Trimin1|349899|estExt_Genemark1.C_Ctg_510046 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|349899
Unique NameTrimin1|349899|estExt_Genemark1.C_Ctg_510046
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length94
Homology
BLAST of jgi.p|Trimin1|349899 vs. uniprot
Match: A0A836CC04_9STRA (Dynein light chain n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CC04_9STRA)

HSP 1 Score: 196 bits (497), Expect = 1.410e-63
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 0
Query:    1 MANKHQHIFAEDMTDDMCQFALKTSEEAFHLTINKGQVFTAIASYIRRTFEKTYGRGWNVVVGRAFGAYVTHEIKTYMYFTVIPGVYVLIWKA 93
            MANKHQHIFAEDMTDDMCQFALKTSEEAFHLTINKGQVFTAIASYIRRTFEKTYGRGWNVVVGRAFGAYVTHEIKTYMYFTVIPGVYVLIWKA
Sbjct:    1 MANKHQHIFAEDMTDDMCQFALKTSEEAFHLTINKGQVFTAIASYIRRTFEKTYGRGWNVVVGRAFGAYVTHEIKTYMYFTVIPGVYVLIWKA 93          
BLAST of jgi.p|Trimin1|349899 vs. uniprot
Match: D7FQ30_ECTSI (Dynein light chain n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ30_ECTSI)

HSP 1 Score: 168 bits (426), Expect = 4.350e-52
Identity = 76/92 (82.61%), Postives = 87/92 (94.57%), Query Frame = 0
Query:    1 MANKHQHIFAEDMTDDMCQFALKTSEEAFHLTINKGQVFTAIASYIRRTFEKTYGRGWNVVVGRAFGAYVTHEIKTYMYFTVIPGVYVLIWK 92
            M+NKHQHIFAEDM+D+MCQFAL+TS+EAF LTI KGQVFT IAS IR+ FEK+YGRGWNVVVGR+FGAYVTHEIKTYMYFTV+PGVYVL+W+
Sbjct:    1 MSNKHQHIFAEDMSDEMCQFALETSQEAFQLTITKGQVFTTIASCIRKAFEKSYGRGWNVVVGRSFGAYVTHEIKTYMYFTVVPGVYVLLWR 92          
BLAST of jgi.p|Trimin1|349899 vs. uniprot
Match: A0A6H5JF01_9PHAE (Dynein light chain n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF01_9PHAE)

HSP 1 Score: 166 bits (421), Expect = 8.100e-52
Identity = 75/92 (81.52%), Postives = 86/92 (93.48%), Query Frame = 0
Query:    1 MANKHQHIFAEDMTDDMCQFALKTSEEAFHLTINKGQVFTAIASYIRRTFEKTYGRGWNVVVGRAFGAYVTHEIKTYMYFTVIPGVYVLIWK 92
            M+NKHQHIFAEDM+D+MC FAL+TS+EAF LTI KGQVFT IAS IR+ FEK+YGRGWNVVVGR+FGAYVTHEIKTYMYFTV+PGVYVL+W+
Sbjct:    1 MSNKHQHIFAEDMSDEMCHFALETSQEAFQLTITKGQVFTTIASCIRKAFEKSYGRGWNVVVGRSFGAYVTHEIKTYMYFTVVPGVYVLLWR 92          
BLAST of jgi.p|Trimin1|349899 vs. uniprot
Match: A0A482S6R4_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S6R4_9ARCH)

HSP 1 Score: 113 bits (282), Expect = 2.480e-30
Identity = 49/86 (56.98%), Postives = 68/86 (79.07%), Query Frame = 0
Query:    8 IFAEDMTDDMCQFALKTSEEAFHLTINKGQVFTAIASYIRRTFEKTYGRGWNVVVGRAFGAYVTHEIKTYMYFTVIPGVYVLIWKA 93
            +FAEDM+++  + A+K + +AF LTI  G V + IA +IR+ F++ + RGWN +VGR+FGAYVTHEIKTY+YFTV PG YVL+WK+
Sbjct:   44 VFAEDMSEEWSKDAIKAARDAFALTIASGDVHSTIADFIRKKFDRDHERGWNCIVGRSFGAYVTHEIKTYIYFTVQPGTYVLLWKS 129          
BLAST of jgi.p|Trimin1|349899 vs. uniprot
Match: A0A485KYL8_9STRA (Dynein light chain n=8 Tax=Saprolegniaceae TaxID=4764 RepID=A0A485KYL8_9STRA)

HSP 1 Score: 111 bits (277), Expect = 5.800e-30
Identity = 48/86 (55.81%), Postives = 65/86 (75.58%), Query Frame = 0
Query:    8 IFAEDMTDDMCQFALKTSEEAFHLTINKGQVFTAIASYIRRTFEKTYGRGWNVVVGRAFGAYVTHEIKTYMYFTVIPGVYVLIWKA 93
            +FAEDMTD M +  + T+++AF L +  G+ F+ IA ++RR  EK YGRGWN +VG +FGAYVTHEIKTY+YF+V  GV VL+W+ 
Sbjct:   13 VFAEDMTDVMLEKVVATAKDAFQLQVASGKTFSTIAEFVRRNMEKEYGRGWNCIVGLSFGAYVTHEIKTYVYFSVASGVSVLVWRT 98          
BLAST of jgi.p|Trimin1|349899 vs. uniprot
Match: A0A0P1AY91_PLAHL (Dynein light chain n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AY91_PLAHL)

HSP 1 Score: 111 bits (277), Expect = 5.970e-30
Identity = 50/86 (58.14%), Postives = 63/86 (73.26%), Query Frame = 0
Query:    8 IFAEDMTDDMCQFALKTSEEAFHLTINKGQVFTAIASYIRRTFEKTYGRGWNVVVGRAFGAYVTHEIKTYMYFTVIPGVYVLIWKA 93
            +FAEDMTD M    L T+++AF L +   + F+ IA ++RR  EK YGRGWN VVG +FGAYVTHEIKTY+YF+V  GV VL+WK 
Sbjct:   14 VFAEDMTDAMLDKVLSTAKDAFQLQVTSEKTFSTIAEFVRRNMEKEYGRGWNCVVGSSFGAYVTHEIKTYVYFSVAIGVSVLVWKT 99          
BLAST of jgi.p|Trimin1|349899 vs. uniprot
Match: A0A7S4E7C9_9STRA (Dynein light chain n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4E7C9_9STRA)

HSP 1 Score: 110 bits (274), Expect = 2.640e-29
Identity = 48/93 (51.61%), Postives = 70/93 (75.27%), Query Frame = 0
Query:    1 MANKHQHIFAEDMTDDMCQFALKTSEEAFHLTINKGQVFTAIASYIRRTFEKTYGRGWNVVVGRAFGAYVTHEIKTYMYFTVIPGVYVLIWKA 93
            MA   Q +FAEDM+++   F L+ + +AF+    +G+V++ +A++IR   EK YG+GWNVVVG++FGA+VTHEIKTY Y +V+PGV VLIW+ 
Sbjct:    1 MAKATQQVFAEDMSEEKVDFCLEIATDAFNQASFQGKVYSYVANFIRAALEKQYGKGWNVVVGKSFGAFVTHEIKTYFYGSVVPGVCVLIWRC 93          
BLAST of jgi.p|Trimin1|349899 vs. uniprot
Match: A0A225VFG7_9STRA (Dynein light chain n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225VFG7_9STRA)

HSP 1 Score: 113 bits (283), Expect = 3.730e-28
Identity = 51/86 (59.30%), Postives = 64/86 (74.42%), Query Frame = 0
Query:    8 IFAEDMTDDMCQFALKTSEEAFHLTINKGQVFTAIASYIRRTFEKTYGRGWNVVVGRAFGAYVTHEIKTYMYFTVIPGVYVLIWKA 93
            +FAEDMTD M + AL T+ +AF L +   + F+ IA ++RR  EK YGRGWN VVG +FGAYVTHEIKTY+YF+V  GV VL+WK 
Sbjct:   14 VFAEDMTDVMLEKALSTARDAFQLQVTSEKTFSTIAEFVRRNMEKEYGRGWNCVVGSSFGAYVTHEIKTYVYFSVAAGVSVLVWKT 99          
BLAST of jgi.p|Trimin1|349899 vs. uniprot
Match: F0W814_9STRA (Dynein light chain n=3 Tax=Albugo TaxID=65356 RepID=F0W814_9STRA)

HSP 1 Score: 105 bits (263), Expect = 7.400e-28
Identity = 47/86 (54.65%), Postives = 63/86 (73.26%), Query Frame = 0
Query:    8 IFAEDMTDDMCQFALKTSEEAFHLTINKGQVFTAIASYIRRTFEKTYGRGWNVVVGRAFGAYVTHEIKTYMYFTVIPGVYVLIWKA 93
            ++AEDMT+ M       +++AF L I  G+ F++IA +IRR  EK YGRGWN VVG +FGA+VTHEIKTY+YF+V  GV +L+WK 
Sbjct:   11 VYAEDMTEPMLDKVTTLAKDAFQLQITAGKTFSSIADFIRRNMEKEYGRGWNCVVGNSFGAFVTHEIKTYVYFSVTFGVSILLWKT 96          
BLAST of jgi.p|Trimin1|349899 vs. uniprot
Match: H3HCG0_PHYRM (Dynein light chain n=21 Tax=Oomycota TaxID=4762 RepID=H3HCG0_PHYRM)

HSP 1 Score: 105 bits (262), Expect = 1.020e-27
Identity = 49/82 (59.76%), Postives = 61/82 (74.39%), Query Frame = 0
Query:    8 IFAEDMTDDMCQFALKTSEEAFHLTINKGQVFTAIASYIRRTFEKTYGRGWNVVVGRAFGAYVTHEIKTYMYFTVIPGVYVL 89
            +FAEDMTD M + AL T+ +AF L +   + F+ IA ++RR  EK YGRGWN VVG +FGAYVTHEIKTY+YF+V  GV VL
Sbjct:   14 VFAEDMTDAMLEKALGTARDAFQLQVTSEKTFSTIAEFVRRNMEKEYGRGWNCVVGSSFGAYVTHEIKTYVYFSVAAGVSVL 95          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|349899 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CC04_9STRA1.410e-63100.00Dynein light chain n=1 Tax=Tribonema minus TaxID=3... [more]
D7FQ30_ECTSI4.350e-5282.61Dynein light chain n=1 Tax=Ectocarpus siliculosus ... [more]
A0A6H5JF01_9PHAE8.100e-5281.52Dynein light chain n=1 Tax=Ectocarpus sp. CCAP 131... [more]
A0A482S6R4_9ARCH2.480e-3056.98Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A485KYL8_9STRA5.800e-3055.81Dynein light chain n=8 Tax=Saprolegniaceae TaxID=4... [more]
A0A0P1AY91_PLAHL5.970e-3058.14Dynein light chain n=1 Tax=Plasmopara halstedii Ta... [more]
A0A7S4E7C9_9STRA2.640e-2951.61Dynein light chain n=1 Tax=Pelagomonas calceolata ... [more]
A0A225VFG7_9STRA3.730e-2859.30Dynein light chain n=1 Tax=Phytophthora megakarya ... [more]
F0W814_9STRA7.400e-2854.65Dynein light chain n=3 Tax=Albugo TaxID=65356 RepI... [more]
H3HCG0_PHYRM1.020e-2759.76Dynein light chain n=21 Tax=Oomycota TaxID=4762 Re... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001372Dynein light chain, type 1/2SMARTSM01375Dynein_light_2coord: 1..93
e-value: 1.4E-27
score: 107.7
IPR001372Dynein light chain, type 1/2PFAMPF01221Dynein_lightcoord: 7..92
e-value: 5.5E-24
score: 84.4
IPR001372Dynein light chain, type 1/2PANTHERPTHR11886DYNEIN LIGHT CHAINcoord: 7..90
IPR037177Dynein light chain superfamilyGENE3D3.30.740.10Protein Inhibitor Of Neuronal Nitric Oxide Synthase;coord: 1..93
e-value: 6.6E-23
score: 82.5
IPR037177Dynein light chain superfamilySUPERFAMILY54648DLCcoord: 5..92
NoneNo IPR availablePANTHERPTHR11886:SF64DYNEIN LIGHT CHAINcoord: 7..90

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_51contigContig_51:518028..519373 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|349899mRNA_8805Tribonema minus UTEX_B_3156 mRNAContig_51 518028..519397 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|349899|estExt_Genemark1.C_Ctg_510046 ID=Trimin1|349899|estExt_Genemark1.C_Ctg_510046|Name=jgi.p|Trimin1|349899|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=94bp
MANKHQHIFAEDMTDDMCQFALKTSEEAFHLTINKGQVFTAIASYIRRTF
EKTYGRGWNVVVGRAFGAYVTHEIKTYMYFTVIPGVYVLIWKA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001372Dynein_light_chain_typ-1/2
IPR037177DLC_sf