mRNA_9908 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|349932
Unique NamemRNA_9908
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|349932 vs. uniprot
Match: A0A836CBG3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBG3_9STRA)

HSP 1 Score: 214 bits (544), Expect = 5.680e-66
Identity = 118/129 (91.47%), Postives = 119/129 (92.25%), Query Frame = 1 
Query:    1 MGARILLGFAMALATAYSCTTEVWQAGGVKKCVDPCDYSNVIWDRHGNAMCLQYQLTTGGQQICPWSNIAYDAAGTPLCMVSQNNKEXXXXXXXXXXXXXXXXXVSTGDGFSCPAERIKYNDAHDLYCA 387
            MGARILLGFAMALATAYSCTTEVWQAGGVKKCVDPCDYSNVIWDRHGNAMCLQYQLTTGGQQICPW         TPLCMVSQNNKEXXXXXXXXXXXXXXXXXVSTGDGFSCPAERI+YNDAHD YCA
Sbjct:    2 MGARILLGFAMALATAYSCTTEVWQAGGVKKCVDPCDYSNVIWDRHGNAMCLQYQLTTGGQQICPWXXXXXXXXXTPLCMVSQNNKEXXXXXXXXXXXXXXXXXVSTGDGFSCPAERIRYNDAHDPYCA 130
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BLAST of jgi.p|Trimin1|349932 vs. uniprot
Match: A0A835YPY2_9STRA (Uncharacterized protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPY2_9STRA)

HSP 1 Score: 209 bits (532), Expect = 4.400e-65
Identity = 116/129 (89.92%), Postives = 117/129 (90.70%), Query Frame = 1 
Query:    1 MGARILLGFAMALATAYSCTTEVWQAGGVKKCVDPCDYSNVIWDRHGNAMCLQYQLTTGGQQICPWSNIAYDAAGTPLCMVSQNNKEXXXXXXXXXXXXXXXXXVSTGDGFSCPAERIKYNDAHDLYCA 387
            M ARILLGFAMAL TAYSCTTEVWQAGGVKKCVDPCDYSNVIWDRHGNAMCLQYQLTTGGQQICPW         TPLCMVSQNNKEXXXXXXXXXXXXXXXXXVSTGDGFSCPAERI+YNDAHD YCA
Sbjct:    2 MEARILLGFAMALTTAYSCTTEVWQAGGVKKCVDPCDYSNVIWDRHGNAMCLQYQLTTGGQQICPWXXXXXXXXXTPLCMVSQNNKEXXXXXXXXXXXXXXXXXVSTGDGFSCPAERIRYNDAHDPYCA 130
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BLAST of jgi.p|Trimin1|349932 vs. uniprot
Match: A0A835Z920_9STRA (Uncharacterized protein n=4 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z920_9STRA)

HSP 1 Score: 204 bits (518), Expect = 5.780e-63
Identity = 111/129 (86.05%), Postives = 119/129 (92.25%), Query Frame = 1 
Query:    1 MGARILLGFAMALATAYSCTTEVWQAGGVKKCVDPCDYSNVIWDRHGNAMCLQYQLTTGGQQICPWSNIAYDAAGTPLCMVSQNNKEXXXXXXXXXXXXXXXXXVSTGDGFSCPAERIKYNDAHDLYCA 387
            MGARIL+  AMAL TAYSCTTEVWQAGGVKKCVDPC+YSNV+WDRHGNAMCLQYQLTTGGQQICPWSNIAYDA GTP+CM+SQNN  XXXXXXXXXXXXXXXXXVST +GFSCPAERIKYN + D YC+
Sbjct:    2 MGARILICLAMALTTAYSCTTEVWQAGGVKKCVDPCNYSNVVWDRHGNAMCLQYQLTTGGQQICPWSNIAYDADGTPVCMISQNNXXXXXXXXXXXXXXXXXXXVSTSEGFSCPAERIKYNGSLDPYCS 130
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BLAST of jgi.p|Trimin1|349932 vs. uniprot
Match: A0A835YJX7_9STRA (Uncharacterized protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJX7_9STRA)

HSP 1 Score: 190 bits (483), Expect = 6.210e-57
Identity = 109/118 (92.37%), Postives = 111/118 (94.07%), Query Frame = 1 
Query:    1 MGARILLGFAMALATAYSCTTEVWQAGGVKKCVDPCDYSNVIWDRHGNAMCLQYQLTTGGQQICPWSNIAYDAAGTPLCMVSQNNKEXXXXXXXXXXXXXXXXXVSTGDGFSCPAERI 354
            MGARILLGFAMAL TAYSCTTEV QAGGVKKCV PCDYSNVIWDRHG A+CLQYQLTTGGQQICPWSNIAY A GTPLCMVSQNN+ XXXXXXXXXXXXXXXXXVSTGDGFSCPAERI
Sbjct:    1 MGARILLGFAMALTTAYSCTTEVSQAGGVKKCVAPCDYSNVIWDRHGTALCLQYQLTTGGQQICPWSNIAYGADGTPLCMVSQNNQXXXXXXXXXXXXXXXXXXVSTGDGFSCPAERI 118
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|349932 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A836CBG3_9STRA5.680e-6691.47Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YPY2_9STRA4.400e-6589.92Uncharacterized protein n=2 Tax=Tribonema minus Ta... [more]
A0A835Z920_9STRA5.780e-6386.05Uncharacterized protein n=4 Tax=Tribonema minus Ta... [more]
A0A835YJX7_9STRA6.210e-5792.37Uncharacterized protein n=2 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_52contigContig_52:38656..40388 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|349932|estExt_Genemark1.C_Ctg_520006
Hectar predicted targeting categorysignal peptide
TranscriptId350254
TrackFilteredModels1
ProteinId349932
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|349932gene_9908Tribonema minus UTEX_B_3156 geneContig_52 38656..40388 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_9908_1exon_9908_1Tribonema minus UTEX_B_3156 exonContig_52 38656..38794 +
exon_9908_2exon_9908_2Tribonema minus UTEX_B_3156 exonContig_52 39055..39106 +
exon_9908_3exon_9908_3Tribonema minus UTEX_B_3156 exonContig_52 39685..40388 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_9908CDS_9908Tribonema minus UTEX_B_3156 CDSContig_52 38656..38794 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_9908UTR3_9908Tribonema minus UTEX_B_3156 three_prime_UTRContig_52 39884..40388 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|349932Trimin1|349932|estExt_Genemark1.C_Ctg_520006Tribonema minus UTEX_B_3156 polypeptideContig_52 38656..39883 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_9908 ID=mRNA_9908|Name=jgi.p|Trimin1|349932|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=895bp|location=Sequence derived from alignment at Contig_52:38656..40388+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGGAGCACGCATCCTGCTCGGTTTCGCCATGGCCCTAGCCACCGCGTA
CAGCTGCACGACAGAGGTGTGGCAGGCCGGTGGCGTGAAGAAATGCGTTG
ACCCCTGCGACTACAGCAATGTCATATGGGACAGGCACGGCAACGCCATG
TGCCTGCAGTACCAGCTGACAACAGGCGGTCAACAGATCTGCCCGTGGTC
CAACATCGCGTACGACGCCGCCGGTACGCCGCTGTGCATGGTCTCACAGA
ACAATAAGGAGCTGTGCAAGACGTCCAGCATCGCCTACGACCATGCGCAC
CGGCCCGTGTGCGTGTCCACAGGCGACGGCTTCAGCTGCCCTGCCGAGAG
GATCAAGTACAACGACGCGCACGACCTTTACTGCGCCTGAGCGTGCCGCA
CGGCGGCGGCGACGCGCTTATGGGTGCCGCAAGCAATGGTGGCTTGCTTT
GCGCCCCGTGGCCACTGTTGCAGCGACTCTGTGCCCGCCTTCTGCGTTCC
GACTGCAGTACTGTGAGCTCAAACAAGCCTGGGCCTTCCGCACGGAGCGT
CTGTGCAGTTCCGCTGTGTGTAATTGCTCAGCACATGCACACTGTAGTAG
TGGCCTCTAGTAGTTGCAATGATAGAAGTAGCGTGCTAGTGAGATGTCAA
GTCACAATGGCAGAAGTTGCCTGAGAGGTGTGTGTTTTGCTGTAGAGTGC
TGTGCCGCTGTGTGACACCAGCGGGCAACAGCCATGGCTTTGTGATGAGG
TTGGGCTGGCAGAGCACAAACTGTACAGTGAACACGCGAGAGTCGCGAAG
CCGCCACCTGTTCCATGTGAAGGGGACACTGTGTGTGCCATCTTGTTGGC
CGCTTTGTGAGCATTGATGAATGACAACCATTCCATATGAACTGA
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protein sequence of jgi.p|Trimin1|349932

>Trimin1|349932|estExt_Genemark1.C_Ctg_520006 ID=Trimin1|349932|estExt_Genemark1.C_Ctg_520006|Name=jgi.p|Trimin1|349932|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=130bp
MGARILLGFAMALATAYSCTTEVWQAGGVKKCVDPCDYSNVIWDRHGNAM
CLQYQLTTGGQQICPWSNIAYDAAGTPLCMVSQNNKELCKTSSIAYDHAH
RPVCVSTGDGFSCPAERIKYNDAHDLYCA*
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mRNA from alignment at Contig_52:38656..40388+

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9908 ID=mRNA_9908|Name=jgi.p|Trimin1|349932|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1733bp|location=Sequence derived from alignment at Contig_52:38656..40388+ (Tribonema minus UTEX_B_3156 )
ATGGGAGCACGCATCCTGCTCGGTTTCGCCATGGCCCTAGCCACCGCGTA
CAGCTGCACGACAGAGGTGTGGCAGGCCGGTGGCGTGAAGAAATGCGTTG
ACCCCTGCGACTACAGCAATGTCATATGGGACAGGCACGGTGAGTGCAGT
GCAATCTTCGACACTTGAATCGGCCACGACAGGCCAGCGCTTTGCGTGCA
GGCCTGGTGTTAACCGCGTGAAAGCATTGGTGAACCAACGCTACTGCTGT
ACGAACGAGACCTCGCACTAAGCTGCGCACCACTAGTAGATTAGGTGGCT
CAGCAGTGTTTGCGCTTGGCTCCCCGCGGGACTACACTGCAACAGCAAGC
CGGCTCGAGCTCATGCTTTCCATCTGCCGCCGTCTGCTGCCTGCCACAGG
CAACGCCATGTGCCTGCAGTACCAGCTGACAACAGGCGGTCAACAGATCT
GGTGAGGCGCATCTTTGCCGATAGCAATTGCTGCTTGCATTTGTAGCATT
GAAGAAAGATGCTCGCTGCATGCATGTACCGTGGTAAGCTTTCAGGGTAC
CTATTGAATGTTGAAGCTTGGTTTCGTCAAGAGATGATCTGCATGAGCTT
CAAACCACCAAGGAGGCGCTCCACCAAATCATGCCTGAATACATTTTAAT
GCCTGTGATCATTCATGTAGTAAGCTCTTAAATTGAGTCGCAGTCCTCCA
GTACTTGAGCTCTACTGTAGGCATGTCAAGGAAGCCTTCGCAGATCTACT
AGTATACACATGGCGTGCTCAGTGGGTGTGCAACAGGCGGCCTACTCTTT
TGTGTAAAGGTCTTCAAAGCACTGACAGCTGCTTGGCCCCGTGTGCTCCA
GATGTAATGCTCTAGCTCTTGCACACGCCATTCCGCGCATACATGAAGGC
CATGCATCATTGTTGTTTCAGCGCAGTGAGCCGCATCGCATGTCTGCATT
GGCTTGCAGTGCCAGGCCTCAGCACTGCTGCCCAGAGCCGCTCTAACGCC
GCTGTGACGCCGCTTCCGCCGCCCTGCAGCCCGTGGTCCAACATCGCGTA
CGACGCCGCCGGTACGCCGCTGTGCATGGTCTCACAGAACAATAAGGAGC
TGTGCAAGACGTCCAGCATCGCCTACGACCATGCGCACCGGCCCGTGTGC
GTGTCCACAGGCGACGGCTTCAGCTGCCCTGCCGAGAGGATCAAGTACAA
CGACGCGCACGACCTTTACTGCGCCTGAGCGTGCCGCACGGCGGCGGCGA
CGCGCTTATGGGTGCCGCAAGCAATGGTGGCTTGCTTTGCGCCCCGTGGC
CACTGTTGCAGCGACTCTGTGCCCGCCTTCTGCGTTCCGACTGCAGTACT
GTGAGCTCAAACAAGCCTGGGCCTTCCGCACGGAGCGTCTGTGCAGTTCC
GCTGTGTGTAATTGCTCAGCACATGCACACTGTAGTAGTGGCCTCTAGTA
GTTGCAATGATAGAAGTAGCGTGCTAGTGAGATGTCAAGTCACAATGGCA
GAAGTTGCCTGAGAGGTGTGTGTTTTGCTGTAGAGTGCTGTGCCGCTGTG
TGACACCAGCGGGCAACAGCCATGGCTTTGTGATGAGGTTGGGCTGGCAG
AGCACAAACTGTACAGTGAACACGCGAGAGTCGCGAAGCCGCCACCTGTT
CCATGTGAAGGGGACACTGTGTGTGCCATCTTGTTGGCCGCTTTGTGAGC
ATTGATGAATGACAACCATTCCATATGAACTGA
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Coding sequence (CDS) from alignment at Contig_52:38656..40388+

>mRNA_9908 ID=mRNA_9908|Name=jgi.p|Trimin1|349932|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=390bp|location=Sequence derived from alignment at Contig_52:38656..40388+ (Tribonema minus UTEX_B_3156 )
ATGGGAGCACGCATCCTGCTCGGTTTCGCCATGGCCCTAGCCACCGCGTA
CAGCTGCACGACAGAGGTGTGGCAGGCCGGTGGCGTGAAGAAATGCGTTG
ACCCCTGCGACTACAGCAATGTCATATGGGACAGGCACGGCAACGCCATG
TGCCTGCAGTACCAGCTGACAACAGGCGGTCAACAGATCTGCCCGTGGTC
CAACATCGCGTACGACGCCGCCGGTACGCCGCTGTGCATGGTCTCACAGA
ACAATAAGGAGCTGTGCAAGACGTCCAGCATCGCCTACGACCATGCGCAC
CGGCCCGTGTGCGTGTCCACAGGCGACGGCTTCAGCTGCCCTGCCGAGAG
GATCAAGTACAACGACGCGCACGACCTTTACTGCGCCTGA
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