mRNA_19033 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	jgi.p\|Trimin1\|354744
Unique Name	mRNA_19033
Type	mRNA
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )

Homology

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BLAST of jgi.p|Trimin1|354744 vs. uniprot
Match: A0A835YQB6_9STRA (RK17, ribosomal protein 17 50S large ribosomal subunit, chloroplast n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQB6_9STRA)

HSP 1 Score: 262 bits (669), Expect = 2.340e-85
Identity = 128/128 (100.00%), Postives = 128/128 (100.00%), Query Frame = 3

Query:  180 MMRHMKRVAKLGLPADQRKALLRSLTTEVIRHGRIKTTLVRARAVRKYVDHMIQLGKDGSLHARRQAMGYMYDKALVHALFEQAPERYGERNGGYCRVLKTMPRQGTTPRWPSLSWSKKRNQHAHLQG 563
            MMRHMKRVAKLGLPADQRKALLRSLTTEVIRHGRIKTTLVRARAVRKYVDHMIQLGKDGSLHARRQAMGYMYDKALVHALFEQAPERYGERNGGYCRVLKTMPRQGTTPRWPSLSWSKKRNQHAHLQG
Sbjct:    1 MMRHMKRVAKLGLPADQRKALLRSLTTEVIRHGRIKTTLVRARAVRKYVDHMIQLGKDGSLHARRQAMGYMYDKALVHALFEQAPERYGERNGGYCRVLKTMPRQGTTPRWPSLSWSKKRNQHAHLQG 128

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BLAST of jgi.p|Trimin1|354744 vs. uniprot
Match: A0A836CL42_9STRA (Ribosomal protein L17 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CL42_9STRA)

HSP 1 Score: 229 bits (584), Expect = 6.010e-72
Identity = 116/127 (91.34%), Postives = 119/127 (93.70%), Query Frame = 3

Query:  117 SSFAGNGVASRPVVHNESGLQMMRHMKRVAKLGLPADQRKALLRSLTTEVIRHGRIKTTLVRARAVRKYVDHMIQLGKDGSLHARRQAMGYMYDKALVHALFEQAPERYGERNGGYCRVLKTMPRQG 497
            SSF G  VASR VV  E GLQMMRHMKRVAKLG PADQRKALLRSLTTEVIRHGRIKTTLVRARAVRK+VDHMIQLGKDGSLH+RRQAMG+MYDKALVHALFEQAPERYGERNGGYCRVLKTMPRQG
Sbjct:   28 SSFQGAAVASRNVVVAEGGLQMMRHMKRVAKLGKPADQRKALLRSLTTEVIRHGRIKTTLVRARAVRKFVDHMIQLGKDGSLHSRRQAMGFMYDKALVHALFEQAPERYGERNGGYCRVLKTMPRQG 154

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BLAST of jgi.p|Trimin1|354744 vs. uniprot
Match: A0A7S0CE24_9STRA (Hypothetical protein n=2 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CE24_9STRA)

HSP 1 Score: 192 bits (489), Expect = 1.460e-57
Identity = 98/137 (71.53%), Postives = 115/137 (83.94%), Query Frame = 3

Query:   99 GSLRSPSSFAGNGVASRPVV----HNESGLQMMRHMKRVAKLGLPADQRKALLRSLTTEVIRHGRIKTTLVRARAVRKYVDHMIQLGKDGSLHARRQAMGYMYDKALVHALFEQAPERYGERNGGYCRVLKTMPRQG 497
            GS+ S SSFAGN VA +P       +   L MMRH K++AKLG PADQRKALLR+LTTEVIRHGRIKTTL+RA+AVRK+VDHMI LGKDGSLH+RRQA+ ++YDK LVHALF+ AP+RYG+R GGYCRVL+TMPRQG
Sbjct:   23 GSM-SCSSFAGNTVAVQPSYDTYERSRGDLSMMRHRKKLAKLGKPADQRKALLRALTTEVIRHGRIKTTLIRAKAVRKHVDHMITLGKDGSLHSRRQALAWVYDKNLVHALFDAAPDRYGDREGGYCRVLRTMPRQG 158

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BLAST of jgi.p|Trimin1|354744 vs. uniprot
Match: K0TAZ9_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TAZ9_THAOC)

HSP 1 Score: 191 bits (485), Expect = 4.520e-56
Identity = 98/143 (68.53%), Postives = 112/143 (78.32%), Query Frame = 3

Query:   87 VQHPGSLRSPSSFAGNGV------ASRPVVHNESGLQMMRHMKRVAKLGLPADQRKALLRSLTTEVIRHGRIKTTLVRARAVRKYVDHMIQLGKDGSLHARRQAMGYMYDKALVHALFEQAPERYGERNGGYCRVLKTMPRQG 497
            V  P  + S SSF G  +      A+R      S L+MMRH KRV KLG PADQRKALLR+LTTE+IRHGRIKTT VRA+AVRK+VDHM++LGK G LHARRQA+G++YDK LVHALFE APERYGERNGGY RVL+TMPRQG
Sbjct:   81 VTSPKGVGSVSSFTGTHISTVMEPAARAHHSKSSSLEMMRHRKRVPKLGKPADQRKALLRALTTEIIRHGRIKTTAVRAKAVRKHVDHMVELGKRGDLHARRQALGWIYDKDLVHALFEAAPERYGERNGGYTRVLRTMPRQG 223

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BLAST of jgi.p|Trimin1|354744 vs. uniprot
Match: A0A7S4HPH3_9STRA (Hypothetical protein n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4HPH3_9STRA)

HSP 1 Score: 188 bits (478), Expect = 6.190e-56
Identity = 96/134 (71.64%), Postives = 110/134 (82.09%), Query Frame = 3

Query:  102 SLRSPSSFAGNGVASRPVVHNES--GLQMMRHMKRVAKLGLPADQRKALLRSLTTEVIRHGRIKTTLVRARAVRKYVDHMIQLGKDGSLHARRQAMGYMYDKALVHALFEQAPERYGERNGGYCRVLKTMPRQG 497
            +  + SSFAG  V+    V  E+   + MMRH K+VAKLG PADQRKALLR+LTTEVIRHGRIKTTLVRA+AVRK+VDHMIQLGK G LHARRQA+G+MYDK LVH+LFE APERY +R GGY RVL+TMPRQG
Sbjct:   23 AFSAKSSFAGAAVSESTCVARETRGDMSMMRHRKKVAKLGKPADQRKALLRALTTEVIRHGRIKTTLVRAKAVRKHVDHMIQLGKRGDLHARRQALGWMYDKDLVHSLFEAAPERYSDREGGYTRVLRTMPRQG 156

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BLAST of jgi.p|Trimin1|354744 vs. uniprot
Match: A0A7S3V465_9STRA (Hypothetical protein (Fragment) n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3V465_9STRA)

HSP 1 Score: 186 bits (473), Expect = 2.380e-55
Identity = 98/143 (68.53%), Postives = 110/143 (76.92%), Query Frame = 3

Query:   66 VLLQCCCVQHPGSLRSPSSFAGNGVASRPVVHNESGLQMMRHMKRVAKLGLPADQRKALLRSLTTEVIRHGRIKTTLVRARAVRKYVDHMIQLGKDGSLHARRQAMGYMYDKALVHALFEQAPERYGERNGGYCRVLKTMPRQ 494
            V+L   C+    S    SSF G+ +       N S L MMRH K+VAKLG PADQRKALLR+LTTEVIRHGRIKTTL RA+AVRK+VDHMIQLGK G LHARRQAMG++YDK LVH+LFE APERY ER GGY RVL+TMPRQ
Sbjct:   16 VILLLACLIAAVSAFGTSSFTGSTITG---ASNGSSLSMMRHRKKVAKLGKPADQRKALLRALTTEVIRHGRIKTTLTRAKAVRKHVDHMIQLGKRGDLHARRQAMGWIYDKDLVHSLFEAAPERYSEREGGYTRVLRTMPRQ 155

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BLAST of jgi.p|Trimin1|354744 vs. uniprot
Match: A0A7S1C082_9STRA (Hypothetical protein n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1C082_9STRA)

HSP 1 Score: 187 bits (474), Expect = 2.390e-55
Identity = 94/132 (71.21%), Postives = 108/132 (81.82%), Query Frame = 3

Query:  117 SSFAGNGVASRP-----VVHNESGLQMMRHMKRVAKLGLPADQRKALLRSLTTEVIRHGRIKTTLVRARAVRKYVDHMIQLGKDGSLHARRQAMGYMYDKALVHALFEQAPERYGERNGGYCRVLKTMPRQG 497
            SSF G  V S+      +    + L MMRH K++A+ G PADQRKAL+R+LTTE+IRHGRIKTTLVRARAVRK+VDHMIQLGKDGSLH+RRQAM +MYDK LVHALFE APERY +RNGGY RVL+TMPRQG
Sbjct:   24 SSFTGASVVSQDTAFYRLASRGTDLSMMRHRKKIARCGRPADQRKALMRALTTEIIRHGRIKTTLVRARAVRKHVDHMIQLGKDGSLHSRRQAMAWMYDKQLVHALFEAAPERYEDRNGGYTRVLRTMPRQG 155

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BLAST of jgi.p|Trimin1|354744 vs. uniprot
Match: Q5K251_GUITH (50S ribosomal protein L17 n=2 Tax=Guillardia theta TaxID=55529 RepID=Q5K251_GUITH)

HSP 1 Score: 182 bits (461), Expect = 1.560e-53
Identity = 96/128 (75.00%), Postives = 104/128 (81.25%), Query Frame = 3

Query:  114 PSSFAGNGVASRPVVHNESGLQMMRHMKRVAKLGLPADQRKALLRSLTTEVIRHGRIKTTLVRARAVRKYVDHMIQLGKDGSLHARRQAMGYMYDKALVHALFEQAPERYGERNGGYCRVLKTMPRQG 497
            P S + NG +S       S L+MMRH KRVAKLGLP DQRKALLRSLTTEVIRHGRI TTL RA+AVR  VD MI L KDGSL ARRQAMG+MYDK LVHALFEQAPERY ERNGGYCRVL+T+PR+G
Sbjct:   23 PVSSSRNGASSAL-----SSLEMMRHGKRVAKLGLPQDQRKALLRSLTTEVIRHGRITTTLARAKAVRSEVDKMITLAKDGSLSARRQAMGWMYDKQLVHALFEQAPERYSERNGGYCRVLQTLPRKG 145

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BLAST of jgi.p|Trimin1|354744 vs. uniprot
Match: A0A7S2HZN5_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2HZN5_9STRA)

HSP 1 Score: 182 bits (462), Expect = 1.570e-53
Identity = 93/136 (68.38%), Postives = 109/136 (80.15%), Query Frame = 3

Query:  111 SPSSFAGNGVAS-------RPVVHNESGLQMMRHMKRVAKLGLPADQRKALLRSLTTEVIRHGRIKTTLVRARAVRKYVDHMIQLGKDGSLHARRQAMGYMYDKALVHALFEQAPERYGERNGGYCRVLKTMPRQG 497
            S S+F G  VA+       R V +  + L MMRH K++ KL  PADQRKALLR+LTTEVIRHGRIKTTLVRA+AVRK+VDHMI+LGK G LHARRQA+G++YDK LVH+LFE APERY +RNGGY RVL+TMPRQG
Sbjct:   21 SSSTFIGTSVATLESTYAARGVSNGRADLSMMRHRKKLKKLNKPADQRKALLRALTTEVIRHGRIKTTLVRAKAVRKHVDHMIELGKRGDLHARRQALGWVYDKDLVHSLFEAAPERYSDRNGGYTRVLRTMPRQG 156

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BLAST of jgi.p|Trimin1|354744 vs. uniprot
Match: A0A7S1DX23_9STRA (Hypothetical protein n=2 Tax=Thalassionema nitzschioides TaxID=33649 RepID=A0A7S1DX23_9STRA)

HSP 1 Score: 181 bits (458), Expect = 9.460e-53
Identity = 92/133 (69.17%), Postives = 106/133 (79.70%), Query Frame = 3

Query:  117 SSFAGNGVAS------RPVVHNESGLQMMRHMKRVAKLGLPADQRKALLRSLTTEVIRHGRIKTTLVRARAVRKYVDHMIQLGKDGSLHARRQAMGYMYDKALVHALFEQAPERYGERNGGYCRVLKTMPRQG 497
            S+F G G+A+        +   +S L MMRH K   KLG PADQRKALLR+LTTE+IRHGRIKTTLVRARAVRK+VDHMI LGK G LHARRQAM ++YDK LVHALF+ APERYG+RNGGY RVL+T+PRQG
Sbjct:   37 SAFTGYGMATLQQAPPTTISRTKSNLDMMRHRKGFKKLGKPADQRKALLRALTTEIIRHGRIKTTLVRARAVRKHVDHMITLGKRGDLHARRQAMSWVYDKNLVHALFDAAPERYGDRNGGYTRVLRTVPRQG 169

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BLAST of jgi.p|Trimin1|354744 vs. uniprot
Match: A0A835Z3T7_9STRA (XAP5, circadian clock regulator-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3T7_9STRA)

HSP 1 Score: 645 bits (1663), Expect = 4.440e-231
Identity = 362/362 (100.00%), Postives = 362/362 (100.00%), Query Frame = 3

Query:  195 MSSEFHSGFKRDTTGIHTVEGSLAGNRAAKLTKKREAQQAEYEAKKKKIQDEYKRGGLRIEQKFGGSATDQFEAMFKSKTVGLVTADEFRKAREEAEKVLPSAECSESVGTEGSAXXXXXXXXXXXXXXXXXXXXXXXXXTLSFGGDXXXGEEGGEGPEESSVGKGAAKKVFKNPHVDTSFLPDREREAQMAREKSRLRQEWMQQQDKIKQELLEVTYSYWDGTGHRRTIKITKGTTVGKFLEAVRQQLSTDFSELRATSSDNLLYVKEDLIIPHSYSFYDLIVTKARGKSGPLFHFDVFDDVRLIHDATVEKDESHPGKVVERRWYERSKHIFPASRWEVYDPSKDYGDYTTHGREVNEKN 1280
            MSSEFHSGFKRDTTGIHTVEGSLAGNRAAKLTKKREAQQAEYEAKKKKIQDEYKRGGLRIEQKFGGSATDQFEAMFKSKTVGLVTADEFRKAREEAEKVLPSAECSESVGTEGSAXXXXXXXXXXXXXXXXXXXXXXXXXTLSFGGDXXXGEEGGEGPEESSVGKGAAKKVFKNPHVDTSFLPDREREAQMAREKSRLRQEWMQQQDKIKQELLEVTYSYWDGTGHRRTIKITKGTTVGKFLEAVRQQLSTDFSELRATSSDNLLYVKEDLIIPHSYSFYDLIVTKARGKSGPLFHFDVFDDVRLIHDATVEKDESHPGKVVERRWYERSKHIFPASRWEVYDPSKDYGDYTTHGREVNEKN
Sbjct:    1 MSSEFHSGFKRDTTGIHTVEGSLAGNRAAKLTKKREAQQAEYEAKKKKIQDEYKRGGLRIEQKFGGSATDQFEAMFKSKTVGLVTADEFRKAREEAEKVLPSAECSESVGTEGSAXXXXXXXXXXXXXXXXXXXXXXXXXTLSFGGDXXXGEEGGEGPEESSVGKGAAKKVFKNPHVDTSFLPDREREAQMAREKSRLRQEWMQQQDKIKQELLEVTYSYWDGTGHRRTIKITKGTTVGKFLEAVRQQLSTDFSELRATSSDNLLYVKEDLIIPHSYSFYDLIVTKARGKSGPLFHFDVFDDVRLIHDATVEKDESHPGKVVERRWYERSKHIFPASRWEVYDPSKDYGDYTTHGREVNEKN 362

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BLAST of jgi.p|Trimin1|354744 vs. uniprot
Match: D8LMC0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMC0_ECTSI)

HSP 1 Score: 409 bits (1051), Expect = 3.230e-138
Identity = 238/356 (66.85%), Postives = 279/356 (78.37%), Query Frame = 3

Query:  219 FKRDTTGIHTVEGSLAGNRAAKLTKKREAQQAEYEAKKKKIQDEYKRGGLRIEQKFGGSATDQFEAMFKSKTVGLVTADEFRKAREEAEKVLPSAECSESVGTEGSAXXXXXXXXXXXXXXXXXXXXXXXXXTLSFGGDXXX---GEEGGEGPEESSVGKGAAKKVFKNPHVDTSFLPDREREAQMAREKSRLRQEWMQQQDKIKQELLEVTYSYWDGTGHRRTIKITKGTTVGKFLEAVRQQLSTDFSELRATSSDNLLYVKEDLIIPHSYSFYDLIVTKARGKSGPLFHFDVFDDVRLIHDATVEKDESHPGKVVERRWYERSKHIFPASRWEVYDPSKDYGDYTTHGREVNEK 1277
            FKR  TGI+T EG ++G RAA+L K+R   Q +YE+K++KIQDEY RG L+I+ KFGGSATDQ+EAMFK+ TVGLVTADEF+KAR  AE  +   E           XXXXXXXXXXXXXXXXXXXXXXXX TLSFG +      GE GG+      +GK       KNP+VDTSFLPDRERE  M  ++ +L++EW+++Q+K+K E LEVTYSYWDG+GHRR I + KG TVGKFLE VRQQLS DFSE+R+ SS+NLLY+KEDLIIPH +SFYDLIVTKARGKSGPLFHFDV DD+RL+HD  +EKDESHPGK+VERRWYER+KHIFPASRWE YDP KDYG YT HG EVNEK
Sbjct:    5 FKRGDTGINTAEGQISGPRAARLAKQRLEDQKDYESKRQKIQDEYHRGALKIDDKFGGSATDQYEAMFKATTVGLVTADEFKKARVLAETGVGDKEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTLSFGEEIEEDDQGEGGGDAEPPLKLGK-------KNPNVDTSFLPDREREKGMRDQREKLKKEWIEEQEKLKMERLEVTYSYWDGSGHRREIVLNKGITVGKFLEMVRQQLSQDFSEMRSVSSENLLYIKEDLIIPHHFSFYDLIVTKARGKSGPLFHFDVHDDIRLVHDTRIEKDESHPGKIVERRWYERNKHIFPASRWETYDPQKDYGTYTIHGGEVNEK 353

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BLAST of jgi.p|Trimin1|354744 vs. uniprot
Match: A0A7S3HT52_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HT52_9STRA)

HSP 1 Score: 355 bits (912), Expect = 2.580e-117
Identity = 191/351 (54.42%), Postives = 254/351 (72.36%), Query Frame = 3

Query:  234 TGIHTVEGSLAGNRAAKLTKKREAQQAEYEAKKKKIQDEYKRGGLRIEQKFGGSATDQFEAMFKSKTVGLVTADEFRKAREEAEKVLPSAECSESVGTEGSAXXXXXXXXXXXXXXXXXXXXXXXXXTLSFGGDXXXGEEGGEGPEESSVGKGAAKKVFKNPHVDTSFLPDREREAQMAREKSRLRQEWMQQQDKIKQELLEVTYSYWDGTGHRRTIKITKGTTVGKFLEAVRQQLSTDFSELRATSSDNLLYVKEDLIIPHSYSFYDLIVTKARGKSGPLFHFDVFDDVRLIHDATVEKDESHPGKVVERRWYERSKHIFPASRWEVYDP--SKDYGDYTTHGREVNEKN 1280
            +GIHTVEG++AGNRAA LTK+R+AQ+AEYEA K KI+++   G  +I+ KF  SA+D  E  F+ KTVGLV+A +FRKAREE  ++    +  E+   +                            +LSF  +   G+E  EG E + V K   KK  K+P VDTS+LPDR+R+A++  +K++L++EW+ +QD+IK E+L+V YSYWDG+GHR+TI++ KGTT+G+FLE V+ QL  +F E+R+T+ D+ +YVKEDLIIPH YSFYDLIVTKARGKSGPLFHFDV DDVR+++DATVEKDESHPGK+ ERRWYER+KHIFPASRWEVYDP  +++   YT HG EV +K+
Sbjct:    9 SGIHTVEGTVAGNRAAVLTKQRDAQRAEYEAVKNKIKEDNAAGVGKIDDKFS-SASDVLEQEFRRKTVGLVSATDFRKAREETIEIKVDTKAQEAKELKAQQNKEKTRELKRKKIAS----------SLSF--EVNDGDEQDEGEEVAFVSKN--KKRLKDPTVDTSYLPDRDRDAEINAKKAQLQKEWLAEQDRIKNEMLQVVYSYWDGSGHRKTIEVRKGTTIGRFLELVKAQLIGEFHEVRSTNPDDFVYVKEDLIIPHHYSFYDLIVTKARGKSGPLFHFDVHDDVRMVNDATVEKDESHPGKIAERRWYERNKHIFPASRWEVYDPRVNREQQGYTIHGGEVTKKD 344

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BLAST of jgi.p|Trimin1|354744 vs. uniprot
Match: A0A7S2M861_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2M861_9STRA)

HSP 1 Score: 347 bits (889), Expect = 1.830e-113
Identity = 212/368 (57.61%), Postives = 263/368 (71.47%), Query Frame = 3

Query:  204 EFHSGFKRDTTGIHTVEGSLAGNRAAKLTKKREAQQAEYEAKKKKIQDEYKRGGLRIEQKFGGSATDQFEAM-FKSKTVGLVTADEFRKAREEAEKVLPSAECSESVG-TEGSAXXXXXXXXXXXXXXXXXXXXXXXXX-------TLSFGGDXXXGEEGGEGPEESSVGKGAAKKVFKNPHVDTSFLPDREREAQMAREKSRLRQEWMQQQDKIKQELLEVTYSYWDGTGHRRTIKITKGTTVGKFLEAVRQQLSTDFSELRATSSDNLLYVKEDLIIPHSYSFYDLIVTKARGKSGPLFHFDVFDDVRL-IHDATVEKDESHPGKVVERRWYERSKHIFPASRWEVYDPSKDYGDYTTHGREVNEK 1277
            +F + F R  TGI+TVEG++AG+RAA L+KKR A+QA++EA+K+KI+ + +RG L I+ KF  +     E   F++KTVGLVTA+EFRKA  EAEK        E  G  +G A        XXXXXXXXXXXXXXXXX       TLSFG D    +   +  + SS  K   K + KNP VDTSFLPD+ERE     EK RLR++W+ +Q  +K+E+LE+TYSYWDGTGHRRT++  KG TV +FLE VR  L+ DF E++  SSD L+YVKEDLI+P   SFYDLI T+ARGKSGPLF+FDV DDVR+   D  VEKDESHPGKVVERRWY+R+KHIFPASRWE+YDP+K+YG YT HG EVN+K
Sbjct:    3 DFQANFIRPDTGINTVEGNVAGSRAATLSKKRAAEQADFEARKQKIKADSERGKLGIDSKFDTNTNVSAEEQRFRAKTVGLVTAEEFRKASAEAEKARGKRIGEEDEGDNDGEAAPKLSEEEXXXXXXXXXXXXXXXXXXXXXXMATLSFGADEELDDNDADANDLSSGTK--TKTINKNPEVDTSFLPDQEREEHAKAEKERLRKKWLDRQAAMKEEILEITYSYWDGTGHRRTVQCKKGDTVAQFLETVRSSLAKDFREMQNVSSDALIYVKEDLILPQDVSFYDLIATRARGKSGPLFNFDVHDDVRVGAVDTRVEKDESHPGKVVERRWYDRNKHIFPASRWEIYDPAKEYGRYTIHGGEVNKK 368

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BLAST of jgi.p|Trimin1|354744 vs. uniprot
Match: A0A7S2UBR5_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UBR5_9STRA)

HSP 1 Score: 337 bits (864), Expect = 8.900e-110
Identity = 198/363 (54.55%), Postives = 267/363 (73.55%), Query Frame = 3

Query:  204 EFHSGFKRDTTGIHTVEGSLAGNRAAKLTKKREAQQAEYEAKKKKIQDEYKRGGLRIEQKFGG-SATDQFEAMFKSKTVGLVTADEFRKAREEAEK----VLPSAECSESVGTEGSAXXXXXXXXXXXXXXXXXXXXXXXXXTLSFGGDXXXGEEGGEGPEESSVGKGAAKKVFKNPHVDTSFLPDREREAQMAREKSRLRQEWMQQQDKIKQELLEVTYSYWDGTGHRRTIKITKGTTVGKFLEAVRQQLSTDFSELRATSSDNLLYVKEDLIIPHSYSFYDLIVTKARGKSGPLFHFDVFDDVRL-IHDATVEKDESHPGKVVERRWYERSKHIFPASRWEVYDPSKD-YGDYTTHGREVN 1271
            +F + FKR  +GIHTVEG++AG RAA LTK+REAQQ E+E +K+K+  + +RG   I+ KF G S+  + E  F+S+TVGLVTADEFRKA E+A K        +  +E++  E +      XXXXXXXXXXXXXXXX    TLSF G     ++    P+ + V +  AK++ K+P VDTSFLPD+ER+  +  ++  L+Q+W+ +Q++IK+E LE+ YSYWDG+GHRRT+++ KG ++G FLE VR++L+ +F +++  S+++LLYVKEDL+IP   +FYDLI TKARGKSGPLFHFDV DDVR+   D  VEKDESHPGK+V+RRWY+R+KHIFPASRWE +DP+KD YG YT HG EVN
Sbjct:    3 DFSANFKRPDSGIHTVEGNVAGARAATLTKQREAQQLEFEERKRKLAQDAERGSKTIQDKFSGDSSLTKAEQSFRSRTVGLVTADEFRKATEDAAKRGXXXXXXSVLTETI--ESAKELESRXXXXXXXXXXXXXXXXKILSTLSFAG----ADDADFLPDVTEVTEKVAKRLKKDPGVDTSFLPDQERQEALEHQRDLLKQQWLDEQERIKKETLEIVYSYWDGSGHRRTVQVKKGDSIGHFLECVRRELAKEFRDVQNVSAEDLLYVKEDLMIPQDITFYDLIQTKARGKSGPLFHFDVHDDVRVGAIDTRVEKDESHPGKIVQRRWYDRNKHIFPASRWETFDPAKDSYGHYTIHGGEVN 359

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BLAST of jgi.p|Trimin1|354744 vs. uniprot
Match: B8C484_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C484_THAPS)

HSP 1 Score: 334 bits (856), Expect = 2.490e-108
Identity = 195/377 (51.72%), Postives = 247/377 (65.52%), Query Frame = 3

Query:  204 EFHSGFKRDTTGIHTVEGSLAGNRAAKLTKKREAQQAEYEAKKKKIQDEYKRGGLRIEQKFGGSAT-DQFEAMFKSKTVGLVTADEFRKAREEAEKVLPS-AECSESVGTEG--------SAXXXXXXXXXXXXXXXXXXXXXXXXXTLSFGGDXXXGEEGGEGPEESSVGKGAAKK--------VFKNPHVDTSFLPDREREAQMAREKSRLRQEWMQQQDKIKQELLEVTYSYWDGTGHRRTIKITKGTTVGKFLEAVRQQLSTDFSELRATSSDNLLYVKEDLIIPHSYSFYDLIVTKARGKSGPLFHFDVFDDVRL-IHDATVEKDESHPGKVVERRWYERSKHIFPASRWEVYDPSKDYGDYTTHGREVNEK 1277
            +F + F+R  TGI+TVEG++AG+RAA L+KKR A+QA +EA+K+KI+ + +RG L I+ KF  +    + E  F+ +TVGLV+A EF++A  E EK      E     G EG                      XXX           LSF GD    ++   G +E S GK +  K        + KNP VDTSFLPD+ RE +   E++RLR+EW+ +Q  +K+E+LE+TYSYWDGTGHRRT+   KG TV +FLE VR+ L+ +F E+   SSD LLYVKEDLIIP   SFYDLI T+ARGKSGPLF+FDV DDVRL   DA VEKDESHPGKVVERRWY+R+KHIFPASRWE YDP+K+YG YT HG EV +K
Sbjct:    3 DFQANFQRPDTGINTVEGNVAGSRAATLSKKRAAEQASFEARKQKIKADSERGKLGIDAKFDTNTNVSKEEQKFREQTVGLVSAAEFKRANAEIEKARSKRGEDEFDDGVEGVDGGTSITEEELKRLEKDRKKAXXXALKEKKKRMAALSFAGDEELEDDETNGADEPSDGKESNDKQSTKEDKGIMKNPSVDTSFLPDQGREQRAKEERNRLRREWLDRQKTMKEEVLEITYSYWDGTGHRRTVHCKKGDTVAQFLELVRKDLAKEFREMCNVSSDALLYVKEDLIIPQDISFYDLIATRARGKSGPLFNFDVHDDVRLGALDARVEKDESHPGKVVERRWYDRNKHIFPASRWEPYDPAKEYGTYTIHGGEVTKK 379

[Close]

BLAST of jgi.p|Trimin1|354744 vs. uniprot
Match: A0A484DRV9_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484DRV9_BRELC)

HSP 1 Score: 316 bits (809), Expect = 5.920e-102
Identity = 179/344 (52.03%), Postives = 229/344 (66.57%), Query Frame = 3

Query:  231 TTGIHTVEGSLAGNRAAKLTKKREAQQAEYEAKKKKIQDEYKRGGLRIEQKFGGSATDQFEAMFKSKTVGLVTADEFRKAREEAEKVLPSAECSESVGTEGSAXXXXXXXXXXXXXXXXXXXXXXXXXTLSFGGDXXXGEEGGEGPEESSVGKGAAKK-VFKNPHVDTSFLPDREREAQMAREKSRLRQEWMQQQDKIKQELLEVTYSYWDGTGHRRTIKITKGTTVGKFLEAVRQQLSTDFSELRATSSDNLLYVKEDLIIPHSYSFYDLIVTKARGKSGPLFHFDVFDDVRLIHDATVEKDESHPGKVVERRWYERSKHIFPASRWEVYDPSKDYGDYTTHG 1259
            ++G HTVEG+ AG+RAA+LTK+RE QQ EYEAK++ I+   +RG +RI+  F     D  E+ FK +TVGLVTA EFRK RE+ +    S+  +E +  + +                           LSF       + G +  E+        KK + KNP+V+T  LPD+ER+ +  RE+ RLR EW   Q++IK E + VTYSYWDG+GHRR I + K TTVGK+LE V+QQL ++F+ELR  S++NL+Y+KEDLIIPH YSFYDLIVTKARGKSGPLFHFDV DDVRL+ D  VEKDESHPGKVV+R WYE++KHIFPASRWEVYD +     YT HG
Sbjct:    9 SSGAHTVEGNAAGSRAARLTKQREKQQKEYEAKRQDIETTNRRG-MRIDANFQTHQDDD-ESEFKRQTVGLVTAKEFRKKREDLQN-RKSSNVNEFLKEQQNGAKKKIKRKADSIGP------------LSF-------DIGDDNDEQLKATTTTIKKRIMKNPNVETGLLPDKERDKEETRERQRLRAEWEAVQERIKNENVAVTYSYWDGSGHRREITVPKQTTVGKYLELVKQQLVSEFAELRGVSAENLIYIKEDLIIPHHYSFYDLIVTKARGKSGPLFHFDVHDDVRLMQDRRVEKDESHPGKVVDRHWYEKNKHIFPASRWEVYDHNVARDKYTIHG 330

[Close]

BLAST of jgi.p|Trimin1|354744 vs. uniprot
Match: D0NXI0_PHYIT (Uncharacterized protein n=4 Tax=Phytophthora TaxID=4783 RepID=D0NXI0_PHYIT)

HSP 1 Score: 315 bits (807), Expect = 1.400e-101
Identity = 194/348 (55.75%), Postives = 240/348 (68.97%), Query Frame = 3

Query:  231 TTGIHTVEGSLAGNRAAKLTKKREAQQAEYEAKKKKIQDEYKRGGLRIEQKFGGSATDQFEAMFKS-----KTVGLVTADEFRKAREEAEKVLPSAECSESVGTEGSAXXXXXXXXXXXXXXXXXXXXXXXXXTLSFGGDXXXGEEGGEGPEESSVGKGAAKKVFKNPHVDTSFLPDREREAQMAREKSRLRQEWMQQQDKIKQELLEVTYSYWDGTGHRRTIKITKGTTVGKFLEAVRQQLSTDFSELRATSSDNLLYVKEDLIIPHSYSFYDLIVTKARGKSGPLFHFDVFDDVRLIHDATVEKDESHPGKVVERRWYERSKHIFPASRWEVYDPSKDYGDYTTHG 1259
            ++G HTVEG++AG+RA+KL+K+RE QQ EYEAK+  I+   +RG  RI++ F  S  D  E+ FK+     +TVGLVTA+EFRK RE             ++    S+         XXXXXXXXXXXXX    LSF  D    +E      E +     AKK  KNP+V+T FLPD+ERE +      +LR EW  +Q++IK E + VTYSYWDG+GHRR I I K TT+GK+LE V+QQL T+F+ELR  S++NL+Y+KEDLIIPH YSFYDLIVTKARGKSGPLFHFDV DDVRL+ D  VEKDESHPGKVV+R WYE++KHIFPASRWEVYDP+     YT HG
Sbjct:    9 SSGAHTVEGNVAGSRASKLSKQREMQQKEYEAKRLDIEKTNRRG-TRIDENFQ-SHQDDDESEFKACLGDRQTVGLVTAEEFRKKRE-------------NLQNRKSSRVDVQSEEQXXXXXXXXXXXXXKMGPLSFDMDDNDADE------EETTRPTRAKKSIKNPNVETDFLPDKEREKEEXXXXXQLRVEWEVEQERIKNEDVAVTYSYWDGSGHRREITIPKKTTIGKYLELVKQQLMTEFAELRGVSAENLIYIKEDLIIPHHYSFYDLIVTKARGKSGPLFHFDVHDDVRLLQDRRVEKDESHPGKVVDRYWYEKNKHIFPASRWEVYDPNVVREKYTIHG 335

[Close]

BLAST of jgi.p|Trimin1|354744 vs. uniprot
Match: A0A6U3VLY5_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3VLY5_9STRA)

HSP 1 Score: 312 bits (800), Expect = 1.060e-99
Identity = 205/395 (51.90%), Postives = 259/395 (65.57%), Query Frame = 3

Query:  204 EFHSGFKRDTTGIHTVEGSLAGNRAAKLTKKREAQQAEYEAKKKKIQDEYKRGGLRIEQKFG-GSATDQFEAMFKSKTVGLVTADEFRKAREEAEKVLPSAECSESVGTEGSAXXXXXXXXXXXXXXXXXXXXXXXXXTL-----------------------------SFGGDXXXGEEGGEGPEESSVGKGAA------KKVFKNPHVDTSFLPDREREAQMAREKSRLRQEWMQQQDKIKQELLEVTYSYWDGTGHRRTIKITKGTTVGKFLEAVRQQLSTDFSELRATSSDNLLYVKEDLIIPHSYSFYDLIVTKARGKSGPLFHFDVFDDVRL-IHDATVEKDESHPGKVVERRWYERSKHIFPASRWEVYDPSKDYGDYTTHGREVNEK 1277
            +F + F R  +GIHT+EG++AG+RAA LTKKRE     +E KK++I+ E +RG  R++ KF    +    E  F+  TVGLV+A+EFRKA  EAE++       E VG       XXXXXXXXXXXXXXXXXXXXXXX                                F       +    G  ++S G+G A      K++ K+P VDTSFLPD++RE  + +++ +LR+EW  +Q ++K E+LE+TYSYWDG+GHRRT    KG T+G FLE VR+ L+ +F E+   SSD LLYVKEDLIIP   +FYDLIVT+ARGKSGPLFHFDV DDVR+   D  VEKDESHPGKVVERRWY+R+KHIFPASRWEV+DP+KDYG YT HG EV +K
Sbjct:    3 DFVANFHRPESGIHTIEGNVAGSRAAALTKKREKDARAFEEKKQQIKHESERGRKRMDDKFNVDKSLSAAEQKFRRDTVGLVSAEEFRKATREAERLRRR----ERVGLGDDILEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGXXXXDFVNTTDENDTAESGSAKNSEGEGTASTTDGAKEIKKDPRVDTSFLPDKDREISIQQQREQLRREWHAKQSQVKNEMLEITYSYWDGSGHRRTSVCRKGDTIGNFLELVRKDLAKEFREMTNVSSDALLYVKEDLIIPQDITFYDLIVTRARGKSGPLFHFDVRDDVRMGALDVRVEKDESHPGKVVERRWYDRNKHIFPASRWEVFDPAKDYGTYTIHGGEVTKK 393

[Close]

BLAST of jgi.p|Trimin1|354744 vs. uniprot
Match: F0W1H8_9STRA (Uncharacterized protein AlNc14C7G946 n=2 Tax=Albugo TaxID=65356 RepID=F0W1H8_9STRA)

HSP 1 Score: 310 bits (793), Expect = 1.800e-99
Identity = 180/343 (52.48%), Postives = 233/343 (67.93%), Query Frame = 3

Query:  237 GIHTVEGSLAGNRAAKLTKKREAQQAEYEAKKKKIQDEYKRGGLRIEQKFGGSATDQFEAMFKSKTVGLVTADEFRKAREEAEKVLPS--AECSESVGTEGSAXXXXXXXXXXXXXXXXXXXXXXXXXTLSFGGDXXXGEEGGEGPEESSVGKGAAKKVF-KNPHVDTSFLPDREREAQMAREKSRLRQEWMQQQDKIKQELLEVTYSYWDGTGHRRTIKITKGTTVGKFLEAVRQQLSTDFSELRATSSDNLLYVKEDLIIPHSYSFYDLIVTKARGKSGPLFHFDVFDDVRLIHDATVEKDESHPGKVVERRWYERSKHIFPASRWEVYDPSKDYGDYTTH 1256
            G+HTVEG+LAG+RAA+LTK+RE Q+ +YE+KK++I D   R   RIE+ F  +  D  +A FK +TVGLVTA+EFR+ RE    +L S  ++   SVG   +                           LSF  +    +   +     ++G+G  K++  KNP V+TSFLPD+ERE Q   E+ +L++EW + Q++IK E + VTYSYW+G+GHRR I I K TT+ K+LE V+Q+L  +FSELR  S +NLLYVKEDLIIPH +SFYDLIVTKARGKSGPLFHFDV +DVRLI+DA +EKDESHPGKVVER WYE++KHIFPASRWE+YDP      YT H
Sbjct:   12 GVHTVEGNLAGSRAARLTKQREEQRKDYESKKQEITDTNFRAS-RIEKSFE-THHDLEDAEFKRQTVGLVTAEEFRRKRE----ILQSRRSDVLASVGQSSTKPVEKKNARKRKPKASTL---------LSFSLEE---DTDADVLPTDALGEGRKKRMMRKNPFVETSFLPDKERELQEELERKKLQEEWEEDQNRIKNENVTVTYSYWNGSGHRREITIPKKTTIAKYLELVKQELVQEFSELRGISPENLLYVKEDLIIPHHFSFYDLIVTKARGKSGPLFHFDVHEDVRLINDARIEKDESHPGKVVERHWYEKNKHIFPASRWEMYDPMIKREKYTIH 336

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|354744 vs. uniprot
BLAST of jgi.p|Trimin1|354744 vs. uniprot

BLAST of jgi.p|Trimin1|354744 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A835YQB6_9STRA	2.340e-85	100.00	RK17, ribosomal protein 17 50S large ribosomal sub...	[more]
A0A836CL42_9STRA	6.010e-72	91.34	Ribosomal protein L17 n=1 Tax=Tribonema minus TaxI...	[more]
A0A7S0CE24_9STRA	1.460e-57	71.53	Hypothetical protein n=2 Tax=Proboscia inermis Tax...	[more]
K0TAZ9_THAOC	4.520e-56	68.53	Uncharacterized protein n=1 Tax=Thalassiosira ocea...	[more]
A0A7S4HPH3_9STRA	6.190e-56	71.64	Hypothetical protein n=2 Tax=Odontella aurita TaxI...	[more]
A0A7S3V465_9STRA	2.380e-55	68.53	Hypothetical protein (Fragment) n=1 Tax=Chaetocero...	[more]
A0A7S1C082_9STRA	2.390e-55	71.21	Hypothetical protein n=2 Tax=Corethron hystrix Tax...	[more]
Q5K251_GUITH	1.560e-53	75.00	50S ribosomal protein L17 n=2 Tax=Guillardia theta...	[more]
A0A7S2HZN5_9STRA	1.570e-53	68.38	Hypothetical protein n=1 Tax=Helicotheca tamesis T...	[more]
A0A7S1DX23_9STRA	9.460e-53	69.17	Hypothetical protein n=2 Tax=Thalassionema nitzsch...	[more]

Pages

BLAST of jgi.p|Trimin1|354744 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A835Z3T7_9STRA	4.440e-231	100.00	XAP5, circadian clock regulator-domain-containing ...	[more]
D8LMC0_ECTSI	3.230e-138	66.85	Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2...	[more]
A0A7S3HT52_9STRA	2.580e-117	54.42	Hypothetical protein n=1 Tax=Spumella elongata Tax...	[more]
A0A7S2M861_9STRA	1.830e-113	57.61	Hypothetical protein n=1 Tax=Skeletonema marinoi T...	[more]
A0A7S2UBR5_9STRA	8.900e-110	54.55	Hypothetical protein n=1 Tax=Attheya septentrional...	[more]
B8C484_THAPS	2.490e-108	51.72	Uncharacterized protein n=1 Tax=Thalassiosira pseu...	[more]
A0A484DRV9_BRELC	5.920e-102	52.03	Uncharacterized protein n=1 Tax=Bremia lactucae Ta...	[more]
D0NXI0_PHYIT	1.400e-101	55.75	Uncharacterized protein n=4 Tax=Phytophthora TaxID...	[more]
A0A6U3VLY5_9STRA	1.060e-99	51.90	Hypothetical protein n=1 Tax=Ditylum brightwellii ...	[more]
F0W1H8_9STRA	1.800e-99	52.48	Uncharacterized protein AlNc14C7G946 n=2 Tax=Albug...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_542	contig	Contig_542:4356..7431 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Properties


Property Name	Value
ProteomeId	Trimin1\|354744\|estExt_Genemark1.C_Ctg_5420002
BRITE	br01610,ko00000,ko00001,ko00002,ko03011
KEGG Module	M00178
KEGG Pathway	ko03010,map03010
KEGG ko	ko:K02879
Description	Belongs to the bacterial ribosomal protein bL17 family
COG category	J
Max annot lvl	2836\|Bacillariophyta
EggNOG OGs	COG0203@1\|root,KOG3280@2759\|Eukaryota,2XC9N@2836\|Bacillariophyta
Evalue	2.92e-55
Seed ortholog	159749.K0TAZ9
Hectar predicted targeting category	mitochondrion
TranscriptId	355066
Track	FilteredModels1
ProteinId	354744

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|354744	gene_19033	Tribonema minus UTEX_B_3156	gene	Contig_542 4356..7431 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|354744	Trimin1\|354744\|estExt_Genemark1.C_Ctg_5420002	Tribonema minus UTEX_B_3156	polypeptide	Contig_542 4791..7252 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
exon_19033_3	exon_19033_3	Tribonema minus UTEX_B_3156	exon	Contig_542 4356..4912 -
exon_19033_2	exon_19033_2	Tribonema minus UTEX_B_3156	exon	Contig_542 5422..5680 -
exon_19033_1	exon_19033_1	Tribonema minus UTEX_B_3156	exon	Contig_542 7247..7431 -

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
UTR3_19033	UTR3_19033	Tribonema minus UTEX_B_3156	three_prime_UTR	Contig_542 4356..4790 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
CDS_19033	CDS_19033	Tribonema minus UTEX_B_3156	CDS	Contig_542 7247..7252 -

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
UTR5_19033	UTR5_19033	Tribonema minus UTEX_B_3156	five_prime_UTR	Contig_542 7253..7431 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Contig_542:4356..7431-
coding sequence from alignment at Contig_542:4356..7431-

spliced messenger RNA

>mRNA_19033 ID=mRNA_19033|Name=jgi.p|Trimin1|354744|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1001bp|location=Sequence derived from alignment at Contig_542:4356..7431- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CCCGACACTAGACACTTGTGACTGCCAGCGATGAAGCTTCTGTTGGCGAT
AGCTGCTGCGTTGGCGTCCTGCTGCAGTGTTGTTGCGTTCAGCACCCTGG
GAGCTTGCGGTCACCGTCGTCGTTTGCAGGAAATGGCGTCGCTAGCAGAC
CTGTGGTGCACAACGAAAGTGGCCTCCAAATGATGCGCCACATGAAGCGC
GTGGCAAAGCTCGGTCTGCCCGCAGACCAGCGCAAGGCCCTGTTGCGGTC
TCTCACAACGGAGGTCATACGGCACGGCCGCATTAAGACGACGCTCGTGC
GTGCGCGCGCTGTGCGAAAGTATGTTGACCACATGATCCAGCTGGGCAAG
GACGGTTCGCTGCACGCGCGTCGCCAGGCGATGGGCTACATGTACGACAA
GGCGCTCGTGCACGCGCTGTTTGAGCAGGCGCCGGAGCGCTACGGAGAGC
GCAATGGCGGCTACTGCCGGGTGCTCAAGACCATGCCCCGCCAGGGGACA
ACGCCAAGATGGCCATCATTGAGCTGGTCTAAGAAACGGAACCAGCATGC
ACATTTGCAGGGTTAGGGCAAGGCACGCCAGCCCTCAGCCATGGGGTAGC
CAACCCTAGGTCTAGGGCCAGCGGACCCTATGGCTAGGGTCGTCAACCCA
CAGTAAAGGTCAACAACATCAACAGCTTCAGGATCCTGTGCCACTGCCCT
GTATGGAGGCACACGTGGTCACGTTTTCCACTCTCTCTCTCTCTTGTAGA
GAAGACGCGCACGACCCCCACTTTTATGGTGCGCTGCTGCCCGCCTACAC
GGTGTTTCCTACCTGCGCTTCAGATGGTGCAGTGGGCGTTTCTGTGCCCA
CACCCCATCGTAATCAATATGCCACAAGTGCTGCTTTCAGGATGGCCATG
GTCCCTCAGGCGACTCCTGCTTTGGGCTGCATTGTTGCATTCACCAGAAT
GCGTGCTGGCTGATGTAGCTGCCTTGCTTCTGTGTCAACAAATTGGACCA
C

protein sequence of jgi.p|Trimin1|354744

>Trimin1|354744|estExt_Genemark1.C_Ctg_5420002 ID=Trimin1|354744|estExt_Genemark1.C_Ctg_5420002|Name=jgi.p|Trimin1|354744|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=129bp
MMRHMKRVAKLGLPADQRKALLRSLTTEVIRHGRIKTTLVRARAVRKYVD
HMIQLGKDGSLHARRQAMGYMYDKALVHALFEQAPERYGERNGGYCRVLK
TMPRQGTTPRWPSLSWSKKRNQHAHLQG*

mRNA from alignment at Contig_542:4356..7431-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_19033 ID=mRNA_19033|Name=jgi.p|Trimin1|354744|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=3076bp|location=Sequence derived from alignment at Contig_542:4356..7431- (Tribonema minus UTEX_B_3156 )
CCCGACACTAGACACTTGTGACTGCCAGCGATGAAGCTTCTGTTGGCGAT
AGCTGCTGCGTTGGCGTCCTGCTGCAGTGTTGTTGCGTTCAGCACCCTGG
GAGCTTGCGGTCACCGTCGTCGTTTGCAGGAAATGGCGTCGCTAGCAGAC
CTGTGGTGCACAACGAAAGTGGCCTCCAAATGATGGTAAGAGCCTCGCCT
GAGAAGGCCAGCGAAGCACGTAGCACATCTTCAACGTATTGGGTCGATCA
AGTAGCCTAGCTGGTGGCATGCGCATGCCGCGCCAGGCAGTGGTTTTTCA
TGTCAAAGGGAGTGAAAGGGAGGCTGTGCAGCCGCATGATGTTCAACTAT
AACTTTCGTTCTACCGATATGAGCGGCTCTACGGAGCTGTCTGCGGATAC
TTTTCACTCAGTTGCTGACGGCCTGCACTAGCCCTTTCAGCCCTGCCACC
GATCTTGCGGCACACATGAAATCCAGTCAGCTTACAACTTCGTACGTCAG
CGCAGAGGTGTGGCGCGGTACGCAGTGAAGACTAAGGCAGCTGGCTTCAG
TGCCTGAATCGCTTCAGTCGTTTTGTTTTGCATTTTAACTAGATTTTACT
TGTGCACGAAAATACGCGTGTTTTGTGTGAGTGACTGCACTGAGTACATT
AGACCTGAGCGGGCGTCCTGCAAAGGCTCATTGAGTCATCGCGGTGCATT
GGCATATGTGAGGCCACCCACCTTGTGACACCACCTTAAATGCTACCAAT
TCGAATTGGGGGTCATTGATTAAACGTTGATATCCATACATACCAGCCTC
AGGTGCATGTCGAGAGCTGTCGGCCTCGCACTGTACCTGCATTTTCCGCC
ACCCCACAATGCATTGACGGTGCTGCCTGTCTGCACTTCCTTGGAAGCAT
GATTTCTGGCACATTTCGATTTTGGCATGAACATGTTGCAACAGCCATTT
TGCGAGTCTCAAAGTTCCCTGCTTCTGGGGCAGCTGTCTAGATTTGCATC
TCCATAGCCATTTGTTTATGGAGAACTTTGCATGTAGCGCATGCGTTGTG
TGCCTGTACGCTAGCCGTGGATGGGTAATGCCACAATGCTCAACATGTTT
CACCAGCGCTCAGCAACTGCTGAAATAGTCGACACTAGCCTTTGAAGCCA
GCAGCGACACGGGGTGCACGTGCTACCTGGACCGTGAGACCTGCAAATGC
TGCGTGGCTTGACCTACAAACGATCCATGGCTTGGTGTTAGGGTGTGTGT
GGGTAGCATTTGGGTCAAGCAATGCTCAATACATGCATCCGCTGGGCGAT
CTACTTGCACCGCAAGTGCTAGTTCATCTGCCACCAAACTGGAGCGTGCA
AACACACAAGCACATGCCTGTGCTGCCGACGCTCACGACTGCGTTCACTG
TGACGCAATGCGCATGTCATCATTCACGTGCAGAGCTTGGCTCCATCTTA
AGCGGCGTAACCGCTTTTGCTCTCGGTCTTGCAACACGGAGCAGCGGCAT
ATGAAGCGCTCGGCAACGCTCAGGCGGGCCACGCACGTGCATTAGATGCC
CATCCAGCACACCACGCGCCTCATATTGTCTACACTGAACTCTGACATGG
CTCGTTTTGAGGCACTGAACTCCAACCGGCTGCGTCGTCCCCACTGCCTG
TGAGCACTGAACTCTATCTGAGCACTGAACTCTACTGACACTGAACTCTA
TTTGGACACTGAAGTCTATCTGGCGCGTCCCCCCCCACCGCCTCTGAGCA
GCGCCACATGAAGCGCGTGGCAAAGCTCGGTCTGCCCGCAGACCAGCGCA
AGGCCCTGTTGCGGTCTCTCACAACGGAGGTCATACGGCACGGCCGCATT
AAGACGACGCTCGTGCGTGCGCGCGCTGTGCGAAAGTATGTTGACCACAT
GATCCAGCTGGGCAAGGACGGTTCGCTGCACGCGCGTCGCCAGGCGATGG
GCTACATGTACGACAAGGCGCTCGTGCACGCGCTGTTTGAGCAGGCGCCG
GAGCGCTACGGTGAGTCTGAGTTTGAGTTTCGTTGTTTCTGATGAGCTGT
GGGGATACTGGCGCGGCGATATTTCTGGCCCGATGCAGAGGGTTGGTGTG
TTTGATCAAAGCAGACCCAGTTTGCTGTGTAGGCCGGGAGATGGGAACAA
GCCAGCATCGGCGAGGTTTTGTAGATGCACTTGACCGCTGCTCAGTTCCT
CCTGCGTCTTGTTAAGCATGGCGTGCAGGCGTTTTCAACGCTTTTGCTGA
CATGTTGGCTGGGCCCAAACGGTATTCTGATCCTGTGAGCAATCGTTCAC
GCTTTCGCATGTTGGCAGGTTGCATGCACGTATACAGAGTCACCTTGCTA
ACTTCTGCCAGTGACCTTTTCGACTTCTTGTCTGGATGTCTATGTGAAAG
CAGTATTTGCTTCAACTCACTAAGCGGTGCTCACAGACTGCAAGCACATC
AGCGCACAGTCAACAATGGCATTCACTCATGGTGACCGCTTGCTTGCCTG
TGACTGTGTTTGCACGCAGGAGAGCGCAATGGCGGCTACTGCCGGGTGCT
CAAGACCATGCCCCGCCAGGGGACAACGCCAAGATGGCCATCATTGAGCT
GGTCTAAGAAACGGAACCAGCATGCACATTTGCAGGGTTAGGGCAAGGCA
CGCCAGCCCTCAGCCATGGGGTAGCCAACCCTAGGTCTAGGGCCAGCGGA
CCCTATGGCTAGGGTCGTCAACCCACAGTAAAGGTCAACAACATCAACAG
CTTCAGGATCCTGTGCCACTGCCCTGTATGGAGGCACACGTGGTCACGTT
TTCCACTCTCTCTCTCTCTTGTAGAGAAGACGCGCACGACCCCCACTTTT
ATGGTGCGCTGCTGCCCGCCTACACGGTGTTTCCTACCTGCGCTTCAGAT
GGTGCAGTGGGCGTTTCTGTGCCCACACCCCATCGTAATCAATATGCCAC
AAGTGCTGCTTTCAGGATGGCCATGGTCCCTCAGGCGACTCCTGCTTTGG
GCTGCATTGTTGCATTCACCAGAATGCGTGCTGGCTGATGTAGCTGCCTT
GCTTCTGTGTCAACAAATTGGACCAC

Coding sequence (CDS) from alignment at Contig_542:4356..7431-

>mRNA_19033 ID=mRNA_19033|Name=jgi.p|Trimin1|354744|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=387bp|location=Sequence derived from alignment at Contig_542:4356..7431- (Tribonema minus UTEX_B_3156 )
ATGATGCGCCACATGAAGCGCGTGGCAAAGCTCGGTCTGCCCGCAGACCA
GCGCAAGGCCCTGTTGCGGTCTCTCACAACGGAGGTCATACGGCACGGCC
GCATTAAGACGACGCTCGTGCGTGCGCGCGCTGTGCGAAAGTATGTTGAC
CACATGATCCAGCTGGGCAAGGACGGTTCGCTGCACGCGCGTCGCCAGGC
GATGGGCTACATGTACGACAAGGCGCTCGTGCACGCGCTGTTTGAGCAGG
CGCCGGAGCGCTACGGAGAGCGCAATGGCGGCTACTGCCGGGTGCTCAAG
ACCATGCCCCGCCAGGGGACAACGCCAAGATGGCCATCATTGAGCTGGTC
TAAGAAACGGAACCAGCATGCACATTTGCAGGGTTAG