mRNA_8813 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|139405
Unique NamemRNA_8813
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|139405 vs. uniprot
Match: A0A835YQG5_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQG5_9STRA)

HSP 1 Score: 329 bits (844), Expect = 1.590e-114
Identity = 155/155 (100.00%), Postives = 155/155 (100.00%), Query Frame = 1
Query:    1 DLVVEQVWKFDDGIVDENMGVTHLDWIPGTEKVIVARKKGYLHMYDTIDAGVDEYKEVFDMNVDVASLDDHGLLGFAFHPNFGKPGVGTNSVFILYSGQPKDVTLLPNDAAVAQLRPAGWGQGPPGTKGYAWDESGYLCPALEKPLNNYGGKLCE 465
            DLVVEQVWKFDDGIVDENMGVTHLDWIPGTEKVIVARKKGYLHMYDTIDAGVDEYKEVFDMNVDVASLDDHGLLGFAFHPNFGKPGVGTNSVFILYSGQPKDVTLLPNDAAVAQLRPAGWGQGPPGTKGYAWDESGYLCPALEKPLNNYGGKLCE
Sbjct:    1 DLVVEQVWKFDDGIVDENMGVTHLDWIPGTEKVIVARKKGYLHMYDTIDAGVDEYKEVFDMNVDVASLDDHGLLGFAFHPNFGKPGVGTNSVFILYSGQPKDVTLLPNDAAVAQLRPAGWGQGPPGTKGYAWDESGYLCPALEKPLNNYGGKLCE 155          
BLAST of jgi.p|Trimin1|139405 vs. uniprot
Match: A0A835ZCH6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCH6_9STRA)

HSP 1 Score: 146 bits (369), Expect = 2.850e-40
Identity = 78/158 (49.37%), Postives = 103/158 (65.19%), Query Frame = 1
Query:    1 DLVVEQVWKFDD--GIVDENMGVTHLDWIPGTEKVIVARKKGYLHMYDTIDAGVDEYKEVFDMNVDVASLDDHGLLGFAFHPNFG-KPGVGTNSVFILYSGQPKDVTLLPNDAAVAQLRPAGWGQGPPGTKGYAWDESGYLCPALEKPLNNYGGKLCE 465
            DLVVE VW+F    G +D+    T + W+PGTE+V+ + K G + +YD+IDAGV+++    +  +DV S  DHGLL F FHP+F  K GVG+  +F+LYSG PKDVTLLPN+  VA +RP  WG GPP  KGY W +    CP L K  +N  G +CE
Sbjct:   43 DLVVELVWQFVQPAGNLDQP---TQIKWLPGTEQVVTSHKTGTMRLYDSIDAGVEDFIPFANNQLDVDSEGDHGLLSFQFHPDFNVKAGVGSKYIFLLYSGNPKDVTLLPNNDVVAAVRPPTWGAGPPDPKGYTWGDG--PCPDLGK--DNMDGLICE 193          
BLAST of jgi.p|Trimin1|139405 vs. uniprot
Match: A0A835YGZ7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YGZ7_9STRA)

HSP 1 Score: 136 bits (342), Expect = 5.880e-36
Identity = 73/157 (46.50%), Postives = 98/157 (62.42%), Query Frame = 1
Query:    4 LVVEQVWKFDDGIVDENMGVTHLDWIPGTEKVIVARKKGYLHMYDTIDAGVDEYKEVFDMNVDVASLDDHGLLGFAFHPNFGKPGVGTNSVFILYSGQPKDVTLLPNDAAVAQLRPAGWGQGP---PGTKGYAWDESGYLCPALEKPLNNYGGKLCE 465
            LVVE VW+FD   + E   V  + W+PGT++V+   K G + +Y +IDA VD++ ++ D+ + V S  DHGLL   FHPNF  P  GT + F++YSG PKDVTLLPN+AA++  RPA WG      PG  GY W E   LC  L    +NY G++CE
Sbjct:   44 LVVEHVWQFDPDNLAEC--VVQIQWVPGTDQVVTVHKHGIVRLYPSIDASVDDFVQLIDLRIAVDSDSDHGLLSLNFHPNFAGPN-GTKTAFLMYSGNPKDVTLLPNNAAISPKRPADWGSQTGDLPG--GYEWPED--LCTNLGP--DNYNGEICE 191          
BLAST of jgi.p|Trimin1|139405 vs. uniprot
Match: A0A835YVH6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVH6_9STRA)

HSP 1 Score: 137 bits (346), Expect = 1.020e-34
Identity = 74/160 (46.25%), Postives = 100/160 (62.50%), Query Frame = 1
Query:    1 DLVVEQVWKF--DDGIVDENMGVTHLDWIPGTEKVIV-ARKKGYLHMYDTIDAGVDEYKEVFDMNVDVASLDDHGLLGFAFHPNFGKPGVGTNSVFILYSGQPKDVTLLPNDAAVAQLRPAGWGQGPPGTKGYAWDESGYLCPALEKPLN--NYGGKLCE 465
            DLV+E +W+F  DD  V        L ++PGT+ ++V A K G++ +Y  +DA V++YK + DM  DV S  DHGLL FAFHP+F K   G    F+ Y+G+PKDV++LPNDAA+   RP GWG GPP T GY W   G +CP L+      N+ G +CE
Sbjct:   38 DLVIEHLWQFSMDDPPVK-------LAFVPGTDGMVVTAHKTGFMRLYQNVDADVNDYKTLIDMRADVFSFGDHGLLSFAFHPDFEK---GVKKAFLHYTGEPKDVSVLPNDAAITPNRPQGWGLGPPETTGYTW---GDICPCLDCDGTGPNHYGNICE 184          
BLAST of jgi.p|Trimin1|139405 vs. uniprot
Match: A0A835YZK9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZK9_9STRA)

HSP 1 Score: 112 bits (279), Expect = 8.880e-26
Identity = 65/164 (39.63%), Postives = 93/164 (56.71%), Query Frame = 1
Query:    4 LVVEQVWKFDDGIVDENMGVTHLDWIPGTEKVIVARKKGYLHMYDTIDAGVDEYKEVFDMNVD--------VASLDDHGLLGFAFHPNFGKPGVGTNSVFILYSGQPKDVTLLPNDAAVAQLRPAGWGQGPPGTKGYAWDESGYLCPALEKPLN--NYGGKLCE 465
            ++VE +W +     DE+   T + ++PG+E+V+VA K G L +YD+ID+GV+ Y  + DM  +        V S+ DHGL  F FHP++     G   VF+LYSG+PKD+  LPN AA+   RP  +G GPPG  G  W +    CP L+      N  G +CE
Sbjct:   43 VLVELLWTW-----DEDDLPTMIKFVPGSEQVLVAHKLGTLRLYDSIDSGVNAYTLLVDMTAELXXXXXXEVNSIHDHGLTSFEFHPDWD---AGVRKVFLLYSGEPKDIRKLPNYAAILADRPPDYGTGPPGDHGQTWGDE---CPCLDCDGTGANLDGLVCE 195          
BLAST of jgi.p|Trimin1|139405 vs. uniprot
Match: A0A835YXY7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXY7_9STRA)

HSP 1 Score: 110 bits (275), Expect = 3.500e-25
Identity = 60/158 (37.97%), Postives = 87/158 (55.06%), Query Frame = 1
Query:    4 LVVEQVW--KFDDGIVDENMGVTHLDWIPGTEKVIVARKKGYLHMYDTIDAGVDEYKEVFDMNVDVASLDDHGLLGFAFHPNFGKPGVGTNSVFILYSGQPKDVTLLPNDAAVAQLRPAGWGQGPPGTKGYAWDESGYLCPALE--KPLNNYGGKLCE 465
            L+VE +W  ++DD  V        + ++PG+++VI   K G + +YD + +    YK + DM  D   L DHGLL   +HP++     G   +F+LY+G+PKDV  LPN+ AV   RP  WG+GPPG  G  W +S   CP L+      N  G +CE
Sbjct:   22 LLVEHIWTWQYDDRAV-------MIKFVPGSDQVISVHKAGNVRLYDNLQSDPYYYKHLVDMTADTYDLGDHGLLAMEYHPDWD---AGVRKIFVLYTGEPKDVRQLPNNDAVEDDRPTSWGKGPPGKHGQLWPDS---CPCLDCDGAGKNRDGLICE 166          
BLAST of jgi.p|Trimin1|139405 vs. uniprot
Match: A0A835ZE02_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZE02_9STRA)

HSP 1 Score: 106 bits (264), Expect = 4.340e-25
Identity = 61/157 (38.85%), Postives = 88/157 (56.05%), Query Frame = 1
Query:    1 DLVVEQVWKFDDGIVDENMGVTHLDWIPGTEKVIVARKKGYLHMYDTIDAGVDEYKEVFDMNVDVASLDDHGLLGFAFHPNFGKPGVGTNSVFILYSGQPKDVTLLPNDAAVAQLRPAGWGQGPPGTKGYAWDESGYLCPAL--EKPLNNYGGKLCE 465
            +L +EQ+W F     + N   T L ++PG++ VI   K G L  Y++IDA  D++  + DM+ DV S  DHG+    FHP++    +G ++ F+LY+G+PK V  LPN+AA+  +RP GWG       GY W +    CP L  E    N  G LCE
Sbjct:    9 ELKLEQLWTF-----EYNDKPTMLRFVPGSDAVITVGKTGVLRWYNSIDADKDKFTVMLDMSADVHSNADHGVQSLEFHPDWD---LGVHTAFVLYTGEPKSVKTLPNEAAIKSMRPDGWGDD---NGGYKWWDQ---CPCLDCEGTGQNENGLLCE 151          
BLAST of jgi.p|Trimin1|139405 vs. uniprot
Match: A0A835Z9F2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9F2_9STRA)

HSP 1 Score: 102 bits (254), Expect = 1.940e-24
Identity = 57/149 (38.26%), Postives = 84/149 (56.38%), Query Frame = 1
Query:    4 LVVEQVWKFDDGIVDENMGVTHLDWIPGTEKVIVARKKGYLHMYDTIDAGVDEYKEVFDMNVD----------------VASLDDHGLLGFAFHPNFGKPGVGTNSVFILYSGQPKDVTLLPNDAAVAQLRPAGWGQGPPGTKGYAWDE 402
            ++VE +W +D   VD+    T + ++PG ++V+VA K G L +YD+ID+ V++YK + DM  D                V S+ DHG+  F FHP++     G   +F+LY+G+PKDV  LPN   V   RP  +G GPPGT G  W +
Sbjct:   42 VLVELLWAWD---VDDRP--TMIKFVPGADQVMVAHKLGTLRLYDSIDSDVNDYKLLVDMTADLXXXXXXXXXXXXXXXVNSITDHGITSFEFHPDWDG---GVRKLFVLYTGEPKDVRKLPNYKVVLPYRPPAYGTGPPGTHGQTWGD 182          
BLAST of jgi.p|Trimin1|139405 vs. uniprot
Match: A0A836CK08_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CK08_9STRA)

HSP 1 Score: 100 bits (248), Expect = 1.540e-21
Identity = 49/123 (39.84%), Postives = 70/123 (56.91%), Query Frame = 1
Query:   97 VIVARKKGYLHMYDTIDAGVDEYKEVFDMNVDVASLDDHGLLGFAFHPNFGKPGVGTNSVFILYSGQPKDVTLLPNDAAVAQLRPAGWGQGPPGTKGYAWDESGYLCPALEKPLNNYGGKLCE 465
            V+ + K G + ++ +I A   +   + DM  DVA  +DHGLL F FHP F     G    F+LY+G+PKDV +LPN+A +   RP GWG GPPG  G+ W++    C   +    N+ G +CE
Sbjct:    2 VVTSHKSGMVRLHSSITADFADSTVMLDMTEDVADYNDHGLLSFHFHPQFAN---GVQKAFLLYTGEPKDVNVLPNNAEITPNRPDGWGAGPPGKMGFTWNDQ-CRCLDCDGIGPNHYGNICE 120          
BLAST of jgi.p|Trimin1|139405 vs. uniprot
Match: A0A835YYP6_9STRA (Plastocyanin-like domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYP6_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 5.560e-9
Identity = 43/126 (34.13%), Postives = 61/126 (48.41%), Query Frame = 1
Query:    4 LVVEQVWKFDDGIVDENMGVTHLDWIPGTEKVIVARKKGYLHMYDTIDAGVDEYKEVFDMNVDVASLDDHGLLGFAFHPNFGKPGVGTNS-VFILYSGQ-----PKDVTLLPNDAAVAQLRPAGWG 363
            LVV+Q W+F           T L + P +  VI   K G + +YD++D   ++YK + ++   V S DDHG++GFAF P +G   V  N   ++ Y  Q         T  PN A V   RP  WG
Sbjct:   70 LVVQQHWEF-----SPQEKATALRFSPISAHVITIHKHGEVRLYDSVDVDGEDYKTILNIEDKVYSADDHGMVGFAFDPQYG---VDRNQYAYLFYMSQLGPAHAVSKTTFPNPA-VGATRPLDWG 186          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|139405 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
A0A835YQG5_9STRA1.590e-114100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A835ZCH6_9STRA2.850e-4049.37Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YGZ7_9STRA5.880e-3646.50Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YVH6_9STRA1.020e-3446.25Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YZK9_9STRA8.880e-2639.63Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YXY7_9STRA3.500e-2537.97Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835ZE02_9STRA4.340e-2538.85Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A835Z9F2_9STRA1.940e-2438.26Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CK08_9STRA1.540e-2139.84Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A835YYP6_9STRA5.560e-934.13Plastocyanin-like domain-containing protein (Fragm... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_51contigContig_51:563523..564098 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|139405|gw1.51.26.1
DescriptionPA14
COG categoryG
Max annot lvl1117|Cyanobacteria
EggNOG OGsCOG2133@1|root,COG2133@2|Bacteria,1G2CB@1117|Cyanobacteria,1HRM4@1161|Nostocales
Evalue3.5e-05
Seed ortholog63737.Npun_F3469
Hectar predicted targeting categoryother localisation
TranscriptId139727
TrackFilteredModels1
ProteinId139405
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|139405gene_8813Tribonema minus UTEX_B_3156 geneContig_51 563523..564098 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_8813_1exon_8813_1Tribonema minus UTEX_B_3156 exonContig_51 563523..563796 +
exon_8813_2exon_8813_2Tribonema minus UTEX_B_3156 exonContig_51 563908..564098 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_8813CDS_8813Tribonema minus UTEX_B_3156 CDSContig_51 563523..563796 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|139405Trimin1|139405|gw1.51.26.1Tribonema minus UTEX_B_3156 polypeptideContig_51 563523..564098 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_8813 ID=mRNA_8813|Name=jgi.p|Trimin1|139405|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=465bp|location=Sequence derived from alignment at Contig_51:563523..564098+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GACCTTGTCGTGGAGCAAGTATGGAAGTTCGACGACGGCATCGTGGACGA
AAATATGGGTGTAACTCACCTTGACTGGATCCCGGGCACGGAGAAGGTCA
TTGTGGCCCGCAAGAAGGGCTACCTGCACATGTACGACACCATCGATGCC
GGCGTGGACGAGTACAAGGAGGTTTTCGACATGAACGTCGATGTCGCTAG
TCTCGACGATCACGGTCTGCTCGGGTTTGCCTTCCACCCCAACTTTGGGA
AGCCGGGCGTAGGCACCAACTCAGTATTCATCCTTTACAGCGGACAGCCG
AAGGATGTCACGCTGCTCCCCAACGACGCTGCGGTCGCACAGCTGCGCCC
AGCTGGGTGGGGCCAGGGACCTCCGGGCACCAAGGGTTACGCTTGGGACG
AGAGCGGCTACCTCTGTCCGGCGCTGGAGAAGCCGCTCAACAACTACGGC
GGCAAGCTGTGCGAG
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protein sequence of jgi.p|Trimin1|139405

>Trimin1|139405|gw1.51.26.1 ID=Trimin1|139405|gw1.51.26.1|Name=jgi.p|Trimin1|139405|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=155bp
DLVVEQVWKFDDGIVDENMGVTHLDWIPGTEKVIVARKKGYLHMYDTIDA
GVDEYKEVFDMNVDVASLDDHGLLGFAFHPNFGKPGVGTNSVFILYSGQP
KDVTLLPNDAAVAQLRPAGWGQGPPGTKGYAWDESGYLCPALEKPLNNYG
GKLCE
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mRNA from alignment at Contig_51:563523..564098+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8813 ID=mRNA_8813|Name=jgi.p|Trimin1|139405|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=576bp|location=Sequence derived from alignment at Contig_51:563523..564098+ (Tribonema minus UTEX_B_3156 )
GACCTTGTCGTGGAGCAAGTATGGAAGTTCGACGACGGCATCGTGGACGA AAATATGGGTGTAACTCACCTTGACTGGATCCCGGGCACGGAGAAGGTCA TTGTGGCCCGCAAGAAGGGCTACCTGCACATGTACGACACCATCGATGCC GGCGTGGACGAGTACAAGGAGGTTTTCGACATGAACGTCGATGTCGCTAG TCTCGACGATCACGGTCTGCTCGGGTTTGCCTTCCACCCCAACTTTGGGA AGCCGGGCGTAGGCACCAACTCAGGTGAACAGCTTGCCCTGCTCGCACAA TGAAAGCTTGCCCGATTTTACCCTTCGTGTGCGTACTCGGGTTTACTGAC GCGCTTGTCTCCGATGTGCTGTGTGCGTGTCGCAGTATTCATCCTTTACA GCGGACAGCCGAAGGATGTCACGCTGCTCCCCAACGACGCTGCGGTCGCA CAGCTGCGCCCAGCTGGGTGGGGCCAGGGACCTCCGGGCACCAAGGGTTA CGCTTGGGACGAGAGCGGCTACCTCTGTCCGGCGCTGGAGAAGCCGCTCA ACAACTACGGCGGCAAGCTGTGCGAG
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Coding sequence (CDS) from alignment at Contig_51:563523..564098+

>mRNA_8813 ID=mRNA_8813|Name=jgi.p|Trimin1|139405|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=465bp|location=Sequence derived from alignment at Contig_51:563523..564098+ (Tribonema minus UTEX_B_3156 )
GACCTTGTCGTGGAGCAAGTATGGAAGTTCGACGACGGCATCGTGGACGA
AAATATGGGTGTAACTCACCTTGACTGGATCCCGGGCACGGAGAAGGTCA
TTGTGGCCCGCAAGAAGGGCTACCTGCACATGTACGACACCATCGATGCC
GGCGTGGACGAGTACAAGGAGGTTTTCGACATGAACGTCGATGTCGCTAG
TCTCGACGATCACGGTCTGCTCGGGTTTGCCTTCCACCCCAACTTTGGGA
AGCCGGGCGTAGGCACCAACTCAGTATTCATCCTTTACAGCGGACAGCCG
AAGGATGTCACGCTGCTCCCCAACGACGCTGCGGTCGCACAGCTGCGCCC
AGCTGGGTGGGGCCAGGGACCTCCGGGCACCAAGGGTTACGCTTGGGACG
AGAGCGGCTACCTCTGTCCGGCGCTGGAGAAGCCGCTCAACAACTACGGC
GGCAAGCTGTGCGAG
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