYPCHTDVVWMCEACAVEHCLTSKQALAPFRKAHGFKVYAVPKDGDCFYSSVCMALASVGVRATVAQLREWVAASMTEEHLRFYQVHAEANPSASWLDFVRDTAGGRLRGSSEAAEAGRTRAQRAEAQEXXXXXXXXXXXXXXKGESGGRTRRSGGEARGPAVQTVEQLQEYIRREGSACGAGDCMWADDAAFAVVAQRLRLGILFVDMERARCAWPYRQLAACEGEPAHYVVLKREGPAGHFVYIGAASGAAAFALRDLPNAVRALWSEHLPP 960
            PVDMEVVKPDDAPSSAPPYPCHTDVVWMCEACAVEHCLTSKQALAPFRKAHGFKVYAVPKDGDCFYSSVCMALASVGVRATVAQLREWVAASMTEEHLRFYQVHAEANPSASWLDFVRDTAGGRLRGSSEAAEAGRTRAQRAEAQEXXXXXXXXXXXXXXKGESGGRTRRSGGEARGPAVQTVEQLQEYIRREGSACGAGDCMWADDAAFAVVAQRLRLGILFVDMERARCAWPYRQLAACEGEPAHYVVLKREGPAGHFVYIGAASGAAAFALRDLPNAVRALWSEHLPP
Sbjct:   30 PVDMEVVKPDDAPSSAPPYPCHTDVVWMCEACAVEHCLTSKQALAPFRKAHGFKVYAVPKDGDCFYSSVCMALASVGVRATVAQLREWVAASMTEEHLRFYQVHAEANPSASWLDFVRDTAGGRLRGSSEAAEAGRTRAQRAEAQEXXXXXXXXXXXXXXKGESGGRTRRSGGEARGPAVQTVEQLQEYIRREGSACGAGDCMWADDAAFAVVAQRLRLGILFVDMERARCAWPYRQLAACEGEPAHYVVLKREGPAGHFVYIGAASGAAAFALRDLPNAVRALWSEHLPP 320
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BLAST of jgi.p|Trimin1|350172 vs. uniprot
Match: A0A6H5L3H2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3H2_9PHAE)

HSP 1 Score: 107 bits (268), Expect = 4.210e-22
Identity = 56/117 (47.86%), Postives = 69/117 (58.97%), Query Frame = 1 
Query:  139 PYPCHTDVVWMCEACA-VEHCLTSKQALAPFRKAHGFKVYAVPKDGDCFYSSVCMAL---------------ASVGVRATVAQLREWVAASMTEEHLRFYQVHAEANPSASWLDFVR 441
            PYP H +V W C AC   +H LTS+ A+ P ++AHGFKV+ VP DGDCF+SS+  AL               A  G   TV Q+REWVA  M ++ L FY + A ANP   WLDFVR
Sbjct:  258 PYPGHQNVSWTCRACGGAKHHLTSRSAMEPLQRAHGFKVHRVPNDGDCFFSSIKAALPAAELARGDEGGGAAAGAGSALTVRQMREWVAEEMGQDQLDFYILQAGANPEDRWLDFVR 374
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BLAST of jgi.p|Trimin1|350172 vs. uniprot
Match: D8LS81_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS81_ECTSI)

HSP 1 Score: 94.0 bits (232), Expect = 1.270e-17
Identity = 59/141 (41.84%), Postives = 77/141 (54.61%), Query Frame = 1 
Query:  619 PAVQTVEQLQEYIRREGSACGAGDCMWADDAAFAVVAQRLRLGILFVDMERARCAWPYRQLAAC-----EGEPAHYVVLKREGPAGHFVY-------------IGAASGA---------------AAFALRDLPNAVRALW 942
            P V+TVE+L+ ++R EGS  G G+CMWAD  A  VV++RL++ ILFVDMER + AWPYR LA       +GE   +VVLKRE    HFV              +G+ SG                A F+  +LP+ VR LW
Sbjct:  346 PVVETVEELRRFVRLEGSDVGHGNCMWADTHAHHVVSRRLKITILFVDMEREKRAWPYRVLARTVTDSDDGEDERFVVLKREP--SHFVLLETVPSPEDSDGAVGSDSGXXXXXXXXXXKGGRGQACFSRSELPDVVRRLW 484
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|350172 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A836CA53_9STRA1.620e-196100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6H5L3H2_9PHAE4.210e-2247.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LS81_ECTSI1.270e-1741.84Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_58contigContig_58:37403..40362 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|350172|estExt_Genemark1.C_Ctg_580006
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-12_004490.1
TranscriptId350494
TrackFilteredModels1
ProteinId350172
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|350172gene_9354Tribonema minus UTEX_B_3156 geneContig_58 37403..40362 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_9354_1exon_9354_1Tribonema minus UTEX_B_3156 exonContig_58 37403..37651 +
exon_9354_2exon_9354_2Tribonema minus UTEX_B_3156 exonContig_58 37956..38111 +
exon_9354_3exon_9354_3Tribonema minus UTEX_B_3156 exonContig_58 38767..39023 +
exon_9354_4exon_9354_4Tribonema minus UTEX_B_3156 exonContig_58 40020..40362 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_9354CDS_9354Tribonema minus UTEX_B_3156 CDSContig_58 37403..37651 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|350172Trimin1|350172|estExt_Genemark1.C_Ctg_580006Tribonema minus UTEX_B_3156 polypeptideContig_58 37403..40362 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_9354 ID=mRNA_9354|Name=jgi.p|Trimin1|350172|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1005bp|location=Sequence derived from alignment at Contig_58:37403..40362+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGCAGCAGCAGCAACAACAGCAACAGCAGCATCTTCAGCAGGAGCA
GCAGCACCCCAACACTCACCAGCAGCAGCAACAGCAGCCCGTGGACATGG
AGGTTGTGAAGCCAGATGACGCGCCCAGCAGTGCGCCGCCCTACCCATGC
CACACGGACGTGGTGTGGATGTGTGAGGCCTGCGCGGTGGAGCACTGCCT
CACCAGCAAGCAAGCGCTGGCGCCGTTCCGAAAGGCGCATGGCTTCAAGG
TCTACGCGGTCCCCAAGGACGGCGACTGCTTCTACAGCAGCGTGTGCATG
GCGCTGGCGAGCGTGGGCGTGCGCGCGACGGTGGCGCAGCTGCGCGAGTG
GGTCGCCGCGAGCATGACGGAGGAGCACCTGCGCTTCTACCAAGTGCACG
CGGAGGCAAACCCCAGCGCGAGCTGGCTCGATTTCGTGCGAGACACGGCA
GGCGGGCGGCTGCGCGGAAGCTCGGAGGCGGCGGAGGCGGGGCGTACGCG
CGCGCAGCGGGCGGAGGCGCAGGAGCAGAGTGGCGCTGCTGCTGCTGCTG
CTGCTGCTGCTGCTGCCAAGGGGGAATCGGGGGGGCGGACGCGGCGATCC
GGCGGCGAGGCGCGCGGGCCCGCGGTGCAGACCGTTGAGCAGCTGCAGGA
GTACATTCGGAGGGAGGGCAGCGCGTGCGGCGCCGGCGACTGCATGTGGG
CGGACGACGCCGCGTTCGCCGTCGTCGCGCAGCGCCTGCGCCTCGGCATC
CTCTTTGTCGACATGGAGCGCGCGCGCTGCGCGTGGCCGTATCGCCAGCT
GGCCGCCTGCGAGGGCGAACCCGCGCACTACGTCGTGCTCAAGCGCGAGG
GCCCCGCGGGGCACTTTGTGTACATCGGCGCGGCGTCGGGCGCGGCGGCG
TTCGCGCTGCGCGACCTGCCCAACGCGGTGCGCGCGCTGTGGAGCGAGCA
CCTGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGTCGCCGCCGCCGGAGG
CGTAG
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protein sequence of jgi.p|Trimin1|350172

>Trimin1|350172|estExt_Genemark1.C_Ctg_580006 ID=Trimin1|350172|estExt_Genemark1.C_Ctg_580006|Name=jgi.p|Trimin1|350172|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=335bp
MQQQQQQQQQQHLQQEQQHPNTHQQQQQQPVDMEVVKPDDAPSSAPPYPC
HTDVVWMCEACAVEHCLTSKQALAPFRKAHGFKVYAVPKDGDCFYSSVCM
ALASVGVRATVAQLREWVAASMTEEHLRFYQVHAEANPSASWLDFVRDTA
GGRLRGSSEAAEAGRTRAQRAEAQEQSGAAAAAAAAAAAKGESGGRTRRS
GGEARGPAVQTVEQLQEYIRREGSACGAGDCMWADDAAFAVVAQRLRLGI
LFVDMERARCAWPYRQLAACEGEPAHYVVLKREGPAGHFVYIGAASGAAA
FALRDLPNAVRALWSEHLPPPPPPPPPPSPPPEA*
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mRNA from alignment at Contig_58:37403..40362+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9354 ID=mRNA_9354|Name=jgi.p|Trimin1|350172|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2960bp|location=Sequence derived from alignment at Contig_58:37403..40362+ (Tribonema minus UTEX_B_3156 )
ATGCAGCAGCAGCAGCAACAACAGCAACAGCAGCATCTTCAGCAGGAGCA
GCAGCACCCCAACACTCACCAGCAGCAGCAACAGCAGCCCGTGGACATGG
AGGTTGTGAAGCCAGATGACGCGCCCAGCAGTGCGCCGCCCTACCCATGC
CACACGGACGTGGTGTGGATGTGTGAGGCCTGCGCGGTGGAGCACTGCCT
CACCAGCAAGCAAGCGCTGGCGCCGTTCCGAAAGGCGCATGGCTTCAAGG
TACGCCTCCTCTCCATGCTGCGTGTCCCCCGCACTAGCTGGTGTGCATGT
GACGCAGACACCCAGGCGCAGCAGCACGCACATGCCCCGTGCAATGTCAC
AAGCCATGCGCACCTCCACTCTACATATGCTGCAGGTGCATTGCGGCATG
GGCCAGTGGAAATTCAGACCGCCTGCGCTGCGTTGCCGTGCACGATATTC
TCAACAAGCGCTTGGCTCTCATGGTGTCGCCCGCTCATCCGCCGCGCTCC
GCATCGCCCCGCTGCTGTGACTGACGCACGCGGCGCGCCCCCTCGCCGCG
CAGGTCTACGCGGTCCCCAAGGACGGCGACTGCTTCTACAGCAGCGTGTG
CATGGCGCTGGCGAGCGTGGGCGTGCGCGCGACGGTGGCGCAGCTGCGCG
AGTGGGTCGCCGCGAGCATGACGGAGGAGCACCTGCGCTTCTACCAAGTG
CACGCGGAGGTGCGCCGAGAGAGGCGCCGCTGCTGCTGCTGCTGCTGCTG
CTGCTGCTGCTGCTGCTGCTGCTGCGCTGTTATGCGGATGTGCAGGAGCG
ACGCGCACTTAGGGTTGGGGTTTGGGGTTAGGGTTAGGTTTAGCTGCAGG
GCGTCATGCAGACACTACAAGGCTTCTGTTTCTGGTGACATTCAGTAGGT
GCTGGTAAAGCGCCGGGCGCGGTTAGGGTTAGGGTTAGGATAGGGATGAG
GGTTAGGGTTAGGGTTACCGTAGGGGCGCAGGGGGTGCACACAGCCAGCT
ATGATAGCAGACTGCTACTAGCCGCTGTGCTTGCTGCGACTCCGTGTTAG
GGTTAGTGTTAGTTACAGTTGGTGTCGCCATGGACCAATTGCAAGAGTAC
CTGCTGTCCGCAGGGCGTGCAGCATGGCCCTCTGCGGCTTGCATCTCGAT
TTTTCGGCTGATTTCTGTGTAGGGGCTGGCCACACCTCGTGCAGCGTTGT
TGTGCATTACGGGCCTTCGCCGCATTCATCATCGTGCGCACACACCAACA
GTGATGGCGTATTCCAGTGAAGCGCCAGCGACACGCACATGCCTCAGTAA
GAGCGCCCTTCCCGTTGCGCTCCGTCCAACGCCGCACAACACTCCACTCA
CTCTGCGCTCACAGGCAAACCCCAGCGCGAGCTGGCTCGATTTCGTGCGA
GACACGGCAGGCGGGCGGCTGCGCGGAAGCTCGGAGGCGGCGGAGGCGGG
GCGTACGCGCGCGCAGCGGGCGGAGGCGCAGGAGCAGAGTGGCGCTGCTG
CTGCTGCTGCTGCTGCTGCTGCTGCCAAGGGGGAATCGGGGGGGCGGACG
CGGCGATCCGGCGGCGAGGCGCGCGGGCCCGCGGTGCAGACCGTTGAGCA
GCTGCAGGAGTACATTCGGAGGTATGTATGTATGTTTGGCATGGTGTGGT
GAGGGGGGGTGGGGGGGGTGGGGGGTGGGGGGGGGGGGGTCGCGCTTGTG
GATGGCCTCGATCCCTGACTGGCTTTGAGTGGAGCAGTGCCTGTGTTGCT
GCTGCTGAAGGGAATCTTGCAGCCGTGCTCAGGAGGAGCGCCAGTTTTGT
GGATGGCTGGAAAGATGCGCATGTGTATGTACGTAGGAGTACGTTATCGT
CGACTTGCCTCTCTGCATGCGAGTTCAGCAGAGCAGGCCTCGCACTGCAG
CAATATGTGGTTTGCACGCACCCCCAAACACACTCTCAATCCGTGAGCGT
GGCCGCAACGCCGCGCGATGGCGCCAGTGCTGTTGTGCGCTCAGAAGGCC
GGCCAGCACCAAAGCGTTGCTGGCGCTTGAAGCTTGGTCAGATGCAGCGA
CCGCGCCTGCGTTGAGGCTTTGTTGATCTACAACAGCGCGTTACCTCAGC
CACGCGCAGACCCGTACCCCGCGCGCCACATCAGGCAGTGGTGCCCCGCC
GTCTCTGCGCTCAGAGGGCGCTCGTGACTGCACGAGGGCACACGCTCACG
CGTTGCAGCGCACGCTCACGCGTTGCAGCGCACGCCCCAACCCCCAATGC
GCAGCGTCGCGTGTGAGCGGTGCGTGCCAGAACCTGTATAGACGTGTCCG
AAAGCGACCTGGTCTGAATCAGTGCTCCCGGGAGCAACCCGCGAAAGACT
CTGAGCCCTTGCTTGAACCACCAGGAGCGCCTATGCGTCGCGCGACTCAC
GCAGCGCTGCTCACGCGCTTGCACGCGGCCTGTGTGCACGCCGCAGGGAG
GGCTGCGCATATTTGCGCCAGCGAGTGCATGTGGGCGGACGACGCGGCGT
TCGCCGTCGTCGCGCACGCGCCGCACACACCCAATGCGCTGCGCCACGCC
CCCCCTCTCACACACCTGATGCGCAGCGCCACTCACACGCGCGCCGCTCA
CACGCTGCGCCGCGCAGGGAGGGCAGCGCGTGCGGCGCCGGCGACTGCAT
GTGGGCGGACGACGCCGCGTTCGCCGTCGTCGCGCAGCGCCTGCGCCTCG
GCATCCTCTTTGTCGACATGGAGCGCGCGCGCTGCGCGTGGCCGTATCGC
CAGCTGGCCGCCTGCGAGGGCGAACCCGCGCACTACGTCGTGCTCAAGCG
CGAGGGCCCCGCGGGGCACTTTGTGTACATCGGCGCGGCGTCGGGCGCGG
CGGCGTTCGCGCTGCGCGACCTGCCCAACGCGGTGCGCGCGCTGTGGAGC
GAGCACCTGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGTCGCCGCCGCC
GGAGGCGTAG
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Coding sequence (CDS) from alignment at Contig_58:37403..40362+

>mRNA_9354 ID=mRNA_9354|Name=jgi.p|Trimin1|350172|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1005bp|location=Sequence derived from alignment at Contig_58:37403..40362+ (Tribonema minus UTEX_B_3156 )
ATGCAGCAGCAGCAGCAACAACAGCAACAGCAGCATCTTCAGCAGGAGCA
GCAGCACCCCAACACTCACCAGCAGCAGCAACAGCAGCCCGTGGACATGG
AGGTTGTGAAGCCAGATGACGCGCCCAGCAGTGCGCCGCCCTACCCATGC
CACACGGACGTGGTGTGGATGTGTGAGGCCTGCGCGGTGGAGCACTGCCT
CACCAGCAAGCAAGCGCTGGCGCCGTTCCGAAAGGCGCATGGCTTCAAGG
TCTACGCGGTCCCCAAGGACGGCGACTGCTTCTACAGCAGCGTGTGCATG
GCGCTGGCGAGCGTGGGCGTGCGCGCGACGGTGGCGCAGCTGCGCGAGTG
GGTCGCCGCGAGCATGACGGAGGAGCACCTGCGCTTCTACCAAGTGCACG
CGGAGGCAAACCCCAGCGCGAGCTGGCTCGATTTCGTGCGAGACACGGCA
GGCGGGCGGCTGCGCGGAAGCTCGGAGGCGGCGGAGGCGGGGCGTACGCG
CGCGCAGCGGGCGGAGGCGCAGGAGCAGAGTGGCGCTGCTGCTGCTGCTG
CTGCTGCTGCTGCTGCCAAGGGGGAATCGGGGGGGCGGACGCGGCGATCC
GGCGGCGAGGCGCGCGGGCCCGCGGTGCAGACCGTTGAGCAGCTGCAGGA
GTACATTCGGAGGGAGGGCAGCGCGTGCGGCGCCGGCGACTGCATGTGGG
CGGACGACGCCGCGTTCGCCGTCGTCGCGCAGCGCCTGCGCCTCGGCATC
CTCTTTGTCGACATGGAGCGCGCGCGCTGCGCGTGGCCGTATCGCCAGCT
GGCCGCCTGCGAGGGCGAACCCGCGCACTACGTCGTGCTCAAGCGCGAGG
GCCCCGCGGGGCACTTTGTGTACATCGGCGCGGCGTCGGGCGCGGCGGCG
TTCGCGCTGCGCGACCTGCCCAACGCGGTGCGCGCGCTGTGGAGCGAGCA
CCTGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGTCGCCGCCGCCGGAGG
CGTAG
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