mRNA_8805 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|349899 vs. uniprot
Match: A0A836CC04_9STRA (Dynein light chain n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CC04_9STRA) HSP 1 Score: 195 bits (495), Expect = 3.990e-63 Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 1 Query: 25 MANKHQHIFAEDMTDDMCQFALKTSEEAFHLTINKGQVFTAIASYIRRTFEKTYGRGWNVVVGRAFGAYVTHEIKTYMYFTVIPGVYVLIWKA 303 MANKHQHIFAEDMTDDMCQFALKTSEEAFHLTINKGQVFTAIASYIRRTFEKTYGRGWNVVVGRAFGAYVTHEIKTYMYFTVIPGVYVLIWKA Sbjct: 1 MANKHQHIFAEDMTDDMCQFALKTSEEAFHLTINKGQVFTAIASYIRRTFEKTYGRGWNVVVGRAFGAYVTHEIKTYMYFTVIPGVYVLIWKA 93
BLAST of jgi.p|Trimin1|349899 vs. uniprot
Match: D7FQ30_ECTSI (Dynein light chain n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ30_ECTSI) HSP 1 Score: 167 bits (424), Expect = 1.220e-51 Identity = 76/92 (82.61%), Postives = 87/92 (94.57%), Query Frame = 1 Query: 25 MANKHQHIFAEDMTDDMCQFALKTSEEAFHLTINKGQVFTAIASYIRRTFEKTYGRGWNVVVGRAFGAYVTHEIKTYMYFTVIPGVYVLIWK 300 M+NKHQHIFAEDM+D+MCQFAL+TS+EAF LTI KGQVFT IAS IR+ FEK+YGRGWNVVVGR+FGAYVTHEIKTYMYFTV+PGVYVL+W+ Sbjct: 1 MSNKHQHIFAEDMSDEMCQFALETSQEAFQLTITKGQVFTTIASCIRKAFEKSYGRGWNVVVGRSFGAYVTHEIKTYMYFTVVPGVYVLLWR 92
BLAST of jgi.p|Trimin1|349899 vs. uniprot
Match: A0A6H5JF01_9PHAE (Dynein light chain n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF01_9PHAE) HSP 1 Score: 166 bits (419), Expect = 2.270e-51 Identity = 75/92 (81.52%), Postives = 86/92 (93.48%), Query Frame = 1 Query: 25 MANKHQHIFAEDMTDDMCQFALKTSEEAFHLTINKGQVFTAIASYIRRTFEKTYGRGWNVVVGRAFGAYVTHEIKTYMYFTVIPGVYVLIWK 300 M+NKHQHIFAEDM+D+MC FAL+TS+EAF LTI KGQVFT IAS IR+ FEK+YGRGWNVVVGR+FGAYVTHEIKTYMYFTV+PGVYVL+W+ Sbjct: 1 MSNKHQHIFAEDMSDEMCHFALETSQEAFQLTITKGQVFTTIASCIRKAFEKSYGRGWNVVVGRSFGAYVTHEIKTYMYFTVVPGVYVLLWR 92
BLAST of jgi.p|Trimin1|349899 vs. uniprot
Match: A0A482S6R4_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S6R4_9ARCH) HSP 1 Score: 112 bits (281), Expect = 4.810e-30 Identity = 49/86 (56.98%), Postives = 68/86 (79.07%), Query Frame = 1 Query: 46 IFAEDMTDDMCQFALKTSEEAFHLTINKGQVFTAIASYIRRTFEKTYGRGWNVVVGRAFGAYVTHEIKTYMYFTVIPGVYVLIWKA 303 +FAEDM+++ + A+K + +AF LTI G V + IA +IR+ F++ + RGWN +VGR+FGAYVTHEIKTY+YFTV PG YVL+WK+ Sbjct: 44 VFAEDMSEEWSKDAIKAARDAFALTIASGDVHSTIADFIRKKFDRDHERGWNCIVGRSFGAYVTHEIKTYIYFTVQPGTYVLLWKS 129
BLAST of jgi.p|Trimin1|349899 vs. uniprot
Match: A0A485KYL8_9STRA (Dynein light chain n=8 Tax=Saprolegniaceae TaxID=4764 RepID=A0A485KYL8_9STRA) HSP 1 Score: 110 bits (276), Expect = 1.130e-29 Identity = 48/86 (55.81%), Postives = 65/86 (75.58%), Query Frame = 1 Query: 46 IFAEDMTDDMCQFALKTSEEAFHLTINKGQVFTAIASYIRRTFEKTYGRGWNVVVGRAFGAYVTHEIKTYMYFTVIPGVYVLIWKA 303 +FAEDMTD M + + T+++AF L + G+ F+ IA ++RR EK YGRGWN +VG +FGAYVTHEIKTY+YF+V GV VL+W+ Sbjct: 13 VFAEDMTDVMLEKVVATAKDAFQLQVASGKTFSTIAEFVRRNMEKEYGRGWNCIVGLSFGAYVTHEIKTYVYFSVASGVSVLVWRT 98
BLAST of jgi.p|Trimin1|349899 vs. uniprot
Match: A0A0P1AY91_PLAHL (Dynein light chain n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AY91_PLAHL) HSP 1 Score: 110 bits (276), Expect = 1.160e-29 Identity = 50/86 (58.14%), Postives = 63/86 (73.26%), Query Frame = 1 Query: 46 IFAEDMTDDMCQFALKTSEEAFHLTINKGQVFTAIASYIRRTFEKTYGRGWNVVVGRAFGAYVTHEIKTYMYFTVIPGVYVLIWKA 303 +FAEDMTD M L T+++AF L + + F+ IA ++RR EK YGRGWN VVG +FGAYVTHEIKTY+YF+V GV VL+WK Sbjct: 14 VFAEDMTDAMLDKVLSTAKDAFQLQVTSEKTFSTIAEFVRRNMEKEYGRGWNCVVGSSFGAYVTHEIKTYVYFSVAIGVSVLVWKT 99
BLAST of jgi.p|Trimin1|349899 vs. uniprot
Match: A0A7S4E7C9_9STRA (Dynein light chain n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4E7C9_9STRA) HSP 1 Score: 109 bits (272), Expect = 7.270e-29 Identity = 48/93 (51.61%), Postives = 70/93 (75.27%), Query Frame = 1 Query: 25 MANKHQHIFAEDMTDDMCQFALKTSEEAFHLTINKGQVFTAIASYIRRTFEKTYGRGWNVVVGRAFGAYVTHEIKTYMYFTVIPGVYVLIWKA 303 MA Q +FAEDM+++ F L+ + +AF+ +G+V++ +A++IR EK YG+GWNVVVG++FGA+VTHEIKTY Y +V+PGV VLIW+ Sbjct: 1 MAKATQQVFAEDMSEEKVDFCLEIATDAFNQASFQGKVYSYVANFIRAALEKQYGKGWNVVVGKSFGAFVTHEIKTYFYGSVVPGVCVLIWRC 93
BLAST of jgi.p|Trimin1|349899 vs. uniprot
Match: A0A225VFG7_9STRA (Dynein light chain n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225VFG7_9STRA) HSP 1 Score: 113 bits (282), Expect = 7.140e-28 Identity = 51/86 (59.30%), Postives = 64/86 (74.42%), Query Frame = 1 Query: 46 IFAEDMTDDMCQFALKTSEEAFHLTINKGQVFTAIASYIRRTFEKTYGRGWNVVVGRAFGAYVTHEIKTYMYFTVIPGVYVLIWKA 303 +FAEDMTD M + AL T+ +AF L + + F+ IA ++RR EK YGRGWN VVG +FGAYVTHEIKTY+YF+V GV VL+WK Sbjct: 14 VFAEDMTDVMLEKALSTARDAFQLQVTSEKTFSTIAEFVRRNMEKEYGRGWNCVVGSSFGAYVTHEIKTYVYFSVAAGVSVLVWKT 99
BLAST of jgi.p|Trimin1|349899 vs. uniprot
Match: F0W814_9STRA (Dynein light chain n=3 Tax=Albugo TaxID=65356 RepID=F0W814_9STRA) HSP 1 Score: 105 bits (262), Expect = 1.430e-27 Identity = 47/86 (54.65%), Postives = 63/86 (73.26%), Query Frame = 1 Query: 46 IFAEDMTDDMCQFALKTSEEAFHLTINKGQVFTAIASYIRRTFEKTYGRGWNVVVGRAFGAYVTHEIKTYMYFTVIPGVYVLIWKA 303 ++AEDMT+ M +++AF L I G+ F++IA +IRR EK YGRGWN VVG +FGA+VTHEIKTY+YF+V GV +L+WK Sbjct: 11 VYAEDMTEPMLDKVTTLAKDAFQLQITAGKTFSSIADFIRRNMEKEYGRGWNCVVGNSFGAFVTHEIKTYVYFSVTFGVSILLWKT 96
BLAST of jgi.p|Trimin1|349899 vs. uniprot
Match: H3HCG0_PHYRM (Dynein light chain n=21 Tax=Oomycota TaxID=4762 RepID=H3HCG0_PHYRM) HSP 1 Score: 105 bits (261), Expect = 1.980e-27 Identity = 49/82 (59.76%), Postives = 61/82 (74.39%), Query Frame = 1 Query: 46 IFAEDMTDDMCQFALKTSEEAFHLTINKGQVFTAIASYIRRTFEKTYGRGWNVVVGRAFGAYVTHEIKTYMYFTVIPGVYVL 291 +FAEDMTD M + AL T+ +AF L + + F+ IA ++RR EK YGRGWN VVG +FGAYVTHEIKTY+YF+V GV VL Sbjct: 14 VFAEDMTDAMLEKALGTARDAFQLQVTSEKTFSTIAEFVRRNMEKEYGRGWNCVVGSSFGAYVTHEIKTYVYFSVAAGVSVL 95
BLAST of jgi.p|Trimin1|349899 vs. uniprot
Match: A0A835YVY6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVY6_9STRA) HSP 1 Score: 1237 bits (3200), Expect = 0.000e+0 Identity = 758/758 (100.00%), Postives = 758/758 (100.00%), Query Frame = 1 Query: 1 MAAKASQAQLSVLHAKVLALRPVCQVVSALATSGSSCQLAKPTAGMRTTTGQARPQNFAWNVDHGNSSGCDEDNDGLESGYGSDVENQDWKQVWSERFKKGPLRTDYQAHFSWPPATAYSSPVKPPGAPPXXXXXXXXXKTAFAHARAGAAARSLDQHDASSIRGQRVRPQGSVADVPSSALRGATAGXXXXXXXXXXDGDVEEQRGEAGDAHLTPLPARAWGGAAGEGAAAAAAAPEQAVRQKGAGDPTARQDNVAYLLGEEGARPPPSPARSGRAEAAQPERDDVRQLLDDWSQRASPLHTGRREPLQRAARAKRHGTDGRPLHDGGPQRSAMYTAQGERACATSCPGGAHGEREEDSVGALLHARARLPPXXXXXXXTQLGAFAASVDRAQAAVKGRDLAVLCALPRPPAAVRALVHGVVSLLAPHVRMRWEELRTHVLRNGYNFARLLDGFNKDAPAVTPAALAFTTQRWAQPDFISGIATAARGLATWLQALHAYAAYKAGPTAALPLPPPMRAAPQPLTPAAAXXGNAAAARGVRPVMTADAARRLAQEXXXXXXXXXXXXXSAVPAAGGPMAATPQHSVAGSSRMSAYGRGTPMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRAAAVRARIQAAASVAGEEFAESVCGAGSVVDPSVLSQSGWRGSHGGSGAFEALKLARRRNELARKNAARAAARAEDLRNPLLANVRYPVVRTRPQTEYMARYRWVDC 2274 MAAKASQAQLSVLHAKVLALRPVCQVVSALATSGSSCQLAKPTAGMRTTTGQARPQNFAWNVDHGNSSGCDEDNDGLESGYGSDVENQDWKQVWSERFKKGPLRTDYQAHFSWPPATAYSSPVKPPGAPPXXXXXXXXXKTAFAHARAGAAARSLDQHDASSIRGQRVRPQGSVADVPSSALRGATAGXXXXXXXXXXDGDVEEQRGEAGDAHLTPLPARAWGGAAGEGAAAAAAAPEQAVRQKGAGDPTARQDNVAYLLGEEGARPPPSPARSGRAEAAQPERDDVRQLLDDWSQRASPLHTGRREPLQRAARAKRHGTDGRPLHDGGPQRSAMYTAQGERACATSCPGGAHGEREEDSVGALLHARARLPPXXXXXXXTQLGAFAASVDRAQAAVKGRDLAVLCALPRPPAAVRALVHGVVSLLAPHVRMRWEELRTHVLRNGYNFARLLDGFNKDAPAVTPAALAFTTQRWAQPDFISGIATAARGLATWLQALHAYAAYKAGPTAALPLPPPMRAAPQPLTPAAAXXGNAAAARGVRPVMTADAARRLAQEXXXXXXXXXXXXXSAVPAAGGPMAATPQHSVAGSSRMSAYGRGTPMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRAAAVRARIQAAASVAGEEFAESVCGAGSVVDPSVLSQSGWRGSHGGSGAFEALKLARRRNELARKNAARAAARAEDLRNPLLANVRYPVVRTRPQTEYMARYRWVDC Sbjct: 1 MAAKASQAQLSVLHAKVLALRPVCQVVSALATSGSSCQLAKPTAGMRTTTGQARPQNFAWNVDHGNSSGCDEDNDGLESGYGSDVENQDWKQVWSERFKKGPLRTDYQAHFSWPPATAYSSPVKPPGAPPXXXXXXXXXKTAFAHARAGAAARSLDQHDASSIRGQRVRPQGSVADVPSSALRGATAGXXXXXXXXXXDGDVEEQRGEAGDAHLTPLPARAWGGAAGEGAAAAAAAPEQAVRQKGAGDPTARQDNVAYLLGEEGARPPPSPARSGRAEAAQPERDDVRQLLDDWSQRASPLHTGRREPLQRAARAKRHGTDGRPLHDGGPQRSAMYTAQGERACATSCPGGAHGEREEDSVGALLHARARLPPXXXXXXXTQLGAFAASVDRAQAAVKGRDLAVLCALPRPPAAVRALVHGVVSLLAPHVRMRWEELRTHVLRNGYNFARLLDGFNKDAPAVTPAALAFTTQRWAQPDFISGIATAARGLATWLQALHAYAAYKAGPTAALPLPPPMRAAPQPLTPAAAXXGNAAAARGVRPVMTADAARRLAQEXXXXXXXXXXXXXSAVPAAGGPMAATPQHSVAGSSRMSAYGRGTPMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRAAAVRARIQAAASVAGEEFAESVCGAGSVVDPSVLSQSGWRGSHGGSGAFEALKLARRRNELARKNAARAAARAEDLRNPLLANVRYPVVRTRPQTEYMARYRWVDC 758
BLAST of jgi.p|Trimin1|349899 vs. uniprot
Match: D8LMZ6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMZ6_ECTSI) HSP 1 Score: 65.9 bits (159), Expect = 3.320e-7 Identity = 59/180 (32.78%), Postives = 76/180 (42.22%), Query Frame = 1 Query: 994 RSAMYTAQGERACATSCPG-GAHGEREE---DSVGALLHARARLPPXXXXXXXTQLGAFAASVDRAQAAVKGRDLAVLCALPRPPAAVRALVHGVVSLLAPHVRMRWEELRTHVLRNGYNFARLLDGFNKD-APAVTPAALAFTTQRWAQPDFISGIATAARGLATWLQALHAYAAYKAG 1518 +S + E A +S P G G+R D VG LL R P + A+ DRA A L+ +C L PP A R L+ G+V L R RW ++RTH+L N L FNKD A + A L F P + +A + WL ALH Y A K G Sbjct: 484 QSILTEYMDEYAWPSSLPAPGRRGKRSGMGVDHVGRLLAGRRAEEPARKLPDPAVVARLGAAADRALGAGSLGHLSEMCRLKSPPLACRRLMLGLVIALGLRWR-RWSDIRTHLLGNKPELQGFLKRFNKDRAGLASTALLPFVEDPSLSPAEVRRVAACMVWVPRWLHALHDYLAVKEG 662 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|349899 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
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BLAST of jgi.p|Trimin1|349899 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_8805 ID=mRNA_8805|Name=jgi.p|Trimin1|349899|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=306bp|location=Sequence derived from alignment at Contig_51:518028..519397- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. GAAAGGCAGCTCTTGCACGTGACCATGGCGAACAAGCACCAGCACATTTTback to top protein sequence of jgi.p|Trimin1|349899 >Trimin1|349899|estExt_Genemark1.C_Ctg_510046 ID=Trimin1|349899|estExt_Genemark1.C_Ctg_510046|Name=jgi.p|Trimin1|349899|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=94bp MANKHQHIFAEDMTDDMCQFALKTSEEAFHLTINKGQVFTAIASYIRRTFback to top mRNA from alignment at Contig_51:518028..519397- Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_8805 ID=mRNA_8805|Name=jgi.p|Trimin1|349899|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1370bp|location=Sequence derived from alignment at Contig_51:518028..519397- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_51:518028..519397- >mRNA_8805 ID=mRNA_8805|Name=jgi.p|Trimin1|349899|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=282bp|location=Sequence derived from alignment at Contig_51:518028..519397- (Tribonema minus UTEX_B_3156 )back to top |