Trimin1|349944|estExt_Genemark1.C_Ctg_520028 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|349944
Unique NameTrimin1|349944|estExt_Genemark1.C_Ctg_520028
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length379
Homology
BLAST of jgi.p|Trimin1|349944 vs. uniprot
Match: A0A835YYC3_9STRA (S1 motif domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYC3_9STRA)

HSP 1 Score: 597 bits (1538), Expect = 7.070e-213
Identity = 378/378 (100.00%), Postives = 378/378 (100.00%), Query Frame = 0
Query:    1 MVRRGALVAVAVAASCCGPCARAFVQPALRCSGSSSLRRGVRRPLAATLVLQQTDDSLAERSSLEAAEPAAEEGXXXXXQDAAHQGEGRVLVPLSELKTGQRLIGSVVDVSPYAAFLDCGVSRSXXXXXXXXXXXXXXXXXXXXXXRGAGGKLCPCHGFLHRSDINRAAXXXXXXXXXXXXXXXXXXXDTGAAALKKGSHVSVYVKDVFPNSGRFTVTLDPAITRKKAPPRSFMNGIVALDSAFTREKVSFMRQKKREATTIARRSRRDATSTDPSEFKDGDEVVGVINKVTEKGLLVDVKTVSLLKMPIGAIRQARGGEFIENLRDLAQPGQSVRGRVVSAADKDGQAKLRLEFVDFVDDDGXXXXXXXESAGDGEA 378
            MVRRGALVAVAVAASCCGPCARAFVQPALRCSGSSSLRRGVRRPLAATLVLQQTDDSLAERSSLEAAEPAAEEGXXXXXQDAAHQGEGRVLVPLSELKTGQRLIGSVVDVSPYAAFLDCGVSRSXXXXXXXXXXXXXXXXXXXXXXRGAGGKLCPCHGFLHRSDINRAAXXXXXXXXXXXXXXXXXXXDTGAAALKKGSHVSVYVKDVFPNSGRFTVTLDPAITRKKAPPRSFMNGIVALDSAFTREKVSFMRQKKREATTIARRSRRDATSTDPSEFKDGDEVVGVINKVTEKGLLVDVKTVSLLKMPIGAIRQARGGEFIENLRDLAQPGQSVRGRVVSAADKDGQAKLRLEFVDFVDDDGXXXXXXXESAGDGEA
Sbjct:    1 MVRRGALVAVAVAASCCGPCARAFVQPALRCSGSSSLRRGVRRPLAATLVLQQTDDSLAERSSLEAAEPAAEEGXXXXXQDAAHQGEGRVLVPLSELKTGQRLIGSVVDVSPYAAFLDCGVSRSXXXXXXXXXXXXXXXXXXXXXXRGAGGKLCPCHGFLHRSDINRAAXXXXXXXXXXXXXXXXXXXDTGAAALKKGSHVSVYVKDVFPNSGRFTVTLDPAITRKKAPPRSFMNGIVALDSAFTREKVSFMRQKKREATTIARRSRRDATSTDPSEFKDGDEVVGVINKVTEKGLLVDVKTVSLLKMPIGAIRQARGGEFIENLRDLAQPGQSVRGRVVSAADKDGQAKLRLEFVDFVDDDGXXXXXXXESAGDGEA 378          
BLAST of jgi.p|Trimin1|349944 vs. uniprot
Match: D7FJQ8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJQ8_ECTSI)

HSP 1 Score: 94.0 bits (232), Expect = 1.300e-17
Identity = 80/268 (29.85%), Postives = 115/268 (42.91%), Query Frame = 0
Query:   94 LSELKTGQRLIGSVVDVSPYAAFLDCGVSRSXXXXXXXXXXXXXXXXXXXXXXRGAGGKLCPCHGFLHRSDINRAAXXXXXXXXXXXXXXXXXXXDTGAAALKKGSHVSVYVKDVFPNSGRFTVTLDPAITRKKAPPRSFMNGIVALDSAFTREKVSFMRQKKREATTIARRSRRDATSTDPSEFKDGDEVVGVINKVTEKGLLVDVKTVSLLKMPIGAIRQARGGEFIENLRDLAQPGQSVRGRV--VSAADKDGQAKLRLEFVDFV 359
            + ELKTG ++IG V D + +AAF+DC V R                       +G+  K+ P  GFLH +DI R                           +KKG H++ YVKDVFPN+GR T++LDP I +                     +KV  +R  KR+ +   R SRR+           GD V G + +V E  LLVDV    L  +    IR +  G+   NL +  +PG  +  R+  +  + + G AK     +DFV
Sbjct:  121 IKELKTGDKVIGYVADTTNFAAFVDCSVVR-----------------------QGSKNKIVPVTGFLHLTDIKRPYALEGTPGVKDCE-----------VEVKKGIHLTAYVKDVFPNAGRMTLSLDPNINK---------------------DKVLKLRDSKRQRS---RNSRRERLHKKGRRHAVGDIVEGYVREVHESMLLVDVMFAQLSVLRASNIRNSEEGQKFVNLSNKTKPGDLITVRIEDIETSKRRG-AKDDKATIDFV 329          
BLAST of jgi.p|Trimin1|349944 vs. uniprot
Match: W7TQN5_9STRA (Nucleic acid-binding protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TQN5_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 7.540e-12
Identity = 50/134 (37.31%), Postives = 62/134 (46.27%), Query Frame = 0
Query:   94 LSELKTGQRLIGSVVDVSPYAAFLDCGVSRSXXXXXXXXXXXXXXXXXXXXXXRGAGGKLCPCHGFLHRSDINRAAXXXXXXXXXXXXXXXXXXXDTGAAALKKGSHVSVYVKDVFPNSGRFTVTLDPAITRKK 227
            L  L+ G RL G VV V+ +AAFLD  V R                        G GGKL  C+  LH  D+                       +T    +++G HVSVYVKDVFPNSGRF+VTLDP+I + K
Sbjct:  105 LQALRPGMRLHGGVVGVTEFAAFLDVKVVRE-----------------------GPGGKLVRCNAMLHPHDVPEGIKLLRDSHNQPLPL------ETDPNVIRRGIHVSVYVKDVFPNSGRFSVTLDPSIDKAK 209          
BLAST of jgi.p|Trimin1|349944 vs. uniprot
Match: K8Z3D9_NANGC (UV excision repair protein RAD23 (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8Z3D9_NANGC)

HSP 1 Score: 76.3 bits (186), Expect = 2.140e-11
Identity = 50/134 (37.31%), Postives = 62/134 (46.27%), Query Frame = 0
Query:   94 LSELKTGQRLIGSVVDVSPYAAFLDCGVSRSXXXXXXXXXXXXXXXXXXXXXXRGAGGKLCPCHGFLHRSDINRAAXXXXXXXXXXXXXXXXXXXDTGAAALKKGSHVSVYVKDVFPNSGRFTVTLDPAITRKK 227
            L  L+ G RL G VV V+ +AAFLD  V R                        G GGKL  C+  LH  D+                       +T    +++G HVSVYVKDVFPNSGRF+VTLDP+I + K
Sbjct:  105 LQALRPGMRLHGGVVGVTEFAAFLDVKVVRE-----------------------GPGGKLVRCNAMLHPHDVPEGIKLLRDSHNQPLPL------ETDPNVIRRGIHVSVYVKDVFPNSGRFSVTLDPSIDKAK 209          
BLAST of jgi.p|Trimin1|349944 vs. uniprot
Match: A0A7S3M9U3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M9U3_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 4.600e-9
Identity = 60/207 (28.99%), Postives = 85/207 (41.06%), Query Frame = 0
Query:   94 LSELKTGQRLIGSVVDVSPYAAFLDCGVSRSXXXXXXXXXXXXXXXXXXXXXXRGAGGKLCPCHGFLHRSDINRAAXXXXXXXXXXXXXXXXXXXDTGAAALKKGSHVSVYVKDVFPNSGRFTVTLDPAITRKKAPPRSFMNGIVALDSAFTREKVSFMRQKKREATTIARRSRRDATSTDPSEFKDGDEVVGVINKVTEKGLLVDV 300
            LS LKTG +L G VV  +PYAAF+D GV R                          GG   P H  LH+SDI +                        +  L K + +SV+VK+V   +GRFTVT D  +T+            ++L     RE+ S  R+        +RR RR      P     G    G+++KV ++G+LV +
Sbjct:    6 LSTLKTGMKLDGYVVSSTPYAAFIDAGVVRVSK-----------------------GGSFAPVHAMLHKSDIPKEVLNSLRKGQHQFPSPIPGP----SPLLPKNTPLSVFVKEVTKQTGRFTVTTDSTVTKAD----------LSLAHNQVREEASERRR--------SRRLRRQLEDITP-----GTTAEGLVDKVVDEGVLVTI 162          
BLAST of jgi.p|Trimin1|349944 vs. uniprot
Match: A0A7S2UWN5_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UWN5_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 1.750e-5
Identity = 41/137 (29.93%), Postives = 55/137 (40.15%), Query Frame = 0
Query:   91 LVPLSELKTGQRLIGSVVDVSPYAAFLDCGVSRSXXXXXXXXXXXXXXXXXXXXXXRGAGGKLCPCHGFLHRSDINRAAXXXXXXXXXXXXXXXXXXXDTGAAALKKGSHVSVYVKDVFPNSGRFTVTLDPAITRKK 227
            +V L  LKTG    G V  V+ +  FL+CG+ R                        G  G +    G LH++D+  +                          L+KG  V  YVK VFP SGRF++T+DP ITR K
Sbjct:  138 MVWLKTLKTGMPFYGGVKSVTNFGVFLECGIVRP-----------------------GRKGTVTRVQGMLHKTDLAPSMKVPFQYRPK------------ATKVLEKGMTVKCYVKAVFPQSGRFSLTMDPTITRAK 239          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|349944 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A835YYC3_9STRA7.070e-213100.00S1 motif domain-containing protein n=1 Tax=Tribone... [more]
D7FJQ8_ECTSI1.300e-1729.85Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
W7TQN5_9STRA7.540e-1237.31Nucleic acid-binding protein n=2 Tax=Monodopsidace... [more]
K8Z3D9_NANGC2.140e-1137.31UV excision repair protein RAD23 (Fragment) n=1 Ta... [more]
A0A7S3M9U3_9STRA4.600e-928.99Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A7S2UWN5_9STRA1.750e-529.93Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR022967RNA-binding domain, S1SMARTSM00316S1_6coord: 121..220
e-value: 4.8
score: 11.5
coord: 279..354
e-value: 0.0026
score: 27.0
IPR012340Nucleic acid-binding, OB-foldGENE3D2.40.50.140coord: 90..221
e-value: 5.8E-6
score: 28.1
IPR012340Nucleic acid-binding, OB-foldGENE3D2.40.50.140coord: 265..357
e-value: 2.2E-6
score: 29.4
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 277..353
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 61..85
NoneNo IPR availablePROSITEPS51257PROKAR_LIPOPROTEINcoord: 1..16
score: 6.0
IPR003029S1 domainPROSITEPS50126S1coord: 281..354
score: 11.134192

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_52contigContig_52:237016..242967 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|349944mRNA_9928Tribonema minus UTEX_B_3156 mRNAContig_52 237016..242967 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|349944|estExt_Genemark1.C_Ctg_520028 ID=Trimin1|349944|estExt_Genemark1.C_Ctg_520028|Name=jgi.p|Trimin1|349944|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=379bp
MVRRGALVAVAVAASCCGPCARAFVQPALRCSGSSSLRRGVRRPLAATLV
LQQTDDSLAERSSLEAAEPAAEEGEQQQQQDAAHQGEGRVLVPLSELKTG
QRLIGSVVDVSPYAAFLDCGVSRSRLIGSVVDVSPYAAFLDCGVSRRGAG
GKLCPCHGFLHRSDINRAAKLCPCHGFLHRSDINRAAKDTGAAALKKGSH
VSVYVKDVFPNSGRFTVTLDPAITRKKAPPRSFMNGIVALDSAFTREKVS
FMRQKKREATTIARRSRRDATSTDPSEFKDGDEVVGVINKVTEKGLLVDV
KTVSLLKMPIGAIRQARGGEFIENLRDLAQPGQSVRGRVVSAADKDGQAK
LRLEFVDFVDDDGSSSSSSSESAGDGEA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR022967S1_dom
IPR012340NA-bd_OB-fold
IPR003029S1_domain