Trimin1|350172|estExt_Genemark1.C_Ctg_580006 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	jgi.p\|Trimin1\|350172
Unique Name	Trimin1\|350172\|estExt_Genemark1.C_Ctg_580006
Type	polypeptide
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length	335

Homology

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BLAST of jgi.p|Trimin1|350172 vs. uniprot
Match: A0A836CA53_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CA53_9STRA)

HSP 1 Score: 551 bits (1421), Expect = 1.620e-196
Identity = 291/291 (100.00%), Postives = 291/291 (100.00%), Query Frame = 0

Query:   30 PVDMEVVKPDDAPSSAPPYPCHTDVVWMCEACAVEHCLTSKQALAPFRKAHGFKVYAVPKDGDCFYSSVCMALASVGVRATVAQLREWVAASMTEEHLRFYQVHAEANPSASWLDFVRDTAGGRLRGSSEAAEAGRTRAQRAEAQEXXXXXXXXXXXXXXKGESGGRTRRSGGEARGPAVQTVEQLQEYIRREGSACGAGDCMWADDAAFAVVAQRLRLGILFVDMERARCAWPYRQLAACEGEPAHYVVLKREGPAGHFVYIGAASGAAAFALRDLPNAVRALWSEHLPP 320
            PVDMEVVKPDDAPSSAPPYPCHTDVVWMCEACAVEHCLTSKQALAPFRKAHGFKVYAVPKDGDCFYSSVCMALASVGVRATVAQLREWVAASMTEEHLRFYQVHAEANPSASWLDFVRDTAGGRLRGSSEAAEAGRTRAQRAEAQEXXXXXXXXXXXXXXKGESGGRTRRSGGEARGPAVQTVEQLQEYIRREGSACGAGDCMWADDAAFAVVAQRLRLGILFVDMERARCAWPYRQLAACEGEPAHYVVLKREGPAGHFVYIGAASGAAAFALRDLPNAVRALWSEHLPP
Sbjct:   30 PVDMEVVKPDDAPSSAPPYPCHTDVVWMCEACAVEHCLTSKQALAPFRKAHGFKVYAVPKDGDCFYSSVCMALASVGVRATVAQLREWVAASMTEEHLRFYQVHAEANPSASWLDFVRDTAGGRLRGSSEAAEAGRTRAQRAEAQEXXXXXXXXXXXXXXKGESGGRTRRSGGEARGPAVQTVEQLQEYIRREGSACGAGDCMWADDAAFAVVAQRLRLGILFVDMERARCAWPYRQLAACEGEPAHYVVLKREGPAGHFVYIGAASGAAAFALRDLPNAVRALWSEHLPP 320

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BLAST of jgi.p|Trimin1|350172 vs. uniprot
Match: A0A6H5L3H2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3H2_9PHAE)

HSP 1 Score: 107 bits (268), Expect = 4.210e-22
Identity = 56/117 (47.86%), Postives = 69/117 (58.97%), Query Frame = 0

Query:   47 PYPCHTDVVWMCEACA-VEHCLTSKQALAPFRKAHGFKVYAVPKDGDCFYSSVCMAL---------------ASVGVRATVAQLREWVAASMTEEHLRFYQVHAEANPSASWLDFVR 147
            PYP H +V W C AC   +H LTS+ A+ P ++AHGFKV+ VP DGDCF+SS+  AL               A  G   TV Q+REWVA  M ++ L FY + A ANP   WLDFVR
Sbjct:  258 PYPGHQNVSWTCRACGGAKHHLTSRSAMEPLQRAHGFKVHRVPNDGDCFFSSIKAALPAAELARGDEGGGAAAGAGSALTVRQMREWVAEEMGQDQLDFYILQAGANPEDRWLDFVR 374

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BLAST of jgi.p|Trimin1|350172 vs. uniprot
Match: D8LS81_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS81_ECTSI)

HSP 1 Score: 94.0 bits (232), Expect = 1.270e-17
Identity = 59/141 (41.84%), Postives = 77/141 (54.61%), Query Frame = 0

Query:  207 PAVQTVEQLQEYIRREGSACGAGDCMWADDAAFAVVAQRLRLGILFVDMERARCAWPYRQLAAC-----EGEPAHYVVLKREGPAGHFVY-------------IGAASGA---------------AAFALRDLPNAVRALW 314
            P V+TVE+L+ ++R EGS  G G+CMWAD  A  VV++RL++ ILFVDMER + AWPYR LA       +GE   +VVLKRE    HFV              +G+ SG                A F+  +LP+ VR LW
Sbjct:  346 PVVETVEELRRFVRLEGSDVGHGNCMWADTHAHHVVSRRLKITILFVDMEREKRAWPYRVLARTVTDSDDGEDERFVVLKREP--SHFVLLETVPSPEDSDGAVGSDSGXXXXXXXXXXKGGRGQACFSRSELPDVVRRLW 484

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|350172 vs. uniprot

BLAST of jgi.p|Trimin1|350172 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3


Match Name	E-value	Identity	Description
A0A836CA53_9STRA	1.620e-196	100.00	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
A0A6H5L3H2_9PHAE	4.210e-22	47.86	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
D8LS81_ECTSI	1.270e-17	41.84	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.90.70.80		coord: 63..283 e-value: 2.2E-7 score: 32.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 314..334
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 156..176
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 316..334
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..32
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..44

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_58	contig	Contig_58:37403..40362 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|350172	mRNA_9354	Tribonema minus UTEX_B_3156	mRNA	Contig_58 37403..40362 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Trimin1|350172|estExt_Genemark1.C_Ctg_580006 ID=Trimin1|350172|estExt_Genemark1.C_Ctg_580006|Name=jgi.p|Trimin1|350172|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=335bp
MQQQQQQQQQQHLQQEQQHPNTHQQQQQQPVDMEVVKPDDAPSSAPPYPC
HTDVVWMCEACAVEHCLTSKQALAPFRKAHGFKVYAVPKDGDCFYSSVCM
ALASVGVRATVAQLREWVAASMTEEHLRFYQVHAEANPSASWLDFVRDTA
GGRLRGSSEAAEAGRTRAQRAEAQEQSGAAAAAAAAAAAKGESGGRTRRS
GGEARGPAVQTVEQLQEYIRREGSACGAGDCMWADDAAFAVVAQRLRLGI
LFVDMERARCAWPYRQLAACEGEPAHYVVLKREGPAGHFVYIGAASGAAA
FALRDLPNAVRALWSEHLPPPPPPPPPPSPPPEA*