mRNA_2321 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|137858
Unique NamemRNA_2321
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|137858 vs. uniprot
Match: A0A835YRD9_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRD9_9STRA)

HSP 1 Score: 268 bits (685), Expect = 6.300e-91
Identity = 135/135 (100.00%), Postives = 135/135 (100.00%), Query Frame = 1
Query:    1 LRTGLAVIRRLSPALRDDIPGATPYFMSPLAATVQTLRCDAPGQEVDIASDFTERNAPLHWRFAAAADSGAPAAAAARKRHFNSAAALRECVFAPGAVYTFDFYQHLFDPVSFELQLGVKRLRLADFLNGQPVQV 405
            LRTGLAVIRRLSPALRDDIPGATPYFMSPLAATVQTLRCDAPGQEVDIASDFTERNAPLHWRFAAAADSGAPAAAAARKRHFNSAAALRECVFAPGAVYTFDFYQHLFDPVSFELQLGVKRLRLADFLNGQPVQV
Sbjct:    1 LRTGLAVIRRLSPALRDDIPGATPYFMSPLAATVQTLRCDAPGQEVDIASDFTERNAPLHWRFAAAADSGAPAAAAARKRHFNSAAALRECVFAPGAVYTFDFYQHLFDPVSFELQLGVKRLRLADFLNGQPVQV 135          
BLAST of jgi.p|Trimin1|137858 vs. uniprot
Match: D8LTP0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTP0_ECTSI)

HSP 1 Score: 130 bits (327), Expect = 1.720e-32
Identity = 69/134 (51.49%), Postives = 91/134 (67.91%), Query Frame = 1
Query:    1 LRTGLAVIRRLSPALRDDIPGATPYFMSPLAATVQTLRCDAPGQEVDIASDFTERNAPLHWRFAAAADSGAPAAAAARKRHFNSAAALRECVFAPGAVYTFDFYQHLFDPVSFELQLGVKRLRLADFLNGQPVQ 402
            +R+  ++IRRLSPALR+DI G  PY +SPLAAT Q++R +APG EV I  D  E    L   F    DS  P++A  RK+ FN+   L+   F PG VYTFDFYQHL++ V+FEL LG ++++LAD+LN QP Q
Sbjct: 1041 IRSAFSLIRRLSPALREDITGERPYMVSPLAATAQSMRAEAPGDEVAIVGDLGEETGLLGESFM---DSRVPSSA--RKKFFNNPRNLKAYSFKPGVVYTFDFYQHLYNAVTFELDLGFRKVKLADYLNHQPAQ 1169          
BLAST of jgi.p|Trimin1|137858 vs. uniprot
Match: A0A7S3Y031_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y031_HETAK)

HSP 1 Score: 88.2 bits (217), Expect = 7.740e-19
Identity = 49/134 (36.57%), Postives = 73/134 (54.48%), Query Frame = 1
Query:    1 LRTGLAVIRRLSPALRDDIPGATPYFMSPLAATVQTLRCDAPGQEVDIASDFTERNAPLHWRFAAAADSGAPAAAAARKRHFNSAAALRECVFAPGAVYTFDFYQHLFDPVSFELQLGVKRLRLADFLNGQPVQ 402
            +R    +I++++P L+++I G  P  +SPL AT Q +  + PG E  +     E    L   FA   + G  A    RKR F+    L +    PG +YTFDFYQH+ D  + E+ LG ++  ++DFLN QPVQ
Sbjct:   54 VRAAFVLIKKIAPTLKEEISGPFPTLLSPLLATSQAVLVERPGAESPLHGALREDTKLLGGPFAV--EGGLTAKQ--RKRFFSRPQNLAKFTLQPGLIYTFDFYQHMLDITTMEINLGFRKFDISDFLNNQPVQ 183          
BLAST of jgi.p|Trimin1|137858 vs. uniprot
Match: A0A7R9TG78_9VIRI (Hypothetical protein n=1 Tax=Prasinoderma coloniale TaxID=156133 RepID=A0A7R9TG78_9VIRI)

HSP 1 Score: 89.4 bits (220), Expect = 2.310e-18
Identity = 57/136 (41.91%), Postives = 72/136 (52.94%), Query Frame = 1
Query:    1 LRTGLAVIRRLSPALRDDIPGATPYFMSPLAATVQTLRCDAPGQEVDIAS-DFTERNAPLHWRFAAAADSGAPAAAAARKRHFNSAAALRECVFAPGAVYTFDFYQHLFDPVSFELQLGVKRLRLADFLNGQPVQV 405
            L    A IR+L+P  R D+ G  P   + L AT QT+  +APG E DI   +F E N  L  RFA         +AA RKR   S        F   +VYTFDFYQHLFD  ++ L +G   L ++  L+GQPVQV
Sbjct:  234 LSAASAFIRKLAPGARIDLLGERPRVYALLGATAQTISVEAPGMEPDILGLEFAEENTLLGGRFARG-----DVSAAKRKRTLTSLERAAMYTFDTESVYTFDFYQHLFDAATYSLDVGFTTLGMSACLDGQPVQV 364          
BLAST of jgi.p|Trimin1|137858 vs. uniprot
Match: A0A7R9T0W8_9CHLO (Hypothetical protein n=2 Tax=Ostreococcus sp. 'lucimarinus' TaxID=242159 RepID=A0A7R9T0W8_9CHLO)

HSP 1 Score: 65.1 bits (157), Expect = 1.170e-9
Identity = 44/139 (31.65%), Postives = 69/139 (49.64%), Query Frame = 1
Query:    1 LRTGLAVIRRLSPALRDDIPGATPYFMSPLAATVQTLRCDAPGQEVDIA-SDFTERNAPLHWRFAAAADSGAPAAAAARKRHFNSAAALRECVFAPGAVYTFDFYQHLFDPVSFELQ---LGVKRLRLADFLNGQPVQV 405
            ++T + ++R ++P+LR  +    P   + L A+ Q +  D PG E DI    F E N+     FA+   + A      R+R        ++  F+   VYTFDFYQH+FDP +F L    L   R+ +A  +  QP Q+
Sbjct:  245 VKTLVHILRAMNPSLRMSLFARKPQVWTFLGASAQVISIDTPGDEPDITRGSFEENNSKFGGAFASGRLTSAQ-----RRRLLADVKKAKQYSFSTDDVYTFDFYQHVFDPKTFTLNILGLDAFRVDVARHVGDQPPQI 378          
BLAST of jgi.p|Trimin1|137858 vs. uniprot
Match: A0A0F7V129_TOXGV (Uncharacterized protein n=15 Tax=Toxoplasma gondii TaxID=5811 RepID=A0A0F7V129_TOXGV)

HSP 1 Score: 62.4 bits (150), Expect = 1.140e-8
Identity = 29/58 (50.00%), Postives = 40/58 (68.97%), Query Frame = 1
Query:  232 RKRHFNSAAALRECVFAPGAVYTFDFYQHLFDPVSFELQLGVKRLRLADFLNGQPVQV 405
            RKR       L+E VF+P  +YTFDF+Q++F P S+E  LGV RL LA +LN QP+++
Sbjct:  680 RKRLMGDRKLLKELVFSPDYIYTFDFFQNIFYPSSYEFDLGVMRLDLAPYLNRQPIEL 737          
BLAST of jgi.p|Trimin1|137858 vs. uniprot
Match: F0VAS9_NEOCL (Uncharacterized protein n=2 Tax=Neospora caninum (strain Liverpool) TaxID=572307 RepID=F0VAS9_NEOCL)

HSP 1 Score: 62.4 bits (150), Expect = 1.150e-8
Identity = 29/58 (50.00%), Postives = 40/58 (68.97%), Query Frame = 1
Query:  232 RKRHFNSAAALRECVFAPGAVYTFDFYQHLFDPVSFELQLGVKRLRLADFLNGQPVQV 405
            RKR       L+E VF+P  +YTFDF+Q++F P S+E  LGV RL LA +LN QP+++
Sbjct:  805 RKRLMGDRKILKELVFSPDYIYTFDFFQNIFYPSSYEFDLGVMRLDLAPYLNRQPIEL 862          
BLAST of jgi.p|Trimin1|137858 vs. uniprot
Match: A0A2A9M5H9_9APIC (Uncharacterized protein n=1 Tax=Besnoitia besnoiti TaxID=94643 RepID=A0A2A9M5H9_9APIC)

HSP 1 Score: 60.1 bits (144), Expect = 7.280e-8
Identity = 26/58 (44.83%), Postives = 39/58 (67.24%), Query Frame = 1
Query:  232 RKRHFNSAAALRECVFAPGAVYTFDFYQHLFDPVSFELQLGVKRLRLADFLNGQPVQV 405
            RK        L+E VF+P  +YTFDF+Q++F P S+E  LG+ R+ L+ FLN QP+++
Sbjct:  717 RKNMMGEKKLLKELVFSPDYIYTFDFFQNIFYPSSYEFDLGISRIDLSPFLNRQPIEL 774          
BLAST of jgi.p|Trimin1|137858 vs. uniprot
Match: A0A7S2KE43_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2KE43_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 2.260e-7
Identity = 43/135 (31.85%), Postives = 67/135 (49.63%), Query Frame = 1
Query:    1 LRTGLAVIRRLSPALRDDIPGATPYFMSPLAATVQTLRCDAPGQEVDIA-SDFTERNAPLHWRFAAAADSGAPAAAAARKRHFNSAAALRECVFAPGAVYTFDFYQHLFDPVSFELQLGVKRLRLADFLNGQPVQ 402
            L+T    I +++      +    P+  + L+ + Q +R D PG E +IA  +  E  + L   F    D   P A   RKR  ++ A  +E  F    VYTF+FYQ+LFD  S+ L LG  ++  +  L+ QP+Q
Sbjct:  267 LKTATNFIGKVAQGANIVVHTNQPHVEALLSGSSQVIRGDMPGNEPEIACKNLVEDCSVLGGAFK---DGNVPVAR--RKRILSNPARCKEYSFDCETVYTFEFYQNLFDASSYSLDLGFTKIGCSKVLDSQPIQ 396          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|137858 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A835YRD9_9STRA6.300e-91100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
D8LTP0_ECTSI1.720e-3251.49Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S3Y031_HETAK7.740e-1936.57Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7R9TG78_9VIRI2.310e-1841.91Hypothetical protein n=1 Tax=Prasinoderma colonial... [more]
A0A7R9T0W8_9CHLO1.170e-931.65Hypothetical protein n=2 Tax=Ostreococcus sp. 'luc... [more]
A0A0F7V129_TOXGV1.140e-850.00Uncharacterized protein n=15 Tax=Toxoplasma gondii... [more]
F0VAS9_NEOCL1.150e-850.00Uncharacterized protein n=2 Tax=Neospora caninum (... [more]
A0A2A9M5H9_9APIC7.280e-844.83Uncharacterized protein n=1 Tax=Besnoitia besnoiti... [more]
A0A7S2KE43_9STRA2.260e-731.85Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_5contigContig_5:727870..729328 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|137858|gw1.5.85.1
Max annot lvl2759|Eukaryota
EggNOG OGs2CZJM@1|root,2SAPD@2759|Eukaryota
Evalue2.82e-33
Seed ortholog2880.D8LTP0
Hectar predicted targeting categorymitochondrion
TranscriptId138180
TrackFilteredModels1
ProteinId137858
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|137858gene_2321Tribonema minus UTEX_B_3156 geneContig_5 727870..729328 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|137858Trimin1|137858|gw1.5.85.1Tribonema minus UTEX_B_3156 polypeptideContig_5 727870..729328 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_2321_2exon_2321_2Tribonema minus UTEX_B_3156 exonContig_5 727870..728139 -
exon_2321_1exon_2321_1Tribonema minus UTEX_B_3156 exonContig_5 729194..729328 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_2321CDS_2321Tribonema minus UTEX_B_3156 CDSContig_5 729194..729328 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_2321 ID=mRNA_2321|Name=jgi.p|Trimin1|137858|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=405bp|location=Sequence derived from alignment at Contig_5:727870..729328- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CTCAGGACGGGCCTGGCGGTCATCAGGCGGCTGTCGCCGGCGCTGCGCGA
CGACATCCCGGGCGCGACACCCTACTTCATGAGCCCGCTCGCGGCGACGG
TGCAGACGCTGCGCTGCGATGCGCCGGGGCAAGAGGTGGACATTGCCAGC
GACTTCACGGAGCGCAACGCGCCGCTGCACTGGCGCTTCGCGGCGGCGGC
GGACAGCGGCGCGCCCGCGGCGGCCGCGGCGCGCAAGCGGCACTTCAACT
CCGCCGCGGCGCTGCGCGAGTGCGTCTTTGCGCCGGGCGCCGTGTACACG
TTCGACTTCTACCAGCACCTGTTCGACCCGGTGTCGTTCGAGCTGCAGCT
GGGGGTGAAGCGGCTGCGCCTCGCGGACTTTCTGAACGGGCAGCCCGTGC
AGGTG
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protein sequence of jgi.p|Trimin1|137858

>Trimin1|137858|gw1.5.85.1 ID=Trimin1|137858|gw1.5.85.1|Name=jgi.p|Trimin1|137858|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=135bp
LRTGLAVIRRLSPALRDDIPGATPYFMSPLAATVQTLRCDAPGQEVDIAS
DFTERNAPLHWRFAAAADSGAPAAAAARKRHFNSAAALRECVFAPGAVYT
FDFYQHLFDPVSFELQLGVKRLRLADFLNGQPVQV
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mRNA from alignment at Contig_5:727870..729328-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2321 ID=mRNA_2321|Name=jgi.p|Trimin1|137858|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1459bp|location=Sequence derived from alignment at Contig_5:727870..729328- (Tribonema minus UTEX_B_3156 )
CTCAGGACGGGCCTGGCGGTCATCAGGCGGCTGTCGCCGGCGCTGCGCGA CGACATCCCGGGCGCGACACCCTACTTCATGAGCCCGCTCGCGGCGACGG TGCAGACGCTGCGCTGCGATGCGCCGGGGCAAGAGGTCTGTTTGGCAAAA AAACATGGTCTCAAGGCAGCTTTGAATAACAGTACCTTGCAAACAATCCT GGGTTGCACTTGCATGGTGCGCGTGAGTCTCGAGTAGAGTCTTGGGCTGA GCTTCGGCTCAAGTCGTACTTCATGAGCCTGCTCGCGGCAATTGTGCAGA CGCTCCGCTGCAATGCACTGGGACACGAGGTCCGTCCGGTTCAAGACAGC AAGCACCACATGGTGTTCAAAGCGAGCAGTAAAACAATTTGAGTGTTACC TCCTTGTAAACAACAATTGCGGAGATCTACTTGCATGCAGTTAGAGGAGT TTGTGAACAGGAAGGTACTCTCTCGTAGACAACAAAAGCGTTGATCTACT TGCATGGTGCGCAAGTATCGAGTTGAGTCGTGGGCGCCGCATCGTGCTTC CGTGAGCGCTGCGCTGCGACTCGCCGTGACACGAGGCAAGACGACGATGA GCGTTGCGTTCTCTTGAGCGCTGCATTGTGCTGCGCCACGCCGTAATACC TCATGGGCCCGAGCCTGCCCGCGGCGGCGGTGCAGACGCTTCGCTGCGGC GCGACGGGAAGAGGTTGTGATCGCCAAGAAGATGTCTGTGGTGCCTGTGA CCCTGAGTCAGCACACTTCGGAGCATGTGAAGAGCGCATGCTCCCAGCGC AGCAGCTGCGCAGCGGGGACGGCAGGACAGGAACGCATGACGGCCCGGGG CTAGTGTGAGCGTTGGGGTTCAGTCAGCATCAGCATAACGTTAGAGGCTA GGCCTATGTGAGGTCGTGGTTGAATTAAGTGGCTGGGCTGTTGTCACCAT CCACCCGCTTGACACACCCGCGCTGCCGCTGCTGCCGTCGCCGCCGCTGC CGTTGCGCTGCACCATGTGGACATCGCCAGCGACTTCACGGAGCGCAATG CGCCGCTGCACTGGCGCTTCGCGGCAGCGGCGGACGGTCAGGATAAAATT GATTAATTTGACTGGGCTGTGTCACCTTCAACACGCTTAACGCACCCCCG CCGCCGCTGCAACGGCCGTTGCCGCCGCCGCTGCGCCAGGTGGACATTGC CAGCGACTTCACGGAGCGCAACGCGCCGCTGCACTGGCGCTTCGCGGCGG CGGCGGACAGCGGCGCGCCCGCGGCGGCCGCGGCGCGCAAGCGGCACTTC AACTCCGCCGCGGCGCTGCGCGAGTGCGTCTTTGCGCCGGGCGCCGTGTA CACGTTCGACTTCTACCAGCACCTGTTCGACCCGGTGTCGTTCGAGCTGC AGCTGGGGGTGAAGCGGCTGCGCCTCGCGGACTTTCTGAACGGGCAGCCC GTGCAGGTG
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Coding sequence (CDS) from alignment at Contig_5:727870..729328-

>mRNA_2321 ID=mRNA_2321|Name=jgi.p|Trimin1|137858|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=405bp|location=Sequence derived from alignment at Contig_5:727870..729328- (Tribonema minus UTEX_B_3156 )
CTCAGGACGGGCCTGGCGGTCATCAGGCGGCTGTCGCCGGCGCTGCGCGA
CGACATCCCGGGCGCGACACCCTACTTCATGAGCCCGCTCGCGGCGACGG
TGCAGACGCTGCGCTGCGATGCGCCGGGGCAAGAGGTGGACATTGCCAGC
GACTTCACGGAGCGCAACGCGCCGCTGCACTGGCGCTTCGCGGCGGCGGC
GGACAGCGGCGCGCCCGCGGCGGCCGCGGCGCGCAAGCGGCACTTCAACT
CCGCCGCGGCGCTGCGCGAGTGCGTCTTTGCGCCGGGCGCCGTGTACACG
TTCGACTTCTACCAGCACCTGTTCGACCCGGTGTCGTTCGAGCTGCAGCT
GGGGGTGAAGCGGCTGCGCCTCGCGGACTTTCTGAACGGGCAGCCCGTGC
AGGTG
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