mRNA_8165 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|167707
Unique NamemRNA_8165
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|167707 vs. uniprot
Match: A0A836CBS9_9STRA (2Fe-2S ferredoxin-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBS9_9STRA)

HSP 1 Score: 206 bits (524), Expect = 1.930e-67
Identity = 101/101 (100.00%), Postives = 101/101 (100.00%), Query Frame = 1
Query:    1 MGFGDAFKNAFSNEEFGAKQNAGLKNGPKYVDVIIDGKKVQAVAGQRLSQVCASAGVKISYNCQKGDCGTCEALGDGKKIRVCQTIVPLNAKSFTVKTKKY 303
            MGFGDAFKNAFSNEEFGAKQNAGLKNGPKYVDVIIDGKKVQAVAGQRLSQVCASAGVKISYNCQKGDCGTCEALGDGKKIRVCQTIVPLNAKSFTVKTKKY
Sbjct:    1 MGFGDAFKNAFSNEEFGAKQNAGLKNGPKYVDVIIDGKKVQAVAGQRLSQVCASAGVKISYNCQKGDCGTCEALGDGKKIRVCQTIVPLNAKSFTVKTKKY 101          
BLAST of jgi.p|Trimin1|167707 vs. uniprot
Match: D8LD52_ECTSI (2Fe-2S ferredoxin-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LD52_ECTSI)

HSP 1 Score: 112 bits (281), Expect = 1.230e-29
Identity = 52/99 (52.53%), Postives = 68/99 (68.69%), Query Frame = 1
Query:    1 MGFGDAFKNAFSNEEFGAKQNAGLKNGPKYVDVIIDGKKVQAVAGQRLSQVCASAGVKISYNCQKGDCGTCEALGDGKKIRVCQTIVPLNAKSFTVKTK 297
            MG+GDA   AF+NE+   ++N GLKN P    V ++GK +QAV GQRL  V  +A  KI Y C+KGDCGTCE++ DG+KIR+C+ IVP N     +KTK
Sbjct:   62 MGWGDALGKAFANEDMAPQKNPGLKNAPNTCMVTVNGKTIQAVQGQRLRDVVLAAKAKIEYGCEKGDCGTCESIVDGRKIRICKAIVPRNKTKVNIKTK 160          
BLAST of jgi.p|Trimin1|167707 vs. uniprot
Match: A0A7S4JWQ5_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4JWQ5_9STRA)

HSP 1 Score: 108 bits (271), Expect = 1.990e-28
Identity = 51/87 (58.62%), Postives = 69/87 (79.31%), Query Frame = 1
Query:    7 FGDAFKNAFSNEE-FGAKQNAGLKNGPKYVDVIIDGKKVQAVAGQRLSQVCASAGVKISYNCQKGDCGTCEALGDGKKIRVCQTIVP 264
            FG+A K AFSN++  G +QNAGLK GP Y +V I+GK+V+AV GQ++SQV ASA VKISY+C+KGDCGTCE   +G+ ++ CQ ++P
Sbjct:   41 FGNALKGAFSNDDSLGKQQNAGLKGGPDYTEVTINGKQVKAVVGQKVSQVAASARVKISYSCKKGDCGTCEINMNGRVVKACQGVIP 127          
BLAST of jgi.p|Trimin1|167707 vs. uniprot
Match: A0A7R9VC32_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9VC32_9STRA)

HSP 1 Score: 102 bits (255), Expect = 2.150e-26
Identity = 49/83 (59.04%), Postives = 65/83 (78.31%), Query Frame = 1
Query:    7 FGDAFKNAFSNEE-FGAKQNAGLKNGPKYVDVIIDGKKVQAVAGQRLSQVCASAGVKISYNCQKGDCGTCEALGDGKKIRVCQ 252
            FG+A KNAF N+E  G ++NAGLK GP Y +V I+GK V+AV GQ++SQV ASA VKI+Y+C+KGDCGTCE   +G+ ++ CQ
Sbjct:   21 FGNALKNAFGNDESLGERENAGLKGGPDYNEVTINGKPVKAVVGQKVSQVAASARVKITYSCKKGDCGTCEINMNGRVVKACQ 103          
BLAST of jgi.p|Trimin1|167707 vs. uniprot
Match: A0A7S3Q0A3_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3Q0A3_9STRA)

HSP 1 Score: 103 bits (256), Expect = 8.680e-26
Identity = 55/89 (61.80%), Postives = 64/89 (71.91%), Query Frame = 1
Query:    4 GFGDAFKNAF-SNEEFGAKQNAGLKNGPKYVD-VIIDGKKVQAVAGQRLSQVCASAGVKISYNCQKGDCGTCEALGDGKKIRVCQTIVP 264
            GFGDAFKNAF S++  G  QNAGL  GPK  D V I+GKKV A+ GQ++S V ASA VKISYNC KGDCGTC    +G+  + CQ IVP
Sbjct:   71 GFGDAFKNAFASDDSLGKAQNAGLSGGPKTNDNVSINGKKVNAIVGQKVSVVAASARVKISYNCNKGDCGTCNVKINGRVQKACQQIVP 159          
BLAST of jgi.p|Trimin1|167707 vs. uniprot
Match: A0A4D9DAQ6_9STRA (2Fe-2S ferredoxin-type domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DAQ6_9STRA)

HSP 1 Score: 92.4 bits (228), Expect = 9.630e-22
Identity = 51/102 (50.00%), Postives = 62/102 (60.78%), Query Frame = 1
Query:    1 MGFGDAFKNAFSNEEFGAKQ-NAGLKNGPKYVDVII--DGKKVQAVAGQRLSQVCASAGVKISYNCQKGDCGTCEALGDGKKIRVCQTIVPLNAKSFTVKTK 297
            MG+ DA K  F NEE      NAGLKNGP  V +     GK+V AVAGQ L  V  +A + I YNC+KG+CGTCE + +GKK+R C  IVP  A+   V  K
Sbjct:   48 MGWFDAVKKGFENEEMSQPAPNAGLKNGPPTVSITFMPAGKQVTAVAGQSLKDVAQAARIPIKYNCKKGECGTCEVVLNGKKVRTCVGIVPRGARKNEVTIK 149          
BLAST of jgi.p|Trimin1|167707 vs. uniprot
Match: A0A448YZS5_9STRA (2Fe-2S ferredoxin-type domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448YZS5_9STRA)

HSP 1 Score: 89.7 bits (221), Expect = 7.240e-21
Identity = 48/90 (53.33%), Postives = 62/90 (68.89%), Query Frame = 1
Query:    4 GFGDAFKNAFSNEE-FGAKQNAGLKNGPKYVD-VIIDGKKVQA-VAGQRLSQVCASAGVKISYNCQKGDCGTCEALGDGKKIRVCQTIVP 264
            GFGDAFKNAF+N++  GA++N GL  GP Y + V ++GK V   V GQ+L+ V   A VKI  NCQ GDCGTC    +G+K++ CQT VP
Sbjct:   38 GFGDAFKNAFANDDDLGARKNEGLSGGPNYNESVTMNGKAVPGCVVGQKLTVVGGKARVKIPVNCQAGDCGTCVVKMNGRKVKACQTQVP 127          
BLAST of jgi.p|Trimin1|167707 vs. uniprot
Match: A0A6U3ZFR1_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A6U3ZFR1_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 3.590e-19
Identity = 45/91 (49.45%), Postives = 62/91 (68.13%), Query Frame = 1
Query:   22 KNAFSNEE-FGAKQNAGLKNGPKYVD-VIIDGKKV-QAVAGQRLSQVCASAGVKISYNCQKGDCGTCEALGDGKKIRVCQTIVPLNAKSFT 285
            K AFSN++  GA +N GL NGP+Y + V ++GK V +AV  Q++SQVCASA VK+ YNCQ GDCGTC    +G++ + C + VP    + T
Sbjct:   47 KGAFSNDDSLGAAKNEGLSNGPRYNENVTVNGKAVPKAVVDQKISQVCASARVKVPYNCQNGDCGTCMVKINGRQAKACVSKVPAGKCAIT 137          
BLAST of jgi.p|Trimin1|167707 vs. uniprot
Match: B8C2R5_THAPS (2Fe-2S ferredoxin-type domain-containing protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C2R5_THAPS)

HSP 1 Score: 82.4 bits (202), Expect = 5.630e-18
Identity = 43/84 (51.19%), Postives = 58/84 (69.05%), Query Frame = 1
Query:   22 KNAFSNEE-FGAKQNAGLKNGPKYVD-VIIDGKKV-QAVAGQRLSQVCASAGVKISYNCQKGDCGTCEALGDGKKIRVCQTIVP 264
            K+AFSN++  G  +NAGL  GPKY + V ++GK V   V  Q++SQVC +A VK+ YNCQ G+CGTC    +G+KIR C + VP
Sbjct:   46 KDAFSNDDSLGKAKNAGLSGGPKYNENVTVNGKAVPNVVVDQKISQVCNAARVKVPYNCQNGECGTCTVKMNGRKIRACVSKVP 129          
BLAST of jgi.p|Trimin1|167707 vs. uniprot
Match: A0A7S0B0B1_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0B0B1_9STRA)

HSP 1 Score: 82.8 bits (203), Expect = 5.770e-18
Identity = 44/83 (53.01%), Postives = 56/83 (67.47%), Query Frame = 1
Query:   22 KNAFSNEE-FGAKQNAGLKNGPKYVD-VIIDGKKVQAVAGQRLSQVCASAGVKISYNCQKGDCGTCEALGDGKKIRVCQTIVP 264
            K AF+N++  G  QNAGL  GPK  + V I+GK V AV GQ++SQV ASA VKI Y+C+ GDCGTC    +G+  + CQ  VP
Sbjct:   62 KGAFANDDDLGKPQNAGLTGGPKVNENVSINGKPVNAVVGQKISQVAASARVKIPYSCKNGDCGTCVVKINGRNQKACQATVP 144          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|167707 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CBS9_9STRA1.930e-67100.002Fe-2S ferredoxin-type domain-containing protein n... [more]
D8LD52_ECTSI1.230e-2952.532Fe-2S ferredoxin-type domain-containing protein n... [more]
A0A7S4JWQ5_9STRA1.990e-2858.62Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A7R9VC32_9STRA2.150e-2659.04Hypothetical protein (Fragment) n=1 Tax=Pseudictyo... [more]
A0A7S3Q0A3_9STRA8.680e-2661.80Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A4D9DAQ6_9STRA9.630e-2250.002Fe-2S ferredoxin-type domain-containing protein n... [more]
A0A448YZS5_9STRA7.240e-2153.332Fe-2S ferredoxin-type domain-containing protein n... [more]
A0A6U3ZFR1_9STRA3.590e-1949.45Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
B8C2R5_THAPS5.630e-1851.192Fe-2S ferredoxin-type domain-containing protein n... [more]
A0A7S0B0B1_9STRA5.770e-1853.01Hypothetical protein n=1 Tax=Minutocellus polymorp... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_53contigContig_53:300368..301761 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|167707|e_gw1.53.70.1
Description2Fe-2S iron-sulfur cluster binding domain
COG categoryS
Max annot lvl2759|Eukaryota
EggNOG OGs2EAS1@1|root,2SGYY@2759|Eukaryota
Evalue2.01e-30
Seed ortholog2880.D8LD52
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionBeta-grasp domain
Ec32 orthologEc-11_000490.1
TranscriptId168029
TrackFilteredModels1
ProteinId167707
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|167707gene_8165Tribonema minus UTEX_B_3156 geneContig_53 300368..301761 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_8165_1exon_8165_1Tribonema minus UTEX_B_3156 exonContig_53 300368..300517 +
exon_8165_2exon_8165_2Tribonema minus UTEX_B_3156 exonContig_53 301606..301761 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_8165CDS_8165Tribonema minus UTEX_B_3156 CDSContig_53 300368..300517 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|167707Trimin1|167707|e_gw1.53.70.1Tribonema minus UTEX_B_3156 polypeptideContig_53 300368..301761 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_8165 ID=mRNA_8165|Name=jgi.p|Trimin1|167707|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=306bp|location=Sequence derived from alignment at Contig_53:300368..301761+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGGTTTCGGCGACGCCTTCAAAAATGCATTCAGCAACGAGGAGTTCGG
GGCCAAGCAGAATGCTGGTCTCAAAAATGGGCCCAAGTACGTGGACGTAA
TCATAGACGGCAAGAAGGTGCAGGCGGTGGCGGGGCAGCGGTTATCGCAG
GTGTGCGCGTCGGCGGGCGTGAAGATCAGCTACAACTGCCAGAAGGGGGA
CTGCGGCACATGCGAGGCGCTGGGAGACGGCAAGAAAATACGCGTCTGCC
AGACCATTGTGCCTCTGAACGCCAAGTCATTCACCGTCAAGACCAAAAAG
TACTAG
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protein sequence of jgi.p|Trimin1|167707

>Trimin1|167707|e_gw1.53.70.1 ID=Trimin1|167707|e_gw1.53.70.1|Name=jgi.p|Trimin1|167707|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=102bp
MGFGDAFKNAFSNEEFGAKQNAGLKNGPKYVDVIIDGKKVQAVAGQRLSQ
VCASAGVKISYNCQKGDCGTCEALGDGKKIRVCQTIVPLNAKSFTVKTKK
Y*
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mRNA from alignment at Contig_53:300368..301761+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8165 ID=mRNA_8165|Name=jgi.p|Trimin1|167707|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1394bp|location=Sequence derived from alignment at Contig_53:300368..301761+ (Tribonema minus UTEX_B_3156 )
ATGGGTTTCGGCGACGCCTTCAAAAATGCATTCAGCAACGAGGAGTTCGG GGCCAAGCAGAATGCTGGTCTCAAAAATGGGCCCAAGTACGTGGACGTAA TCATAGACGGCAAGAAGGTGCAGGCGGTGGCGGGGCAGCGGTTATCGCAG GTGAGCCCCCTGCCCATGTCAGAGGTTGAATTTGGGCTGTGACAAGCCAA TTGCAACAACCTAGTCCTCAGATGGCTAGTGTCTGCACATTACAAGCATT GCCATGGTTTCTGCGGGTTTCTTGACCCAGCCGTTAGCACTGTGCAATGT CGTTTATCTGCTCAAAGCTGACGTACGATGGGCCAAAATAGGCATAGCGT TTCAGCAAGTGCGGGTGATTCCTGCAGGCACTCTGCTGCATTTTTGTGTC AGATTTCTAGCCTCTTTTTGCGTACAAAAACTCAAGCCTTGAGTACTATA GCGACTGGTCACGTAAGACATTCCCAACATTGGCTCGCAACAGCCGCGCA GTGACAGTGACAGCGTGTGTTTATGTGTGTTGCGAGCCACTCTCATTTAG CACACCTATGAAAGCACCAGCAGTCACAGAGTGTATTATTTGTGCAGCCT GCACACTAGTTTCATAGCGCTTCTGCGCAGCAACAATGTCGCCAGTTCTC AACAGTATACAAAGTCTCATGAGTCTGAAAGCTCCAGAAACGCATGCTGC CGGTTGACACCAGCATGGTGTTTTCAGCCACTGAATCTGTGGCAAGCTCC GGTGCACTGAATGAAAGCAGCTATTTTTCTAGCACCTGCCTTGATATCAT CTGATGCGTATACAGCCCTTCAGACCACCTGCGTGTTACACGTTCATGTT AGTTGAAGGCTCTTGTGCAACCCAGTTCAAATTATTATGTCTTTGGTGCG AATGGAACAACTTTCAAGGCATGAAACAATTTGTTTTCTGGCGGCTTGTT TCAGTCTCAGGCATGCAAGGCGCATTACCATCTGTGCGTTCAAGCTGACA CGACGGTGATCTAATTTGATGCTGCTAGCTGCAGCACATAAGCCTGGCGT CACTTTTGGCACCGTGCTGTTGCTTCTCCAGAAACAGTCTTACCTGATAT CGTGCAAATGCTCCAGGCATCTGTTGCTCAGCAATCACATCACGCTACCC GTGTTTGATGATTTCACTGCTCGGAAAGCACCTGCTGATGCACTTCCGCA TTGCTGCAACTGCGGTGTAACTGCCGTAACCGCTGCAGGTGTGCGCGTCG GCGGGCGTGAAGATCAGCTACAACTGCCAGAAGGGGGACTGCGGCACATG CGAGGCGCTGGGAGACGGCAAGAAAATACGCGTCTGCCAGACCATTGTGC CTCTGAACGCCAAGTCATTCACCGTCAAGACCAAAAAGTACTAG
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Coding sequence (CDS) from alignment at Contig_53:300368..301761+

>mRNA_8165 ID=mRNA_8165|Name=jgi.p|Trimin1|167707|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=306bp|location=Sequence derived from alignment at Contig_53:300368..301761+ (Tribonema minus UTEX_B_3156 )
ATGGGTTTCGGCGACGCCTTCAAAAATGCATTCAGCAACGAGGAGTTCGG
GGCCAAGCAGAATGCTGGTCTCAAAAATGGGCCCAAGTACGTGGACGTAA
TCATAGACGGCAAGAAGGTGCAGGCGGTGGCGGGGCAGCGGTTATCGCAG
GTGTGCGCGTCGGCGGGCGTGAAGATCAGCTACAACTGCCAGAAGGGGGA
CTGCGGCACATGCGAGGCGCTGGGAGACGGCAAGAAAATACGCGTCTGCC
AGACCATTGTGCCTCTGAACGCCAAGTCATTCACCGTCAAGACCAAAAAG
TACTAG
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