mRNA_8165 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|167707 vs. uniprot
Match: A0A836CBS9_9STRA (2Fe-2S ferredoxin-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBS9_9STRA) HSP 1 Score: 206 bits (524), Expect = 1.930e-67 Identity = 101/101 (100.00%), Postives = 101/101 (100.00%), Query Frame = 1 Query: 1 MGFGDAFKNAFSNEEFGAKQNAGLKNGPKYVDVIIDGKKVQAVAGQRLSQVCASAGVKISYNCQKGDCGTCEALGDGKKIRVCQTIVPLNAKSFTVKTKKY 303 MGFGDAFKNAFSNEEFGAKQNAGLKNGPKYVDVIIDGKKVQAVAGQRLSQVCASAGVKISYNCQKGDCGTCEALGDGKKIRVCQTIVPLNAKSFTVKTKKY Sbjct: 1 MGFGDAFKNAFSNEEFGAKQNAGLKNGPKYVDVIIDGKKVQAVAGQRLSQVCASAGVKISYNCQKGDCGTCEALGDGKKIRVCQTIVPLNAKSFTVKTKKY 101
BLAST of jgi.p|Trimin1|167707 vs. uniprot
Match: D8LD52_ECTSI (2Fe-2S ferredoxin-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LD52_ECTSI) HSP 1 Score: 112 bits (281), Expect = 1.230e-29 Identity = 52/99 (52.53%), Postives = 68/99 (68.69%), Query Frame = 1 Query: 1 MGFGDAFKNAFSNEEFGAKQNAGLKNGPKYVDVIIDGKKVQAVAGQRLSQVCASAGVKISYNCQKGDCGTCEALGDGKKIRVCQTIVPLNAKSFTVKTK 297 MG+GDA AF+NE+ ++N GLKN P V ++GK +QAV GQRL V +A KI Y C+KGDCGTCE++ DG+KIR+C+ IVP N +KTK Sbjct: 62 MGWGDALGKAFANEDMAPQKNPGLKNAPNTCMVTVNGKTIQAVQGQRLRDVVLAAKAKIEYGCEKGDCGTCESIVDGRKIRICKAIVPRNKTKVNIKTK 160
BLAST of jgi.p|Trimin1|167707 vs. uniprot
Match: A0A7S4JWQ5_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4JWQ5_9STRA) HSP 1 Score: 108 bits (271), Expect = 1.990e-28 Identity = 51/87 (58.62%), Postives = 69/87 (79.31%), Query Frame = 1 Query: 7 FGDAFKNAFSNEE-FGAKQNAGLKNGPKYVDVIIDGKKVQAVAGQRLSQVCASAGVKISYNCQKGDCGTCEALGDGKKIRVCQTIVP 264 FG+A K AFSN++ G +QNAGLK GP Y +V I+GK+V+AV GQ++SQV ASA VKISY+C+KGDCGTCE +G+ ++ CQ ++P Sbjct: 41 FGNALKGAFSNDDSLGKQQNAGLKGGPDYTEVTINGKQVKAVVGQKVSQVAASARVKISYSCKKGDCGTCEINMNGRVVKACQGVIP 127
BLAST of jgi.p|Trimin1|167707 vs. uniprot
Match: A0A7R9VC32_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9VC32_9STRA) HSP 1 Score: 102 bits (255), Expect = 2.150e-26 Identity = 49/83 (59.04%), Postives = 65/83 (78.31%), Query Frame = 1 Query: 7 FGDAFKNAFSNEE-FGAKQNAGLKNGPKYVDVIIDGKKVQAVAGQRLSQVCASAGVKISYNCQKGDCGTCEALGDGKKIRVCQ 252 FG+A KNAF N+E G ++NAGLK GP Y +V I+GK V+AV GQ++SQV ASA VKI+Y+C+KGDCGTCE +G+ ++ CQ Sbjct: 21 FGNALKNAFGNDESLGERENAGLKGGPDYNEVTINGKPVKAVVGQKVSQVAASARVKITYSCKKGDCGTCEINMNGRVVKACQ 103
BLAST of jgi.p|Trimin1|167707 vs. uniprot
Match: A0A7S3Q0A3_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3Q0A3_9STRA) HSP 1 Score: 103 bits (256), Expect = 8.680e-26 Identity = 55/89 (61.80%), Postives = 64/89 (71.91%), Query Frame = 1 Query: 4 GFGDAFKNAF-SNEEFGAKQNAGLKNGPKYVD-VIIDGKKVQAVAGQRLSQVCASAGVKISYNCQKGDCGTCEALGDGKKIRVCQTIVP 264 GFGDAFKNAF S++ G QNAGL GPK D V I+GKKV A+ GQ++S V ASA VKISYNC KGDCGTC +G+ + CQ IVP Sbjct: 71 GFGDAFKNAFASDDSLGKAQNAGLSGGPKTNDNVSINGKKVNAIVGQKVSVVAASARVKISYNCNKGDCGTCNVKINGRVQKACQQIVP 159
BLAST of jgi.p|Trimin1|167707 vs. uniprot
Match: A0A4D9DAQ6_9STRA (2Fe-2S ferredoxin-type domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DAQ6_9STRA) HSP 1 Score: 92.4 bits (228), Expect = 9.630e-22 Identity = 51/102 (50.00%), Postives = 62/102 (60.78%), Query Frame = 1 Query: 1 MGFGDAFKNAFSNEEFGAKQ-NAGLKNGPKYVDVII--DGKKVQAVAGQRLSQVCASAGVKISYNCQKGDCGTCEALGDGKKIRVCQTIVPLNAKSFTVKTK 297 MG+ DA K F NEE NAGLKNGP V + GK+V AVAGQ L V +A + I YNC+KG+CGTCE + +GKK+R C IVP A+ V K Sbjct: 48 MGWFDAVKKGFENEEMSQPAPNAGLKNGPPTVSITFMPAGKQVTAVAGQSLKDVAQAARIPIKYNCKKGECGTCEVVLNGKKVRTCVGIVPRGARKNEVTIK 149
BLAST of jgi.p|Trimin1|167707 vs. uniprot
Match: A0A448YZS5_9STRA (2Fe-2S ferredoxin-type domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448YZS5_9STRA) HSP 1 Score: 89.7 bits (221), Expect = 7.240e-21 Identity = 48/90 (53.33%), Postives = 62/90 (68.89%), Query Frame = 1 Query: 4 GFGDAFKNAFSNEE-FGAKQNAGLKNGPKYVD-VIIDGKKVQA-VAGQRLSQVCASAGVKISYNCQKGDCGTCEALGDGKKIRVCQTIVP 264 GFGDAFKNAF+N++ GA++N GL GP Y + V ++GK V V GQ+L+ V A VKI NCQ GDCGTC +G+K++ CQT VP Sbjct: 38 GFGDAFKNAFANDDDLGARKNEGLSGGPNYNESVTMNGKAVPGCVVGQKLTVVGGKARVKIPVNCQAGDCGTCVVKMNGRKVKACQTQVP 127
BLAST of jgi.p|Trimin1|167707 vs. uniprot
Match: A0A6U3ZFR1_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A6U3ZFR1_9STRA) HSP 1 Score: 85.5 bits (210), Expect = 3.590e-19 Identity = 45/91 (49.45%), Postives = 62/91 (68.13%), Query Frame = 1 Query: 22 KNAFSNEE-FGAKQNAGLKNGPKYVD-VIIDGKKV-QAVAGQRLSQVCASAGVKISYNCQKGDCGTCEALGDGKKIRVCQTIVPLNAKSFT 285 K AFSN++ GA +N GL NGP+Y + V ++GK V +AV Q++SQVCASA VK+ YNCQ GDCGTC +G++ + C + VP + T Sbjct: 47 KGAFSNDDSLGAAKNEGLSNGPRYNENVTVNGKAVPKAVVDQKISQVCASARVKVPYNCQNGDCGTCMVKINGRQAKACVSKVPAGKCAIT 137
BLAST of jgi.p|Trimin1|167707 vs. uniprot
Match: B8C2R5_THAPS (2Fe-2S ferredoxin-type domain-containing protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C2R5_THAPS) HSP 1 Score: 82.4 bits (202), Expect = 5.630e-18 Identity = 43/84 (51.19%), Postives = 58/84 (69.05%), Query Frame = 1 Query: 22 KNAFSNEE-FGAKQNAGLKNGPKYVD-VIIDGKKV-QAVAGQRLSQVCASAGVKISYNCQKGDCGTCEALGDGKKIRVCQTIVP 264 K+AFSN++ G +NAGL GPKY + V ++GK V V Q++SQVC +A VK+ YNCQ G+CGTC +G+KIR C + VP Sbjct: 46 KDAFSNDDSLGKAKNAGLSGGPKYNENVTVNGKAVPNVVVDQKISQVCNAARVKVPYNCQNGECGTCTVKMNGRKIRACVSKVP 129
BLAST of jgi.p|Trimin1|167707 vs. uniprot
Match: A0A7S0B0B1_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0B0B1_9STRA) HSP 1 Score: 82.8 bits (203), Expect = 5.770e-18 Identity = 44/83 (53.01%), Postives = 56/83 (67.47%), Query Frame = 1 Query: 22 KNAFSNEE-FGAKQNAGLKNGPKYVD-VIIDGKKVQAVAGQRLSQVCASAGVKISYNCQKGDCGTCEALGDGKKIRVCQTIVP 264 K AF+N++ G QNAGL GPK + V I+GK V AV GQ++SQV ASA VKI Y+C+ GDCGTC +G+ + CQ VP Sbjct: 62 KGAFANDDDLGKPQNAGLTGGPKVNENVSINGKPVNAVVGQKISQVAASARVKIPYSCKNGDCGTCVVKINGRNQKACQATVP 144 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|167707 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_8165 ID=mRNA_8165|Name=jgi.p|Trimin1|167707|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=306bp|location=Sequence derived from alignment at Contig_53:300368..301761+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGGGTTTCGGCGACGCCTTCAAAAATGCATTCAGCAACGAGGAGTTCGGback to top protein sequence of jgi.p|Trimin1|167707 >Trimin1|167707|e_gw1.53.70.1 ID=Trimin1|167707|e_gw1.53.70.1|Name=jgi.p|Trimin1|167707|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=102bp MGFGDAFKNAFSNEEFGAKQNAGLKNGPKYVDVIIDGKKVQAVAGQRLSQback to top mRNA from alignment at Contig_53:300368..301761+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_8165 ID=mRNA_8165|Name=jgi.p|Trimin1|167707|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1394bp|location=Sequence derived from alignment at Contig_53:300368..301761+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_53:300368..301761+ >mRNA_8165 ID=mRNA_8165|Name=jgi.p|Trimin1|167707|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=306bp|location=Sequence derived from alignment at Contig_53:300368..301761+ (Tribonema minus UTEX_B_3156 )back to top |