mRNA_2313 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|72329
Unique NamemRNA_2313
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
[Close]
BLAST of jgi.p|Trimin1|72329 vs. uniprot
Match: A0A835YSA6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSA6_9STRA)

HSP 1 Score: 149 bits (375), Expect = 1.320e-44
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 3 
Query:   78 MMAGLGLLTLGLMLAILAWRLIVAQAQTTPDKMPLSTFATPKPKPMPEPIAPVADPTPRDDDHETTDSSPNEGAATSAS 314
            MMAGLGLLTLGLMLAILAWRLIVAQAQTTPDKMPLSTFATPKPKPMPEPIAPVADPTPRDDDHETTDSSPNEGAATSAS
Sbjct:    1 MMAGLGLLTLGLMLAILAWRLIVAQAQTTPDKMPLSTFATPKPKPMPEPIAPVADPTPRDDDHETTDSSPNEGAATSAS 79
[Close]
BLAST of jgi.p|Trimin1|72329 vs. uniprot
Match: A0A835YQV8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQV8_9STRA)

HSP 1 Score: 96.3 bits (238), Expect = 1.050e-20
Identity = 53/80 (66.25%), Postives = 58/80 (72.50%), Query Frame = 3 
Query:    3 RTINGLYVDAVYETGCRDINAALGFMMAGLGLLTLGLMLAILAWRLIVAQAQTTPDKMPLSTFATPKPKPMPE-PIAPVA 239
            RTINGLYV AVY+TGC DIN ALG+MM GLG+L+ GL+LAIL WR I AQAQ   DK P  TFATPK    P  P A VA
Sbjct:  492 RTINGLYVSAVYQTGCHDINYALGWMMLGLGMLSSGLVLAILTWRFIAAQAQNALDKQPRMTFATPKAATQPSAPAATVA 571
[Close]
BLAST of jgi.p|Trimin1|72329 vs. uniprot
Match: A0A835Z969_9STRA (Tweety-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z969_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 9.200e-10
Identity = 30/52 (57.69%), Postives = 43/52 (82.69%), Query Frame = 3 
Query:    3 RTINGLYVDAVYETGCRDINAALGFMMAGLGLLTLGLMLAILAWRLIVAQAQ 158
            RTINGL+VDAV++T C D+N ++G +  GL +L++ LMLA+L WRL+VAQA+
Sbjct:  419 RTINGLFVDAVHQTACDDLNNSIGLLFLGLLMLSVPLMLAVLVWRLMVAQAE 470
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|72329 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A835YSA6_9STRA1.320e-44100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YQV8_9STRA1.050e-2066.25Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z969_9STRA9.200e-1057.69Tweety-domain-containing protein n=1 Tax=Tribonema... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_5contigContig_5:653828..656610 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|72329|CE72328_6
Hectar predicted targeting categorysignal peptide
TranscriptId72651
TrackFilteredModels1
ProteinId72329
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|72329gene_2313Tribonema minus UTEX_B_3156 geneContig_5 653828..656610 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|72329Trimin1|72329|CE72328_6Tribonema minus UTEX_B_3156 polypeptideContig_5 653890..655160 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_2313_3exon_2313_3Tribonema minus UTEX_B_3156 exonContig_5 653828..653985 -
exon_2313_2exon_2313_2Tribonema minus UTEX_B_3156 exonContig_5 655017..655196 -
exon_2313_1exon_2313_1Tribonema minus UTEX_B_3156 exonContig_5 656570..656610 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_2313UTR3_2313Tribonema minus UTEX_B_3156 three_prime_UTRContig_5 653828..653889 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_2313CDS_2313Tribonema minus UTEX_B_3156 CDSContig_5 655017..655160 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_2313UTR5_2313Tribonema minus UTEX_B_3156 five_prime_UTRContig_5 656570..656610 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_2313 ID=mRNA_2313|Name=jgi.p|Trimin1|72329|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=379bp|location=Sequence derived from alignment at Contig_5:653828..656610- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GCCGCACCATCAACGGCCTCTACGTCGACGCCGTCTATGAGACGGGCTGC
CGCGACATCAACGCTGCGCTGGGCTTCATGATGGCGGGCCTCGGCCTGCT
GACGCTGGGCCTCATGCTGGCGATCCTGGCGTGGCGCCTCATCGTCGCGC
AGGCGCAGACGACGCCCGACAAGATGCCGCTCTCGACGTTCGCGACACCG
AAACCCAAGCCCATGCCGGAGCCCATCGCGCCCGTCGCGGACCCGACGCC
GCGCGACGACGACCACGAGACGACAGACTCGTCGCCGAACGAGGGCGCCG
CGACGTCCGCCTCCTGAGCGCTGCTGCTCCCCCTCTCAGCAACACGATCA
TTCGGGGGGTTCGGCCACGCGGGGCGCGC
back to top

protein sequence of jgi.p|Trimin1|72329

>Trimin1|72329|CE72328_6 ID=Trimin1|72329|CE72328_6|Name=jgi.p|Trimin1|72329|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=80bp
MMAGLGLLTLGLMLAILAWRLIVAQAQTTPDKMPLSTFATPKPKPMPEPI
APVADPTPRDDDHETTDSSPNEGAATSAS*
back to top

mRNA from alignment at Contig_5:653828..656610-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2313 ID=mRNA_2313|Name=jgi.p|Trimin1|72329|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2783bp|location=Sequence derived from alignment at Contig_5:653828..656610- (Tribonema minus UTEX_B_3156 )
GCCGCACCATCAACGGCCTCTACGTCGACGCCGTCTATGAGGTGAGCGCT
GAGCGCTGCTGCAGGGTCCTCTCGCTTCTAGAAGTGCCTTGATTGTTGGC
GAGGCCTCTACGTGGACGCCGTCTATGAGGTGAGCGCTGCCGCAGAGTCT
TCTTGCTTCCAGAAGTGCCTTGATTGGAAGTGAGGCACGCTGGCGCACGA
GGACTTGAGCTGCCGCGCTATGTGCGGCCTCTGCGTCGGTTTCGTTTATG
AGGCAAGGTCTGGTGCAAAAGTTGTTTACTTGCACAGAAGTGTCTTGGCT
GGAAGTGAACCATGCAGCGTGGGAGGACTTCAGCTGCCGCACCATCAGTG
GCCTTCAGTGACGTGAGCCCATGTTACAAGACCCAGACCTCACCTTCAAC
CTATGCCAACAGCCTTGACGATCTCAAACCCTACATGTTGACATCGTCTA
TGACGTGAGCCATGTTACAATACCCGAAACCCTCAATCCAAACCACACCA
CTGGCCTTGACGCAGACCCTAGATAATCATCGGCCTCTGCGCGCGAATGC
CGTCTCCTTTTTTTGCTAGCACCGGAAAGCCCATCAGGTTGTGTATCGCC
CTGCCTGCCCGTCGCAGACCGGCTGCCGCGACGTCAACGCAGCCTGCTTC
AACACGATAAACATTTAGAGATAGCTGCATAACATGCCAGTTGAGGGAAT
AATGCATGGCAGTGCTCAAGCACGTCGCCGCCTCGCTCGCCCCCGGCTGC
CGCGACGTCAACGCCGCGCTCGGCTTCATGCTCACAGGCAGCGCAGCCTG
CCCTCACACTTTCTTTCTGATCACACAGGTGTCGCCCTCGCCTCACTTGA
AGCGCACTGAGCCTGATGTCTCTGTCCCCGCCGCTGCAGATGGGCTGCCG
CGACATCACTGCCGCGCTCGACTCCATGATGGCGGGCCTCGGCCTGCTCT
CGCCTTTTCTGATGCAGCACGCACCGCTCTCGCCTCGTCCAGCGCCACAA
AAAATGCTCAGATACCGCTCAGCTGTGACATCTCTATCTCCGCCGCCGCT
GCAGACGGGCTGCCGTGACATCAGCGCCGCGCTCGGCTTCATGATAGCGG
GCAGCTGAGCCTACCCTCGCGCTTTCTGATGCCACAGGCGGCGCCCTCGC
CTCACTCGAGACGCATGAAGTCCGCTGCTGACCTGTGATACTTTAACATC
TCTATTCCCGCCGCTGCCGCAGACGGGCTGCCGCGACATCAATGCCGCGC
TCGGCTCCGTGATGGTGGGCCTCGGCCTGCTCTCGCCTTTTCTTATACAG
CGCGCACCGCTCTCGCCTCGTCCAGCGCCACGCAAAGTGCTCAAATACCG
CTGAGCTGTGATTTCTATCTCCGCCGCCACTAACCGAGGAGTCTCCCTCT
CGCCATCGCTGCAGACGGGCTGCCGCGACATCAACGCTGCGCTGGGCTTC
ATGATGGCGGGCCTCGGCCTGCTGACGCTGGGCCTCATGCTGGCGATCCT
GGCGTGGCGCCTCATCGTCGCGCAGGCGCAGACGACGCCCGACAAGATGC
CGCTCTCGACGTTCGCGACACCGAAACCCAAGCCCATGCCGGAGGTACGC
ATTGTGCCCCCCCCCCCCCCCCTCCCCCTTCCTCGTGCGCGTCTTCACTG
CATTCACGCGTCTTCATGCGTCGCCGCGATTCGACACGCTGAAGGCCACC
GCTGCTGCTCCGCATGACTGAGGACGCCCAGCGTCAAGGCGCACATCATT
TCTTTTTTTCCGTCGGGAGTTGGTTTGTGAGCCCATGCCGGAGGTACGCA
TCGCTTCCTCCCCCTCCTGCACGCCTTCACTCCATGATGAGTCTTCGTTC
GGTTCTAGAGGTTCCAACCAGAGTTGTGGTTGGGTGATTCGGTGCTAGGT
GTTCCGACCGGATGTCAGGGTGGATGATTGAGGACGAATTAAGATTTCGA
TCGACGATCGGATTATTTTTTGACAATTATCGAACGCATCGCGCGTCCCC
CCCCCCCCCCTCTTGCGCGCCTTTTCCATCCATGAGTCTTCATGTGCCGC
CACGACTCAATGCTCTTATGGCCGCTGCCGCCCTGCGCAGGATTTTTGTC
TTGGCTGCGTGTGTTGTGAGGGCATGAGAAGAAAACTGTTGACCACCCGT
TGCAGGCTTTTGCCGTGCATGCGCCGCTTCCGACTGTTGTGTTCCCTGCC
TGCAAACCCCGCCAGTCAGACCCGACGCGCTTCTCACCCCCCCCCCCCTG
TAATTGCTGCCAACAAGAGCGTTGCTTTGAACATCTTCTCAGCGGTTCAG
CAGTGAAAGCGTTCCTTTTGTTCCCCCCACTGCCACTGCTTGTGCGCGAT
TCTCAGCCCCCCCCCCCCCACACCGGTCCAGCAGAAATAGCTTTCCTCCT
GTTCCCCCCCCTGCCACTGCTTGTGCGCGATTCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCGCGACGCCGCGCGCCGACCGATGCTCTCTCGCAGCTCGT
GTCGTTGGTGCGCCGCATCTGACTGCTGTGTTCCCCGCGCGCGAACCCCT
GTTGGTCAAACACGACGACGCGATTTTCAACCCACCCCACCCACCCCCCT
TCCCCCTTTGCCGCTGCTCGCGCAGCCCATCGCGCCCGTCGCGGACCCGA
CGCCGCGCGACGACGACCACGAGACGACAGACTCGTCGCCGAACGAGGGC
GCCGCGACGTCCGCCTCCTGAGCGCTGCTGCTCCCCCTCTCAGCAACACG
ATCATTCGGGGGGTTCGGCCACGCGGGGCGCGC
back to top

Coding sequence (CDS) from alignment at Contig_5:653828..656610-

>mRNA_2313 ID=mRNA_2313|Name=jgi.p|Trimin1|72329|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=240bp|location=Sequence derived from alignment at Contig_5:653828..656610- (Tribonema minus UTEX_B_3156 )
ATGATGGCGGGCCTCGGCCTGCTGACGCTGGGCCTCATGCTGGCGATCCT
GGCGTGGCGCCTCATCGTCGCGCAGGCGCAGACGACGCCCGACAAGATGC
CGCTCTCGACGTTCGCGACACCGAAACCCAAGCCCATGCCGGAGCCCATC
GCGCCCGTCGCGGACCCGACGCCGCGCGACGACGACCACGAGACGACAGA
CTCGTCGCCGAACGAGGGCGCCGCGACGTCCGCCTCCTGA
back to top