mRNA_11931 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|8701
Unique NamemRNA_11931
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|8701 vs. uniprot
Match: A0A836CNH9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNH9_9STRA)

HSP 1 Score: 166 bits (419), Expect = 5.770e-51
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 3 
Query:  156 MVLVSCLLSMHCVLCLSSPCNLLPGHDVYHVQGMDWRQTCSALAQLSTEQQPAKDGKSSTYVIYVLEVPEAGPVEKRVQEV 398
            MVLVSCLLSMHCVLCLSSPCNLLPGHDVYHVQGMDWRQTCSALAQLSTEQQPAKDGKSSTYVIYVLEVPEAGPVEKRVQEV
Sbjct:    1 MVLVSCLLSMHCVLCLSSPCNLLPGHDVYHVQGMDWRQTCSALAQLSTEQQPAKDGKSSTYVIYVLEVPEAGPVEKRVQEV 81
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BLAST of jgi.p|Trimin1|8701 vs. uniprot
Match: A0A836CG93_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CG93_9STRA)

HSP 1 Score: 142 bits (358), Expect = 1.750e-41
Identity = 69/76 (90.79%), Postives = 72/76 (94.74%), Query Frame = 3 
Query:  111 WNISAHAPFLIIVLLMVLVSCLLSMHCVLCLSSPCNLLPGHDVYHVQGMDWRQTCSALAQLSTEQQPAKDGKSSTY 338
            WNISAHAPFLIIVLLMVLVSCLLSMH VLCLSSPCNLLPGHDVYHVQGMDWRQTC+ALAQLSTEQQPAKD  S+ +
Sbjct:    7 WNISAHAPFLIIVLLMVLVSCLLSMHSVLCLSSPCNLLPGHDVYHVQGMDWRQTCTALAQLSTEQQPAKDAASTQH 82
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|8701 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A836CNH9_9STRA5.770e-51100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CG93_9STRA1.750e-4190.79Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_111contigContig_111:508322..508756 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|8701|CE8700_11
Hectar predicted targeting categorysignal peptide
TranscriptId9023
TrackFilteredModels1
ProteinId8701
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|8701gene_11931Tribonema minus UTEX_B_3156 geneContig_111 508322..508756 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_11931_1exon_11931_1Tribonema minus UTEX_B_3156 exonContig_111 508322..508756 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_11931UTR5_11931Tribonema minus UTEX_B_3156 five_prime_UTRContig_111 508322..508476 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_11931CDS_11931Tribonema minus UTEX_B_3156 CDSContig_111 508477..508722 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_11931UTR3_11931Tribonema minus UTEX_B_3156 three_prime_UTRContig_111 508723..508756 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|8701Trimin1|8701|CE8700_11Tribonema minus UTEX_B_3156 polypeptideContig_111 508477..508722 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_11931 ID=mRNA_11931|Name=jgi.p|Trimin1|8701|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=435bp|location=Sequence derived from alignment at Contig_111:508322..508756+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CTCACACCGTGCATAATATTCATACTCGAATGTGACAGACCTCCACCTCT
TCGAGCGGGCTAGCTCCCGGGTGTGGGCTTCAGCCTAACGGCTGAAGTTG
ATACCAATGATGGAATATAAGTGCACATGCACCATTTCTTATTATTGTTC
TATTGATGGTTTTGGTATCTTGCTTGTTGTCAATGCATTGTGTACTCTGT
CTTTCATCCCCCTGCAATCTGCTTCCTGGTCATGACGTGTACCATGTGCA
GGGCATGGACTGGCGCCAAACTTGTTCAGCTCTTGCTCAACTGTCAACAG
AACAACAGCCTGCCAAGGATGGTAAGAGCTCAACATATGTCATCTATGTT
CTTGAAGTTCCCGAGGCTGGGCCTGTTGAGAAAAGAGTTCAAGAAGTGTA
AATAATTGTGTCTCATGATCGAAAGTGTTGGTGGG
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protein sequence of jgi.p|Trimin1|8701

>Trimin1|8701|CE8700_11 ID=Trimin1|8701|CE8700_11|Name=jgi.p|Trimin1|8701|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=82bp
MVLVSCLLSMHCVLCLSSPCNLLPGHDVYHVQGMDWRQTCSALAQLSTEQ
QPAKDGKSSTYVIYVLEVPEAGPVEKRVQEV*
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mRNA from alignment at Contig_111:508322..508756+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_11931 ID=mRNA_11931|Name=jgi.p|Trimin1|8701|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=435bp|location=Sequence derived from alignment at Contig_111:508322..508756+ (Tribonema minus UTEX_B_3156 )
CTCACACCGTGCATAATATTCATACTCGAATGTGACAGACCTCCACCTCT
TCGAGCGGGCTAGCTCCCGGGTGTGGGCTTCAGCCTAACGGCTGAAGTTG
ATACCAATGATGGAATATAAGTGCACATGCACCATTTCTTATTATTGTTC
TATTGATGGTTTTGGTATCTTGCTTGTTGTCAATGCATTGTGTACTCTGT
CTTTCATCCCCCTGCAATCTGCTTCCTGGTCATGACGTGTACCATGTGCA
GGGCATGGACTGGCGCCAAACTTGTTCAGCTCTTGCTCAACTGTCAACAG
AACAACAGCCTGCCAAGGATGGTAAGAGCTCAACATATGTCATCTATGTT
CTTGAAGTTCCCGAGGCTGGGCCTGTTGAGAAAAGAGTTCAAGAAGTGTA
AATAATTGTGTCTCATGATCGAAAGTGTTGGTGGG
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Coding sequence (CDS) from alignment at Contig_111:508322..508756+

>mRNA_11931 ID=mRNA_11931|Name=jgi.p|Trimin1|8701|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=246bp|location=Sequence derived from alignment at Contig_111:508322..508756+ (Tribonema minus UTEX_B_3156 )
ATGGTTTTGGTATCTTGCTTGTTGTCAATGCATTGTGTACTCTGTCTTTC
ATCCCCCTGCAATCTGCTTCCTGGTCATGACGTGTACCATGTGCAGGGCA
TGGACTGGCGCCAAACTTGTTCAGCTCTTGCTCAACTGTCAACAGAACAA
CAGCCTGCCAAGGATGGTAAGAGCTCAACATATGTCATCTATGTTCTTGA
AGTTCCCGAGGCTGGGCCTGTTGAGAAAAGAGTTCAAGAAGTGTAA
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