mRNA_2321 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|137858 vs. uniprot
Match: A0A835YRD9_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRD9_9STRA) HSP 1 Score: 268 bits (685), Expect = 6.300e-91 Identity = 135/135 (100.00%), Postives = 135/135 (100.00%), Query Frame = 1 Query: 1 LRTGLAVIRRLSPALRDDIPGATPYFMSPLAATVQTLRCDAPGQEVDIASDFTERNAPLHWRFAAAADSGAPAAAAARKRHFNSAAALRECVFAPGAVYTFDFYQHLFDPVSFELQLGVKRLRLADFLNGQPVQV 405 LRTGLAVIRRLSPALRDDIPGATPYFMSPLAATVQTLRCDAPGQEVDIASDFTERNAPLHWRFAAAADSGAPAAAAARKRHFNSAAALRECVFAPGAVYTFDFYQHLFDPVSFELQLGVKRLRLADFLNGQPVQV Sbjct: 1 LRTGLAVIRRLSPALRDDIPGATPYFMSPLAATVQTLRCDAPGQEVDIASDFTERNAPLHWRFAAAADSGAPAAAAARKRHFNSAAALRECVFAPGAVYTFDFYQHLFDPVSFELQLGVKRLRLADFLNGQPVQV 135
BLAST of jgi.p|Trimin1|137858 vs. uniprot
Match: D8LTP0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTP0_ECTSI) HSP 1 Score: 130 bits (327), Expect = 1.720e-32 Identity = 69/134 (51.49%), Postives = 91/134 (67.91%), Query Frame = 1 Query: 1 LRTGLAVIRRLSPALRDDIPGATPYFMSPLAATVQTLRCDAPGQEVDIASDFTERNAPLHWRFAAAADSGAPAAAAARKRHFNSAAALRECVFAPGAVYTFDFYQHLFDPVSFELQLGVKRLRLADFLNGQPVQ 402 +R+ ++IRRLSPALR+DI G PY +SPLAAT Q++R +APG EV I D E L F DS P++A RK+ FN+ L+ F PG VYTFDFYQHL++ V+FEL LG ++++LAD+LN QP Q Sbjct: 1041 IRSAFSLIRRLSPALREDITGERPYMVSPLAATAQSMRAEAPGDEVAIVGDLGEETGLLGESFM---DSRVPSSA--RKKFFNNPRNLKAYSFKPGVVYTFDFYQHLYNAVTFELDLGFRKVKLADYLNHQPAQ 1169
BLAST of jgi.p|Trimin1|137858 vs. uniprot
Match: A0A7S3Y031_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y031_HETAK) HSP 1 Score: 88.2 bits (217), Expect = 7.740e-19 Identity = 49/134 (36.57%), Postives = 73/134 (54.48%), Query Frame = 1 Query: 1 LRTGLAVIRRLSPALRDDIPGATPYFMSPLAATVQTLRCDAPGQEVDIASDFTERNAPLHWRFAAAADSGAPAAAAARKRHFNSAAALRECVFAPGAVYTFDFYQHLFDPVSFELQLGVKRLRLADFLNGQPVQ 402 +R +I++++P L+++I G P +SPL AT Q + + PG E + E L FA + G A RKR F+ L + PG +YTFDFYQH+ D + E+ LG ++ ++DFLN QPVQ Sbjct: 54 VRAAFVLIKKIAPTLKEEISGPFPTLLSPLLATSQAVLVERPGAESPLHGALREDTKLLGGPFAV--EGGLTAKQ--RKRFFSRPQNLAKFTLQPGLIYTFDFYQHMLDITTMEINLGFRKFDISDFLNNQPVQ 183
BLAST of jgi.p|Trimin1|137858 vs. uniprot
Match: A0A7R9TG78_9VIRI (Hypothetical protein n=1 Tax=Prasinoderma coloniale TaxID=156133 RepID=A0A7R9TG78_9VIRI) HSP 1 Score: 89.4 bits (220), Expect = 2.310e-18 Identity = 57/136 (41.91%), Postives = 72/136 (52.94%), Query Frame = 1 Query: 1 LRTGLAVIRRLSPALRDDIPGATPYFMSPLAATVQTLRCDAPGQEVDIAS-DFTERNAPLHWRFAAAADSGAPAAAAARKRHFNSAAALRECVFAPGAVYTFDFYQHLFDPVSFELQLGVKRLRLADFLNGQPVQV 405 L A IR+L+P R D+ G P + L AT QT+ +APG E DI +F E N L RFA +AA RKR S F +VYTFDFYQHLFD ++ L +G L ++ L+GQPVQV Sbjct: 234 LSAASAFIRKLAPGARIDLLGERPRVYALLGATAQTISVEAPGMEPDILGLEFAEENTLLGGRFARG-----DVSAAKRKRTLTSLERAAMYTFDTESVYTFDFYQHLFDAATYSLDVGFTTLGMSACLDGQPVQV 364
BLAST of jgi.p|Trimin1|137858 vs. uniprot
Match: A0A7R9T0W8_9CHLO (Hypothetical protein n=2 Tax=Ostreococcus sp. 'lucimarinus' TaxID=242159 RepID=A0A7R9T0W8_9CHLO) HSP 1 Score: 65.1 bits (157), Expect = 1.170e-9 Identity = 44/139 (31.65%), Postives = 69/139 (49.64%), Query Frame = 1 Query: 1 LRTGLAVIRRLSPALRDDIPGATPYFMSPLAATVQTLRCDAPGQEVDIA-SDFTERNAPLHWRFAAAADSGAPAAAAARKRHFNSAAALRECVFAPGAVYTFDFYQHLFDPVSFELQ---LGVKRLRLADFLNGQPVQV 405 ++T + ++R ++P+LR + P + L A+ Q + D PG E DI F E N+ FA+ + A R+R ++ F+ VYTFDFYQH+FDP +F L L R+ +A + QP Q+ Sbjct: 245 VKTLVHILRAMNPSLRMSLFARKPQVWTFLGASAQVISIDTPGDEPDITRGSFEENNSKFGGAFASGRLTSAQ-----RRRLLADVKKAKQYSFSTDDVYTFDFYQHVFDPKTFTLNILGLDAFRVDVARHVGDQPPQI 378
BLAST of jgi.p|Trimin1|137858 vs. uniprot
Match: A0A0F7V129_TOXGV (Uncharacterized protein n=15 Tax=Toxoplasma gondii TaxID=5811 RepID=A0A0F7V129_TOXGV) HSP 1 Score: 62.4 bits (150), Expect = 1.140e-8 Identity = 29/58 (50.00%), Postives = 40/58 (68.97%), Query Frame = 1 Query: 232 RKRHFNSAAALRECVFAPGAVYTFDFYQHLFDPVSFELQLGVKRLRLADFLNGQPVQV 405 RKR L+E VF+P +YTFDF+Q++F P S+E LGV RL LA +LN QP+++ Sbjct: 680 RKRLMGDRKLLKELVFSPDYIYTFDFFQNIFYPSSYEFDLGVMRLDLAPYLNRQPIEL 737
BLAST of jgi.p|Trimin1|137858 vs. uniprot
Match: F0VAS9_NEOCL (Uncharacterized protein n=2 Tax=Neospora caninum (strain Liverpool) TaxID=572307 RepID=F0VAS9_NEOCL) HSP 1 Score: 62.4 bits (150), Expect = 1.150e-8 Identity = 29/58 (50.00%), Postives = 40/58 (68.97%), Query Frame = 1 Query: 232 RKRHFNSAAALRECVFAPGAVYTFDFYQHLFDPVSFELQLGVKRLRLADFLNGQPVQV 405 RKR L+E VF+P +YTFDF+Q++F P S+E LGV RL LA +LN QP+++ Sbjct: 805 RKRLMGDRKILKELVFSPDYIYTFDFFQNIFYPSSYEFDLGVMRLDLAPYLNRQPIEL 862
BLAST of jgi.p|Trimin1|137858 vs. uniprot
Match: A0A2A9M5H9_9APIC (Uncharacterized protein n=1 Tax=Besnoitia besnoiti TaxID=94643 RepID=A0A2A9M5H9_9APIC) HSP 1 Score: 60.1 bits (144), Expect = 7.280e-8 Identity = 26/58 (44.83%), Postives = 39/58 (67.24%), Query Frame = 1 Query: 232 RKRHFNSAAALRECVFAPGAVYTFDFYQHLFDPVSFELQLGVKRLRLADFLNGQPVQV 405 RK L+E VF+P +YTFDF+Q++F P S+E LG+ R+ L+ FLN QP+++ Sbjct: 717 RKNMMGEKKLLKELVFSPDYIYTFDFFQNIFYPSSYEFDLGISRIDLSPFLNRQPIEL 774
BLAST of jgi.p|Trimin1|137858 vs. uniprot
Match: A0A7S2KE43_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2KE43_9STRA) HSP 1 Score: 58.5 bits (140), Expect = 2.260e-7 Identity = 43/135 (31.85%), Postives = 67/135 (49.63%), Query Frame = 1 Query: 1 LRTGLAVIRRLSPALRDDIPGATPYFMSPLAATVQTLRCDAPGQEVDIA-SDFTERNAPLHWRFAAAADSGAPAAAAARKRHFNSAAALRECVFAPGAVYTFDFYQHLFDPVSFELQLGVKRLRLADFLNGQPVQ 402 L+T I +++ + P+ + L+ + Q +R D PG E +IA + E + L F D P A RKR ++ A +E F VYTF+FYQ+LFD S+ L LG ++ + L+ QP+Q Sbjct: 267 LKTATNFIGKVAQGANIVVHTNQPHVEALLSGSSQVIRGDMPGNEPEIACKNLVEDCSVLGGAFK---DGNVPVAR--RKRILSNPARCKEYSFDCETVYTFEFYQNLFDASSYSLDLGFTKIGCSKVLDSQPIQ 396 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|137858 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 9
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_2321 ID=mRNA_2321|Name=jgi.p|Trimin1|137858|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=405bp|location=Sequence derived from alignment at Contig_5:727870..729328- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. CTCAGGACGGGCCTGGCGGTCATCAGGCGGCTGTCGCCGGCGCTGCGCGAback to top protein sequence of jgi.p|Trimin1|137858 >Trimin1|137858|gw1.5.85.1 ID=Trimin1|137858|gw1.5.85.1|Name=jgi.p|Trimin1|137858|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=135bp LRTGLAVIRRLSPALRDDIPGATPYFMSPLAATVQTLRCDAPGQEVDIASback to top mRNA from alignment at Contig_5:727870..729328- Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_2321 ID=mRNA_2321|Name=jgi.p|Trimin1|137858|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1459bp|location=Sequence derived from alignment at Contig_5:727870..729328- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_5:727870..729328- >mRNA_2321 ID=mRNA_2321|Name=jgi.p|Trimin1|137858|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=405bp|location=Sequence derived from alignment at Contig_5:727870..729328- (Tribonema minus UTEX_B_3156 )back to top |