mRNA_8813 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|139405 vs. uniprot
Match: A0A835YQG5_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQG5_9STRA) HSP 1 Score: 329 bits (844), Expect = 1.590e-114 Identity = 155/155 (100.00%), Postives = 155/155 (100.00%), Query Frame = 1 Query: 1 DLVVEQVWKFDDGIVDENMGVTHLDWIPGTEKVIVARKKGYLHMYDTIDAGVDEYKEVFDMNVDVASLDDHGLLGFAFHPNFGKPGVGTNSVFILYSGQPKDVTLLPNDAAVAQLRPAGWGQGPPGTKGYAWDESGYLCPALEKPLNNYGGKLCE 465 DLVVEQVWKFDDGIVDENMGVTHLDWIPGTEKVIVARKKGYLHMYDTIDAGVDEYKEVFDMNVDVASLDDHGLLGFAFHPNFGKPGVGTNSVFILYSGQPKDVTLLPNDAAVAQLRPAGWGQGPPGTKGYAWDESGYLCPALEKPLNNYGGKLCE Sbjct: 1 DLVVEQVWKFDDGIVDENMGVTHLDWIPGTEKVIVARKKGYLHMYDTIDAGVDEYKEVFDMNVDVASLDDHGLLGFAFHPNFGKPGVGTNSVFILYSGQPKDVTLLPNDAAVAQLRPAGWGQGPPGTKGYAWDESGYLCPALEKPLNNYGGKLCE 155
BLAST of jgi.p|Trimin1|139405 vs. uniprot
Match: A0A835ZCH6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCH6_9STRA) HSP 1 Score: 146 bits (369), Expect = 2.850e-40 Identity = 78/158 (49.37%), Postives = 103/158 (65.19%), Query Frame = 1 Query: 1 DLVVEQVWKFDD--GIVDENMGVTHLDWIPGTEKVIVARKKGYLHMYDTIDAGVDEYKEVFDMNVDVASLDDHGLLGFAFHPNFG-KPGVGTNSVFILYSGQPKDVTLLPNDAAVAQLRPAGWGQGPPGTKGYAWDESGYLCPALEKPLNNYGGKLCE 465 DLVVE VW+F G +D+ T + W+PGTE+V+ + K G + +YD+IDAGV+++ + +DV S DHGLL F FHP+F K GVG+ +F+LYSG PKDVTLLPN+ VA +RP WG GPP KGY W + CP L K +N G +CE Sbjct: 43 DLVVELVWQFVQPAGNLDQP---TQIKWLPGTEQVVTSHKTGTMRLYDSIDAGVEDFIPFANNQLDVDSEGDHGLLSFQFHPDFNVKAGVGSKYIFLLYSGNPKDVTLLPNNDVVAAVRPPTWGAGPPDPKGYTWGDG--PCPDLGK--DNMDGLICE 193
BLAST of jgi.p|Trimin1|139405 vs. uniprot
Match: A0A835YGZ7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YGZ7_9STRA) HSP 1 Score: 136 bits (342), Expect = 5.880e-36 Identity = 73/157 (46.50%), Postives = 98/157 (62.42%), Query Frame = 1 Query: 4 LVVEQVWKFDDGIVDENMGVTHLDWIPGTEKVIVARKKGYLHMYDTIDAGVDEYKEVFDMNVDVASLDDHGLLGFAFHPNFGKPGVGTNSVFILYSGQPKDVTLLPNDAAVAQLRPAGWGQGP---PGTKGYAWDESGYLCPALEKPLNNYGGKLCE 465 LVVE VW+FD + E V + W+PGT++V+ K G + +Y +IDA VD++ ++ D+ + V S DHGLL FHPNF P GT + F++YSG PKDVTLLPN+AA++ RPA WG PG GY W E LC L +NY G++CE Sbjct: 44 LVVEHVWQFDPDNLAEC--VVQIQWVPGTDQVVTVHKHGIVRLYPSIDASVDDFVQLIDLRIAVDSDSDHGLLSLNFHPNFAGPN-GTKTAFLMYSGNPKDVTLLPNNAAISPKRPADWGSQTGDLPG--GYEWPED--LCTNLGP--DNYNGEICE 191
BLAST of jgi.p|Trimin1|139405 vs. uniprot
Match: A0A835YVH6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVH6_9STRA) HSP 1 Score: 137 bits (346), Expect = 1.020e-34 Identity = 74/160 (46.25%), Postives = 100/160 (62.50%), Query Frame = 1 Query: 1 DLVVEQVWKF--DDGIVDENMGVTHLDWIPGTEKVIV-ARKKGYLHMYDTIDAGVDEYKEVFDMNVDVASLDDHGLLGFAFHPNFGKPGVGTNSVFILYSGQPKDVTLLPNDAAVAQLRPAGWGQGPPGTKGYAWDESGYLCPALEKPLN--NYGGKLCE 465 DLV+E +W+F DD V L ++PGT+ ++V A K G++ +Y +DA V++YK + DM DV S DHGLL FAFHP+F K G F+ Y+G+PKDV++LPNDAA+ RP GWG GPP T GY W G +CP L+ N+ G +CE Sbjct: 38 DLVIEHLWQFSMDDPPVK-------LAFVPGTDGMVVTAHKTGFMRLYQNVDADVNDYKTLIDMRADVFSFGDHGLLSFAFHPDFEK---GVKKAFLHYTGEPKDVSVLPNDAAITPNRPQGWGLGPPETTGYTW---GDICPCLDCDGTGPNHYGNICE 184
BLAST of jgi.p|Trimin1|139405 vs. uniprot
Match: A0A835YZK9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZK9_9STRA) HSP 1 Score: 112 bits (279), Expect = 8.880e-26 Identity = 65/164 (39.63%), Postives = 93/164 (56.71%), Query Frame = 1 Query: 4 LVVEQVWKFDDGIVDENMGVTHLDWIPGTEKVIVARKKGYLHMYDTIDAGVDEYKEVFDMNVD--------VASLDDHGLLGFAFHPNFGKPGVGTNSVFILYSGQPKDVTLLPNDAAVAQLRPAGWGQGPPGTKGYAWDESGYLCPALEKPLN--NYGGKLCE 465 ++VE +W + DE+ T + ++PG+E+V+VA K G L +YD+ID+GV+ Y + DM + V S+ DHGL F FHP++ G VF+LYSG+PKD+ LPN AA+ RP +G GPPG G W + CP L+ N G +CE Sbjct: 43 VLVELLWTW-----DEDDLPTMIKFVPGSEQVLVAHKLGTLRLYDSIDSGVNAYTLLVDMTAELXXXXXXEVNSIHDHGLTSFEFHPDWD---AGVRKVFLLYSGEPKDIRKLPNYAAILADRPPDYGTGPPGDHGQTWGDE---CPCLDCDGTGANLDGLVCE 195
BLAST of jgi.p|Trimin1|139405 vs. uniprot
Match: A0A835YXY7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXY7_9STRA) HSP 1 Score: 110 bits (275), Expect = 3.500e-25 Identity = 60/158 (37.97%), Postives = 87/158 (55.06%), Query Frame = 1 Query: 4 LVVEQVW--KFDDGIVDENMGVTHLDWIPGTEKVIVARKKGYLHMYDTIDAGVDEYKEVFDMNVDVASLDDHGLLGFAFHPNFGKPGVGTNSVFILYSGQPKDVTLLPNDAAVAQLRPAGWGQGPPGTKGYAWDESGYLCPALE--KPLNNYGGKLCE 465 L+VE +W ++DD V + ++PG+++VI K G + +YD + + YK + DM D L DHGLL +HP++ G +F+LY+G+PKDV LPN+ AV RP WG+GPPG G W +S CP L+ N G +CE Sbjct: 22 LLVEHIWTWQYDDRAV-------MIKFVPGSDQVISVHKAGNVRLYDNLQSDPYYYKHLVDMTADTYDLGDHGLLAMEYHPDWD---AGVRKIFVLYTGEPKDVRQLPNNDAVEDDRPTSWGKGPPGKHGQLWPDS---CPCLDCDGAGKNRDGLICE 166
BLAST of jgi.p|Trimin1|139405 vs. uniprot
Match: A0A835ZE02_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZE02_9STRA) HSP 1 Score: 106 bits (264), Expect = 4.340e-25 Identity = 61/157 (38.85%), Postives = 88/157 (56.05%), Query Frame = 1 Query: 1 DLVVEQVWKFDDGIVDENMGVTHLDWIPGTEKVIVARKKGYLHMYDTIDAGVDEYKEVFDMNVDVASLDDHGLLGFAFHPNFGKPGVGTNSVFILYSGQPKDVTLLPNDAAVAQLRPAGWGQGPPGTKGYAWDESGYLCPAL--EKPLNNYGGKLCE 465 +L +EQ+W F + N T L ++PG++ VI K G L Y++IDA D++ + DM+ DV S DHG+ FHP++ +G ++ F+LY+G+PK V LPN+AA+ +RP GWG GY W + CP L E N G LCE Sbjct: 9 ELKLEQLWTF-----EYNDKPTMLRFVPGSDAVITVGKTGVLRWYNSIDADKDKFTVMLDMSADVHSNADHGVQSLEFHPDWD---LGVHTAFVLYTGEPKSVKTLPNEAAIKSMRPDGWGDD---NGGYKWWDQ---CPCLDCEGTGQNENGLLCE 151
BLAST of jgi.p|Trimin1|139405 vs. uniprot
Match: A0A835Z9F2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9F2_9STRA) HSP 1 Score: 102 bits (254), Expect = 1.940e-24 Identity = 57/149 (38.26%), Postives = 84/149 (56.38%), Query Frame = 1 Query: 4 LVVEQVWKFDDGIVDENMGVTHLDWIPGTEKVIVARKKGYLHMYDTIDAGVDEYKEVFDMNVD----------------VASLDDHGLLGFAFHPNFGKPGVGTNSVFILYSGQPKDVTLLPNDAAVAQLRPAGWGQGPPGTKGYAWDE 402 ++VE +W +D VD+ T + ++PG ++V+VA K G L +YD+ID+ V++YK + DM D V S+ DHG+ F FHP++ G +F+LY+G+PKDV LPN V RP +G GPPGT G W + Sbjct: 42 VLVELLWAWD---VDDRP--TMIKFVPGADQVMVAHKLGTLRLYDSIDSDVNDYKLLVDMTADLXXXXXXXXXXXXXXXVNSITDHGITSFEFHPDWDG---GVRKLFVLYTGEPKDVRKLPNYKVVLPYRPPAYGTGPPGTHGQTWGD 182
BLAST of jgi.p|Trimin1|139405 vs. uniprot
Match: A0A836CK08_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CK08_9STRA) HSP 1 Score: 100 bits (248), Expect = 1.540e-21 Identity = 49/123 (39.84%), Postives = 70/123 (56.91%), Query Frame = 1 Query: 97 VIVARKKGYLHMYDTIDAGVDEYKEVFDMNVDVASLDDHGLLGFAFHPNFGKPGVGTNSVFILYSGQPKDVTLLPNDAAVAQLRPAGWGQGPPGTKGYAWDESGYLCPALEKPLNNYGGKLCE 465 V+ + K G + ++ +I A + + DM DVA +DHGLL F FHP F G F+LY+G+PKDV +LPN+A + RP GWG GPPG G+ W++ C + N+ G +CE Sbjct: 2 VVTSHKSGMVRLHSSITADFADSTVMLDMTEDVADYNDHGLLSFHFHPQFAN---GVQKAFLLYTGEPKDVNVLPNNAEITPNRPDGWGAGPPGKMGFTWNDQ-CRCLDCDGIGPNHYGNICE 120
BLAST of jgi.p|Trimin1|139405 vs. uniprot
Match: A0A835YYP6_9STRA (Plastocyanin-like domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYP6_9STRA) HSP 1 Score: 63.9 bits (154), Expect = 5.560e-9 Identity = 43/126 (34.13%), Postives = 61/126 (48.41%), Query Frame = 1 Query: 4 LVVEQVWKFDDGIVDENMGVTHLDWIPGTEKVIVARKKGYLHMYDTIDAGVDEYKEVFDMNVDVASLDDHGLLGFAFHPNFGKPGVGTNS-VFILYSGQ-----PKDVTLLPNDAAVAQLRPAGWG 363 LVV+Q W+F T L + P + VI K G + +YD++D ++YK + ++ V S DDHG++GFAF P +G V N ++ Y Q T PN A V RP WG Sbjct: 70 LVVQQHWEF-----SPQEKATALRFSPISAHVITIHKHGEVRLYDSVDVDGEDYKTILNIEDKVYSADDHGMVGFAFDPQYG---VDRNQYAYLFYMSQLGPAHAVSKTTFPNPA-VGATRPLDWG 186 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|139405 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 12
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_8813 ID=mRNA_8813|Name=jgi.p|Trimin1|139405|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=465bp|location=Sequence derived from alignment at Contig_51:563523..564098+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. GACCTTGTCGTGGAGCAAGTATGGAAGTTCGACGACGGCATCGTGGACGAback to top protein sequence of jgi.p|Trimin1|139405 >Trimin1|139405|gw1.51.26.1 ID=Trimin1|139405|gw1.51.26.1|Name=jgi.p|Trimin1|139405|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=155bp DLVVEQVWKFDDGIVDENMGVTHLDWIPGTEKVIVARKKGYLHMYDTIDAback to top mRNA from alignment at Contig_51:563523..564098+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_8813 ID=mRNA_8813|Name=jgi.p|Trimin1|139405|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=576bp|location=Sequence derived from alignment at Contig_51:563523..564098+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_51:563523..564098+ >mRNA_8813 ID=mRNA_8813|Name=jgi.p|Trimin1|139405|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=465bp|location=Sequence derived from alignment at Contig_51:563523..564098+ (Tribonema minus UTEX_B_3156 )back to top |