Trimin1|354744|estExt_Genemark1.C_Ctg_5420002 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	jgi.p\|Trimin1\|354744
Unique Name	Trimin1\|354744\|estExt_Genemark1.C_Ctg_5420002
Type	polypeptide
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length	129

Homology

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BLAST of jgi.p|Trimin1|354744 vs. uniprot
Match: A0A835YQB6_9STRA (RK17, ribosomal protein 17 50S large ribosomal subunit, chloroplast n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQB6_9STRA)

HSP 1 Score: 262 bits (669), Expect = 1.070e-88
Identity = 128/128 (100.00%), Postives = 128/128 (100.00%), Query Frame = 0

Query:    1 MMRHMKRVAKLGLPADQRKALLRSLTTEVIRHGRIKTTLVRARAVRKYVDHMIQLGKDGSLHARRQAMGYMYDKALVHALFEQAPERYGERNGGYCRVLKTMPRQGTTPRWPSLSWSKKRNQHAHLQG 128
            MMRHMKRVAKLGLPADQRKALLRSLTTEVIRHGRIKTTLVRARAVRKYVDHMIQLGKDGSLHARRQAMGYMYDKALVHALFEQAPERYGERNGGYCRVLKTMPRQGTTPRWPSLSWSKKRNQHAHLQG
Sbjct:    1 MMRHMKRVAKLGLPADQRKALLRSLTTEVIRHGRIKTTLVRARAVRKYVDHMIQLGKDGSLHARRQAMGYMYDKALVHALFEQAPERYGERNGGYCRVLKTMPRQGTTPRWPSLSWSKKRNQHAHLQG 128

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BLAST of jgi.p|Trimin1|354744 vs. uniprot
Match: A0A836CL42_9STRA (Ribosomal protein L17 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CL42_9STRA)

HSP 1 Score: 206 bits (524), Expect = 4.670e-66
Identity = 102/106 (96.23%), Postives = 105/106 (99.06%), Query Frame = 0

Query:    1 MMRHMKRVAKLGLPADQRKALLRSLTTEVIRHGRIKTTLVRARAVRKYVDHMIQLGKDGSLHARRQAMGYMYDKALVHALFEQAPERYGERNGGYCRVLKTMPRQG 106
            MMRHMKRVAKLG PADQRKALLRSLTTEVIRHGRIKTTLVRARAVRK+VDHMIQLGKDGSLH+RRQAMG+MYDKALVHALFEQAPERYGERNGGYCRVLKTMPRQG
Sbjct:   49 MMRHMKRVAKLGKPADQRKALLRSLTTEVIRHGRIKTTLVRARAVRKFVDHMIQLGKDGSLHSRRQAMGFMYDKALVHALFEQAPERYGERNGGYCRVLKTMPRQG 154

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BLAST of jgi.p|Trimin1|354744 vs. uniprot
Match: A0A7S1C082_9STRA (Hypothetical protein n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1C082_9STRA)

HSP 1 Score: 180 bits (457), Expect = 7.590e-56
Identity = 87/106 (82.08%), Postives = 98/106 (92.45%), Query Frame = 0

Query:    1 MMRHMKRVAKLGLPADQRKALLRSLTTEVIRHGRIKTTLVRARAVRKYVDHMIQLGKDGSLHARRQAMGYMYDKALVHALFEQAPERYGERNGGYCRVLKTMPRQG 106
            MMRH K++A+ G PADQRKAL+R+LTTE+IRHGRIKTTLVRARAVRK+VDHMIQLGKDGSLH+RRQAM +MYDK LVHALFE APERY +RNGGY RVL+TMPRQG
Sbjct:   50 MMRHRKKIARCGRPADQRKALMRALTTEIIRHGRIKTTLVRARAVRKHVDHMIQLGKDGSLHSRRQAMAWMYDKQLVHALFEAAPERYEDRNGGYTRVLRTMPRQG 155

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BLAST of jgi.p|Trimin1|354744 vs. uniprot
Match: A0A7S0CE24_9STRA (Hypothetical protein n=2 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CE24_9STRA)

HSP 1 Score: 179 bits (454), Expect = 2.390e-55
Identity = 85/106 (80.19%), Postives = 99/106 (93.40%), Query Frame = 0

Query:    1 MMRHMKRVAKLGLPADQRKALLRSLTTEVIRHGRIKTTLVRARAVRKYVDHMIQLGKDGSLHARRQAMGYMYDKALVHALFEQAPERYGERNGGYCRVLKTMPRQG 106
            MMRH K++AKLG PADQRKALLR+LTTEVIRHGRIKTTL+RA+AVRK+VDHMI LGKDGSLH+RRQA+ ++YDK LVHALF+ AP+RYG+R GGYCRVL+TMPRQG
Sbjct:   53 MMRHRKKLAKLGKPADQRKALLRALTTEVIRHGRIKTTLIRAKAVRKHVDHMITLGKDGSLHSRRQALAWVYDKNLVHALFDAAPDRYGDREGGYCRVLRTMPRQG 158

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BLAST of jgi.p|Trimin1|354744 vs. uniprot
Match: A0A7S4HPH3_9STRA (Hypothetical protein n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4HPH3_9STRA)

HSP 1 Score: 178 bits (452), Expect = 4.510e-55
Identity = 88/106 (83.02%), Postives = 97/106 (91.51%), Query Frame = 0

Query:    1 MMRHMKRVAKLGLPADQRKALLRSLTTEVIRHGRIKTTLVRARAVRKYVDHMIQLGKDGSLHARRQAMGYMYDKALVHALFEQAPERYGERNGGYCRVLKTMPRQG 106
            MMRH K+VAKLG PADQRKALLR+LTTEVIRHGRIKTTLVRA+AVRK+VDHMIQLGK G LHARRQA+G+MYDK LVH+LFE APERY +R GGY RVL+TMPRQG
Sbjct:   51 MMRHRKKVAKLGKPADQRKALLRALTTEVIRHGRIKTTLVRAKAVRKHVDHMIQLGKRGDLHARRQALGWMYDKDLVHSLFEAAPERYSDREGGYTRVLRTMPRQG 156

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BLAST of jgi.p|Trimin1|354744 vs. uniprot
Match: B8CAZ9_THAPS (RK17, ribosomal protein 17 50S large ribosomal subunit, chloroplast n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CAZ9_THAPS)

HSP 1 Score: 176 bits (447), Expect = 5.130e-55
Identity = 85/105 (80.95%), Postives = 97/105 (92.38%), Query Frame = 0

Query:    2 MRHMKRVAKLGLPADQRKALLRSLTTEVIRHGRIKTTLVRARAVRKYVDHMIQLGKDGSLHARRQAMGYMYDKALVHALFEQAPERYGERNGGYCRVLKTMPRQG 106
            MRH K++ KLG PADQRKALLR+LTTE+IRHGRIKTTLVRA+AVRK+VDHMI+LGK G LHARRQA+G++YDK LVH+LFE APERYGERNGGY RVL+TMPRQG
Sbjct:    1 MRHRKKLPKLGKPADQRKALLRALTTEIIRHGRIKTTLVRAKAVRKHVDHMIELGKRGDLHARRQALGWVYDKDLVHSLFEAAPERYGERNGGYTRVLRTMPRQG 105

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BLAST of jgi.p|Trimin1|354744 vs. uniprot
Match: K0TAZ9_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TAZ9_THAOC)

HSP 1 Score: 179 bits (454), Expect = 1.780e-54
Identity = 87/106 (82.08%), Postives = 97/106 (91.51%), Query Frame = 0

Query:    1 MMRHMKRVAKLGLPADQRKALLRSLTTEVIRHGRIKTTLVRARAVRKYVDHMIQLGKDGSLHARRQAMGYMYDKALVHALFEQAPERYGERNGGYCRVLKTMPRQG 106
            MMRH KRV KLG PADQRKALLR+LTTE+IRHGRIKTT VRA+AVRK+VDHM++LGK G LHARRQA+G++YDK LVHALFE APERYGERNGGY RVL+TMPRQG
Sbjct:  118 MMRHRKRVPKLGKPADQRKALLRALTTEIIRHGRIKTTAVRAKAVRKHVDHMVELGKRGDLHARRQALGWIYDKDLVHALFEAAPERYGERNGGYTRVLRTMPRQG 223

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BLAST of jgi.p|Trimin1|354744 vs. uniprot
Match: A0A7S2CVF2_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CVF2_9STRA)

HSP 1 Score: 176 bits (445), Expect = 4.200e-54
Identity = 87/106 (82.08%), Postives = 95/106 (89.62%), Query Frame = 0

Query:    1 MMRHMKRVAKLGLPADQRKALLRSLTTEVIRHGRIKTTLVRARAVRKYVDHMIQLGKDGSLHARRQAMGYMYDKALVHALFEQAPERYGERNGGYCRVLKTMPRQG 106
            MMRH KR+AKLG PADQRKALLRSLTTEVIRHGRIKTTLVRA+A+R  VD MIQL KDGSLH+RRQAM ++YDK LVHALFE APERY +R GGYCRVL+TMPRQG
Sbjct:   44 MMRHGKRMAKLGKPADQRKALLRSLTTEVIRHGRIKTTLVRAKAIRPCVDKMIQLSKDGSLHSRRQAMAFIYDKELVHALFENAPERYADREGGYCRVLRTMPRQG 149

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BLAST of jgi.p|Trimin1|354744 vs. uniprot
Match: A0A7S3V465_9STRA (Hypothetical protein (Fragment) n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3V465_9STRA)

HSP 1 Score: 175 bits (444), Expect = 5.080e-54
Identity = 87/105 (82.86%), Postives = 95/105 (90.48%), Query Frame = 0

Query:    1 MMRHMKRVAKLGLPADQRKALLRSLTTEVIRHGRIKTTLVRARAVRKYVDHMIQLGKDGSLHARRQAMGYMYDKALVHALFEQAPERYGERNGGYCRVLKTMPRQ 105
            MMRH K+VAKLG PADQRKALLR+LTTEVIRHGRIKTTL RA+AVRK+VDHMIQLGK G LHARRQAMG++YDK LVH+LFE APERY ER GGY RVL+TMPRQ
Sbjct:   51 MMRHRKKVAKLGKPADQRKALLRALTTEVIRHGRIKTTLTRAKAVRKHVDHMIQLGKRGDLHARRQAMGWIYDKDLVHSLFEAAPERYSEREGGYTRVLRTMPRQ 155

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BLAST of jgi.p|Trimin1|354744 vs. uniprot
Match: Q5K251_GUITH (50S ribosomal protein L17 n=2 Tax=Guillardia theta TaxID=55529 RepID=Q5K251_GUITH)

HSP 1 Score: 175 bits (444), Expect = 5.250e-54
Identity = 89/106 (83.96%), Postives = 94/106 (88.68%), Query Frame = 0

Query:    1 MMRHMKRVAKLGLPADQRKALLRSLTTEVIRHGRIKTTLVRARAVRKYVDHMIQLGKDGSLHARRQAMGYMYDKALVHALFEQAPERYGERNGGYCRVLKTMPRQG 106
            MMRH KRVAKLGLP DQRKALLRSLTTEVIRHGRI TTL RA+AVR  VD MI L KDGSL ARRQAMG+MYDK LVHALFEQAPERY ERNGGYCRVL+T+PR+G
Sbjct:   40 MMRHGKRVAKLGLPQDQRKALLRSLTTEVIRHGRITTTLARAKAVRSEVDKMITLAKDGSLSARRQAMGWMYDKQLVHALFEQAPERYSERNGGYCRVLQTLPRKG 145

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|354744 vs. uniprot

BLAST of jgi.p|Trimin1|354744 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A835YQB6_9STRA	1.070e-88	100.00	RK17, ribosomal protein 17 50S large ribosomal sub...	[more]
A0A836CL42_9STRA	4.670e-66	96.23	Ribosomal protein L17 n=1 Tax=Tribonema minus TaxI...	[more]
A0A7S1C082_9STRA	7.590e-56	82.08	Hypothetical protein n=2 Tax=Corethron hystrix Tax...	[more]
A0A7S0CE24_9STRA	2.390e-55	80.19	Hypothetical protein n=2 Tax=Proboscia inermis Tax...	[more]
A0A7S4HPH3_9STRA	4.510e-55	83.02	Hypothetical protein n=2 Tax=Odontella aurita TaxI...	[more]
B8CAZ9_THAPS	5.130e-55	80.95	RK17, ribosomal protein 17 50S large ribosomal sub...	[more]
K0TAZ9_THAOC	1.780e-54	82.08	Uncharacterized protein n=1 Tax=Thalassiosira ocea...	[more]
A0A7S2CVF2_9STRA	4.200e-54	82.08	Hypothetical protein n=1 Tax=Florenciella parvula ...	[more]
A0A7S3V465_9STRA	5.080e-54	82.86	Hypothetical protein (Fragment) n=1 Tax=Chaetocero...	[more]
Q5K251_GUITH	5.250e-54	83.96	50S ribosomal protein L17 n=2 Tax=Guillardia theta...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000456	Ribosomal protein L17	PFAM	PF01196	Ribosomal_L17	coord: 21..107 e-value: 1.7E-27 score: 96.2
IPR000456	Ribosomal protein L17	TIGRFAM	TIGR00059	TIGR00059	coord: 8..107 e-value: 7.2E-33 score: 111.2
IPR000456	Ribosomal protein L17	PANTHER	PTHR14413	RIBOSOMAL PROTEIN L17	coord: 2..107
IPR036373	Ribosomal protein L17 superfamily	GENE3D	3.90.1030.10	Ribosomal protein L17	coord: 1..111 e-value: 2.6E-38 score: 132.9
IPR036373	Ribosomal protein L17 superfamily	SUPERFAMILY	64263	Prokaryotic ribosomal protein L17	coord: 2..109
None	No IPR available	PANTHER	PTHR14413:SF23	SUBFAMILY NOT NAMED	coord: 2..107

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_542	contig	Contig_542:4791..7252 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|354744	mRNA_19033	Tribonema minus UTEX_B_3156	mRNA	Contig_542 4356..7431 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Trimin1|354744|estExt_Genemark1.C_Ctg_5420002 ID=Trimin1|354744|estExt_Genemark1.C_Ctg_5420002|Name=jgi.p|Trimin1|354744|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=129bp
MMRHMKRVAKLGLPADQRKALLRSLTTEVIRHGRIKTTLVRARAVRKYVD
HMIQLGKDGSLHARRQAMGYMYDKALVHALFEQAPERYGERNGGYCRVLK
TMPRQGTTPRWPSLSWSKKRNQHAHLQG*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000456	Ribosomal_L17
IPR036373	Ribosomal_L17_sf