mRNA_19080 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|76188
Unique NamemRNA_19080
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|76188 vs. uniprot
Match: A0A835YXU6_9STRA (Ankyrin repeat-containing domain protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXU6_9STRA)

HSP 1 Score: 338 bits (867), Expect = 9.220e-113
Identity = 291/291 (100.00%), Postives = 291/291 (100.00%), Query Frame = 1 
Query:  127 MDVNAPWGPNGRTALHAAAEAGSAESLEVLLRAGADSYAADNGGASPLILXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDADYANTDLGGGEHALMLAAESGSVPAVRLLLAAGARLNRADKAGRTALWAAARNGHALVVQLLLSQPGIKHIRSYCRRSTTPLQEAQAAHHATCVALLSAHVQXXXXXXXXXXXXXXXXXXXXXXXXXVQQHTAPAXXXXXXXXXXXXXXXXXXXXXRSRRQPHTGLMPGSGDRVAGAKSLPCQQVLVH 999
            MDVNAPWGPNGRTALHAAAEAGSAESLEVLLRAGADSYAADNGGASPLILXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDADYANTDLGGGEHALMLAAESGSVPAVRLLLAAGARLNRADKAGRTALWAAARNGHALVVQLLLSQPGIKHIRSYCRRSTTPLQEAQAAHHATCVALLSAHVQXXXXXXXXXXXXXXXXXXXXXXXXXVQQHTAPAXXXXXXXXXXXXXXXXXXXXXRSRRQPHTGLMPGSGDRVAGAKSLPCQQVLVH
Sbjct:    1 MDVNAPWGPNGRTALHAAAEAGSAESLEVLLRAGADSYAADNGGASPLILXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDADYANTDLGGGEHALMLAAESGSVPAVRLLLAAGARLNRADKAGRTALWAAARNGHALVVQLLLSQPGIKHIRSYCRRSTTPLQEAQAAHHATCVALLSAHVQXXXXXXXXXXXXXXXXXXXXXXXXXVQQHTAPAXXXXXXXXXXXXXXXXXXXXXRSRRQPHTGLMPGSGDRVAGAKSLPCQQVLVH 291
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BLAST of jgi.p|Trimin1|76188 vs. uniprot
Match: A0A383VD65_TETOB (Uncharacterized protein n=2 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383VD65_TETOB)

HSP 1 Score: 127 bits (319), Expect = 1.170e-29
Identity = 142/229 (62.01%), Postives = 157/229 (68.56%), Query Frame = 1 
Query:   52 QHLQRAAATGDIGQLEQLCSCKGNGMDVNAPWGPNGRTALHAAAEAGSAESLEVLLRAGADSYAADNGGASPLILXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDADYANTDLGGGEHALMLAAESGSVPAVRLLLAAGARLNRADKAGRTALWAAARNGHALVVQLLLSQPGIKHIRSYCRRSTTPLQEAQAAHHATCVALLSAHV 738
            Q L  AAA GD+ +L QL   +G  +DVN P GP GRTALHAAAE G      VLL  GADSY  D    S L+ XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX ADY N+DLG GE                     GAR+NRADK GRTALW A+R GH  VV+LLL QP IKHI+ +    T+PLQ AQAA HA   +LL+AH+
Sbjct:   94 QQLLHAAAHGDVSKLRQLVQQQG--VDVNKPCGPQGRTALHAAAEHGQCSCCSVLLELGADSYVYDERQVSALMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXADYHNSDLGAGEXXXXXXXXXXXXXXXXXXXXXGARVNRADKEGRTALWVASRGGHMEVVRLLLRQPRIKHIQHFIS-GTSPLQTAQAAGHAGVASLLAAHL 319
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BLAST of jgi.p|Trimin1|76188 vs. uniprot
Match: A0A0D2JU21_9CHLO (Uncharacterized protein n=1 Tax=Monoraphidium neglectum TaxID=145388 RepID=A0A0D2JU21_9CHLO)

HSP 1 Score: 69.3 bits (168), Expect = 4.040e-10
Identity = 102/185 (55.14%), Postives = 122/185 (65.95%), Query Frame = 1 
Query:   46 PLQHLQRAAATGDIGQLEQLCSCKGNGMDVNAPWGPNGRTALHAAAEAGSAESLEVLLRAGADSYAADNGGASPLILXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDA---DYANTDLGGGEHALMLAAESGSVPAVRLLLAAGARLNRADKAGRTALWAAAR 591
            P Q L +AAA GD+ Q+  + +    G  ++A    +G TAL AA+ AG+A  +  LLR GAD+YA  +GGA+P+ L  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX             +  +  +  GEHAL LAA SG   AV +LL  GAR NR D  GR+ALW AAR
Sbjct:   34 PEQRLVQAAAAGDLRQV--VAALDEGGAQIDARDAHSGLTALAAASAAGAAPVVVELLRRGADAYAYADGGATPMTLAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLYLSEGCFVPIRDEVVSESIRTGEHALQLAARSGHAGAVDVLLRLGARANRVDACGRSALWEAAR 216
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BLAST of jgi.p|Trimin1|76188 vs. uniprot
Match: A0A370DLD0_9GAMM (Ankyrin repeat domain-containing protein n=8 Tax=Bacteria TaxID=2 RepID=A0A370DLD0_9GAMM)

HSP 1 Score: 54.7 bits (130), Expect = 4.330e-5
Identity = 36/80 (45.00%), Postives = 47/80 (58.75%), Query Frame = 1 
Query:   31 SSAEPPLQHLQRAAATGDIGQLEQLCSCKGNGMDVNAPWGPNGRTALHAAAEAGSAESLEVLLRAGADSYAADNGGASPL 270
            S+ EPP  +L RA   GDI Q+E+         DVNAP GP+GR+ALH AAE G    +++LL+ GA     D  G +PL
Sbjct:   20 STPEPPTVNLYRAVHVGDIDQIERNLYWD---ADVNAP-GPDGRSALHVAAEKGRVVVIKILLKNGAAIDQLDAAGQTPL 95
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|76188 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A835YXU6_9STRA9.220e-113100.00Ankyrin repeat-containing domain protein n=1 Tax=T... [more]
A0A383VD65_TETOB1.170e-2962.01Uncharacterized protein n=2 Tax=Tetradesmus obliqu... [more]
A0A0D2JU21_9CHLO4.040e-1055.14Uncharacterized protein n=1 Tax=Monoraphidium negl... [more]
A0A370DLD0_9GAMM4.330e-545.00Ankyrin repeat domain-containing protein n=8 Tax=B... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_543contigContig_543:9322..11011 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|76188|CE76187_92
BRITEko00000,ko00001,ko01000
KEGG rclassRC00010,RC02798
KEGG ReactionR00256,R01579
KEGG Pathwayko00220,ko00250,ko00471,ko01100,ko04724,ko04727,ko04964,ko05206,ko05230,map00220,map00250,map00471,map01100,map04724,map04727,map04964,map05206,map05230
KEGG koko:K01425
EC3.5.1.2
GOsGO:0001967,GO:0002087,GO:0003008,GO:0003674,GO:0003824,GO:0004359,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0005829,GO:0006082,GO:0006520,GO:0006536,GO:0006537,GO:0006541,GO:0006543,GO:0006807,GO:0006810,GO:0006811,GO:0006820,GO:0006835,GO:0006865,GO:0007154,GO:0007267,GO:0007268,GO:0007610,GO:0007631,GO:0008150,GO:0008152,GO:0008652,GO:0009056,GO:0009058,GO:0009063,GO:0009064,GO:0009065,GO:0009084,GO:0009987,GO:0010941,GO:0014047,GO:0015711,GO:0015800,GO:0015849,GO:0016043,GO:0016053,GO:0016054,GO:0016787,GO:0016810,GO:0016811,GO:0019752,GO:0022607,GO:0023052,GO:0031974,GO:0032501,GO:0032940,GO:0042802,GO:0042981,GO:0043067,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043436,GO:0043576,GO:0043648,GO:0043650,GO:0043933,GO:0044057,GO:0044065,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044281,GO:0044282,GO:0044283,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046394,GO:0046395,GO:0046717,GO:0046903,GO:0046942,GO:0050789,GO:0050794,GO:0050877,GO:0051179,GO:0051234,GO:0051239,GO:0051259,GO:0051260,GO:0051262,GO:0051289,GO:0051704,GO:0051705,GO:0065003,GO:0065007,GO:0070013,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0072593,GO:0098916,GO:0099536,GO:0099537,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576,GO:1901605,GO:1901606,GO:1901607
Preferred nameGLS
Descriptionglutamine catabolic process
COG categoryE
Max annot lvl33154|Opisthokonta
EggNOG OGsCOG2066@1|root,KOG0506@2759|Eukaryota,38GZ9@33154|Opisthokonta
Evalue0.000117
Seed ortholog192875.XP_004347874.1
Hectar predicted targeting categoryother localisation
TranscriptId76510
TrackFilteredModels1
ProteinId76188
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|76188gene_19080Tribonema minus UTEX_B_3156 geneContig_543 9322..11011 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|76188Trimin1|76188|CE76187_92Tribonema minus UTEX_B_3156 polypeptideContig_543 9646..10975 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_19080_1exon_19080_1Tribonema minus UTEX_B_3156 exonContig_543 9322..9414 +
exon_19080_2exon_19080_2Tribonema minus UTEX_B_3156 exonContig_543 9613..9828 +
exon_19080_3exon_19080_3Tribonema minus UTEX_B_3156 exonContig_543 10070..10350 +
exon_19080_4exon_19080_4Tribonema minus UTEX_B_3156 exonContig_543 10564..11011 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_19080UTR5_19080Tribonema minus UTEX_B_3156 five_prime_UTRContig_543 9322..9414 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_19080CDS_19080Tribonema minus UTEX_B_3156 CDSContig_543 9646..9828 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_19080UTR3_19080Tribonema minus UTEX_B_3156 three_prime_UTRContig_543 10976..11011 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_19080 ID=mRNA_19080|Name=jgi.p|Trimin1|76188|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1038bp|location=Sequence derived from alignment at Contig_543:9322..11011+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GCGTAGGCTACACCACAGGCAGCCGAAGACTCATCCGCTGAGCCCCCTCT
GCAGCACTTGCAGCGGGCAGCAGCAACCGGGGACATTGGTCAGTTGGAAC
AGCTGTGCTCCTGCAAAGGCAACGGCATGGACGTCAACGCCCCCTGGGGC
CCCAATGGCCGCACGGCTCTGCATGCAGCAGCAGAGGCTGGCAGTGCCGA
GAGTTTGGAGGTGCTGCTGCGCGCTGGTGCAGACAGTTATGCTGCTGACA
ATGGCGGTGCATCACCACTCATCTTGGCAGCTGCAGGGGGCCATGCAGCA
GCAGTCAAGGTGCTGCTGGCAGCAGGCGCCGACCCCTTTCATGTCGACCA
TGGGGGCATCAACCCACTTCTGTGCGCGGCACGTGTTGGCAGCACGTCGT
GCATGCAGCTGCTGCTCAATGAAGGTGTGGATGCAGACTATGCCAACACA
GACCTGGGCGGTGGGGAGCACGCCTTGATGCTGGCTGCAGAGAGTGGCAG
TGTGCCGGCTGTGAGGCTGCTGTTGGCTGCTGGCGCGCGGCTCAACAGAG
CCGACAAGGCTGGACGCACAGCTCTGTGGGCTGCAGCAAGGAATGGCCAC
GCGCTTGTGGTGCAGCTGCTGCTGTCCCAACCAGGTATCAAGCACATACG
CAGCTACTGCCGCCGCAGCACCACGCCGCTACAGGAGGCTCAAGCAGCAC
ACCACGCCACCTGTGTGGCACTGCTGTCAGCACATGTGCAACAGCAACAG
CAGCAGCCGCTGGTGCAGCAGCAGCAACAACAGCAGGAGCAGCAGCTAGT
GCAGCAGCAGCCGCCGGTGCAGCAGCACACAGCACCAGCGCACAGCAGAC
GGCCTCAGCAACGCCCTCCTTGTGCCAAGCCCCAGCAAAACCAGCAGCAG
TCTCGCAGCCGGCGCCAGCCACACACTGGACTGATGCCTGGCAGCGGTGA
TCGGGTGGCAGGTGCCAAGTCTTTGCCCTGCCAGCAGGTGTTGGTGCACT
GAGAGGGTTGTGCCTGGGCATCTGCAGTAGCCAGCTGG
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protein sequence of jgi.p|Trimin1|76188

>Trimin1|76188|CE76187_92 ID=Trimin1|76188|CE76187_92|Name=jgi.p|Trimin1|76188|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=292bp
MDVNAPWGPNGRTALHAAAEAGSAESLEVLLRAGADSYAADNGGASPLIL
AAAGGHAAAVKVLLAAGADPFHVDHGGINPLLCAARVGSTSCMQLLLNEG
VDADYANTDLGGGEHALMLAAESGSVPAVRLLLAAGARLNRADKAGRTAL
WAAARNGHALVVQLLLSQPGIKHIRSYCRRSTTPLQEAQAAHHATCVALL
SAHVQQQQQQPLVQQQQQQQEQQLVQQQPPVQQHTAPAHSRRPQQRPPCA
KPQQNQQQSRSRRQPHTGLMPGSGDRVAGAKSLPCQQVLVH*
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mRNA from alignment at Contig_543:9322..11011+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_19080 ID=mRNA_19080|Name=jgi.p|Trimin1|76188|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1690bp|location=Sequence derived from alignment at Contig_543:9322..11011+ (Tribonema minus UTEX_B_3156 )
GCGTAGGCTACACCACAGGCAGCCGAAGACTCATCCGCTGAGCCCCCTCT
GCAGCACTTGCAGCGGGCAGCAGCAACCGGGGACATTGGTCAGGTGGGTT
GCATACTTTCACCAAACAGCTGGCCTGATCATGCGGCCCATCCTGCACAA
CAACAAACGTTTTGAGGCAAAGATATCATGTTGACCAACCTGTCATTGCT
GTGGATGATGCCTGGTTGCTGTGGATGATGCCTGTTTGCAACATGACCGT
CAAGCATGAGTGCTGGCGTCTGTTTCATTCCGTGTGTGCAGTTGGAACAG
CTGTGCTCCTGCAAAGGCAACGGCATGGACGTCAACGCCCCCTGGGGCCC
CAATGGCCGCACGGCTCTGCATGCAGCAGCAGAGGCTGGCAGTGCCGAGA
GTTTGGAGGTGCTGCTGCGCGCTGGTGCAGACAGTTATGCTGCTGACAAT
GGCGGTGCATCACCACTCATCTTGGCAGCTGCAGGGGGCCATGCAGCAGC
AGTCAAGGTGAGACAGCGGTGCCAAGTGTATCTTTCTGCCACATCTATTG
ATGTCCGAGGTCATTGGTTCCAACTTTGAGGTGTTTGGTACTTGGCTGCA
GAGCAGCTGCTGTTTCGTGCCGTCACAGCTACTTGGATTGTGCACCACCC
AACTATGCCTCCTTTTCTTTAGATGGGAAGGGCAGCTGAAATTGGATGAG
AAGAGAGAACTGATGAGCAGGCATCGCAATGCATTGCTTGCTTTGCAGGT
GCTGCTGGCAGCAGGCGCCGACCCCTTTCATGTCGACCATGGGGGCATCA
ACCCACTTCTGTGCGCGGCACGTGTTGGCAGCACGTCGTGCATGCAGCTG
CTGCTCAATGAAGGTGTGGATGCAGACTATGCCAACACAGACCTGGGCGG
TGGGGAGCACGCCTTGATGCTGGCTGCAGAGAGTGGCAGTGTGCCGGCTG
TGAGGCTGCTGTTGGCTGCTGGCGCGCGGCTCAACAGAGCCGACAAGGCT
GGACGCACAGCTCTGTGGGCTGCAGCAAGGTCAGCACTGTAGTCATGCTC
CACCGCCGGTAGGGTGGCTGCGCCCTGCAGTTGGACAGCCTGATAGATGT
TGCACTGGCAGCTGACATTGGTGCCAGCCTGGCAGTGGACCTGCATCAGT
GGAGTGATGAAGTCTGTGTAACCCTTTGGTGATGGGGCTCAGTGCACCAA
ACGTCAGGCGATTGATGTACCCTGCATTGCTGCCGCACGCAGGAATGGCC
ACGCGCTTGTGGTGCAGCTGCTGCTGTCCCAACCAGGTATCAAGCACATA
CGCAGCTACTGCCGCCGCAGCACCACGCCGCTACAGGAGGCTCAAGCAGC
ACACCACGCCACCTGTGTGGCACTGCTGTCAGCACATGTGCAACAGCAAC
AGCAGCAGCCGCTGGTGCAGCAGCAGCAACAACAGCAGGAGCAGCAGCTA
GTGCAGCAGCAGCCGCCGGTGCAGCAGCACACAGCACCAGCGCACAGCAG
ACGGCCTCAGCAACGCCCTCCTTGTGCCAAGCCCCAGCAAAACCAGCAGC
AGTCTCGCAGCCGGCGCCAGCCACACACTGGACTGATGCCTGGCAGCGGT
GATCGGGTGGCAGGTGCCAAGTCTTTGCCCTGCCAGCAGGTGTTGGTGCA
CTGAGAGGGTTGTGCCTGGGCATCTGCAGTAGCCAGCTGG
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Coding sequence (CDS) from alignment at Contig_543:9322..11011+

>mRNA_19080 ID=mRNA_19080|Name=jgi.p|Trimin1|76188|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=876bp|location=Sequence derived from alignment at Contig_543:9322..11011+ (Tribonema minus UTEX_B_3156 )
ATGGACGTCAACGCCCCCTGGGGCCCCAATGGCCGCACGGCTCTGCATGC
AGCAGCAGAGGCTGGCAGTGCCGAGAGTTTGGAGGTGCTGCTGCGCGCTG
GTGCAGACAGTTATGCTGCTGACAATGGCGGTGCATCACCACTCATCTTG
GCAGCTGCAGGGGGCCATGCAGCAGCAGTCAAGGTGCTGCTGGCAGCAGG
CGCCGACCCCTTTCATGTCGACCATGGGGGCATCAACCCACTTCTGTGCG
CGGCACGTGTTGGCAGCACGTCGTGCATGCAGCTGCTGCTCAATGAAGGT
GTGGATGCAGACTATGCCAACACAGACCTGGGCGGTGGGGAGCACGCCTT
GATGCTGGCTGCAGAGAGTGGCAGTGTGCCGGCTGTGAGGCTGCTGTTGG
CTGCTGGCGCGCGGCTCAACAGAGCCGACAAGGCTGGACGCACAGCTCTG
TGGGCTGCAGCAAGGAATGGCCACGCGCTTGTGGTGCAGCTGCTGCTGTC
CCAACCAGGTATCAAGCACATACGCAGCTACTGCCGCCGCAGCACCACGC
CGCTACAGGAGGCTCAAGCAGCACACCACGCCACCTGTGTGGCACTGCTG
TCAGCACATGTGCAACAGCAACAGCAGCAGCCGCTGGTGCAGCAGCAGCA
ACAACAGCAGGAGCAGCAGCTAGTGCAGCAGCAGCCGCCGGTGCAGCAGC
ACACAGCACCAGCGCACAGCAGACGGCCTCAGCAACGCCCTCCTTGTGCC
AAGCCCCAGCAAAACCAGCAGCAGTCTCGCAGCCGGCGCCAGCCACACAC
TGGACTGATGCCTGGCAGCGGTGATCGGGTGGCAGGTGCCAAGTCTTTGC
CCTGCCAGCAGGTGTTGGTGCACTGA
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