mRNA_10426 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|134327
Unique NamemRNA_10426
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|134327 vs. uniprot
Match: A0A835YQW3_9STRA (Zot domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQW3_9STRA)

HSP 1 Score: 634 bits (1634), Expect = 1.710e-229
Identity = 319/319 (100.00%), Postives = 319/319 (100.00%), Query Frame = 1
Query:    1 LYLNTQEPFCLVAVDVQGAGKSHTVGLVVENCLLQFESMITSALTTTLVMHYDEDPDLACELATVTEPNGDLPLNADIAIREVTVLVSPNYYQQMRNKYEGVPRTTVRPLLLDWDALSADQLKVIMQLSSDQISSNSEPLYFGALLDKLAEYQRDQSMPPYQDFRELCSGGGLDFTNAQSLPLEMRLRLLDTLVHQSAKNEEYRDHKTFLEVMQVSGVVIAHLSDPLISSKKANCVFQVLLQQFCGKEWHRTPVHRKLVIFDEAHKYISDRDSDGLAHEMLKVFRNMRHQGMRIIVSTQSPAILPHEMLALVSVMVVHR 957
            LYLNTQEPFCLVAVDVQGAGKSHTVGLVVENCLLQFESMITSALTTTLVMHYDEDPDLACELATVTEPNGDLPLNADIAIREVTVLVSPNYYQQMRNKYEGVPRTTVRPLLLDWDALSADQLKVIMQLSSDQISSNSEPLYFGALLDKLAEYQRDQSMPPYQDFRELCSGGGLDFTNAQSLPLEMRLRLLDTLVHQSAKNEEYRDHKTFLEVMQVSGVVIAHLSDPLISSKKANCVFQVLLQQFCGKEWHRTPVHRKLVIFDEAHKYISDRDSDGLAHEMLKVFRNMRHQGMRIIVSTQSPAILPHEMLALVSVMVVHR
Sbjct:    1 LYLNTQEPFCLVAVDVQGAGKSHTVGLVVENCLLQFESMITSALTTTLVMHYDEDPDLACELATVTEPNGDLPLNADIAIREVTVLVSPNYYQQMRNKYEGVPRTTVRPLLLDWDALSADQLKVIMQLSSDQISSNSEPLYFGALLDKLAEYQRDQSMPPYQDFRELCSGGGLDFTNAQSLPLEMRLRLLDTLVHQSAKNEEYRDHKTFLEVMQVSGVVIAHLSDPLISSKKANCVFQVLLQQFCGKEWHRTPVHRKLVIFDEAHKYISDRDSDGLAHEMLKVFRNMRHQGMRIIVSTQSPAILPHEMLALVSVMVVHR 319          
BLAST of jgi.p|Trimin1|134327 vs. uniprot
Match: A0A835ZH89_9STRA (DUF853 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZH89_9STRA)

HSP 1 Score: 395 bits (1014), Expect = 4.160e-134
Identity = 210/320 (65.62%), Postives = 246/320 (76.88%), Query Frame = 1
Query:    1 LYLNTQEPFCLVAVDVQGAGKSHTVGLVVENCLLQFESMITSALTTTLVMHYDEDPDLACELATVTEPNGDLPLNADIAIREVTVLVSPNYYQQM--RNKYEGVPRTTVRPLLLDWDALSADQLKVIMQLSSDQISSNSEPLYFGALLDKLAEYQRDQSMPPYQDFRE-LCSGGGLDFTNAQSLPLEMRLRLLDTLVHQSAKN-EEYRDHKTFLEVMQ----VSGVVIAHLSDPLISSKKANCVFQVLLQQFCGKEWHRT-PVHRKLVIFDEAHKYISDRDSDGLAHEMLKVFRNMRHQGMRIIVSTQSPAILPHEMLAL 933
            LYLNTQE FCL+AV VQ  GKSHTVG VVENC+LQ   +I SA T T VMHYDED    CEL+T+T    D P + D+ +R  TVLVSPNY+QQM  + KY GVP T+V+PLLLDWD LSADQLK+IMQLS DQ+SS+S P YFGALL+KL EYQR +SMPPY +FRE L S     FT++Q  PLE+RL+LLD +V QSAKN  +Y + KTF++ MQ      G+VIA LSDPLIS ++ANC+FQV+LQQFC KEW+   PV RKLV+FDEAHKYIS+ D DGLAHEMLKV R MR  GMRI+VSTQSPA LPHEMLAL
Sbjct:   67 LYLNTQERFCLLAVGVQNGGKSHTVGAVVENCMLQLPGIIHSAPTATSVMHYDEDTTAQCELSTLTAAGADTPRSVDVFVRNTTVLVSPNYFQQMLVQEKYRGVPNTSVQPLLLDWDVLSADQLKIIMQLSFDQVSSSSVPHYFGALLNKLPEYQRCESMPPYHNFREQLSSKSSTGFTSSQMEPLELRLKLLDAVVQQSAKNVRDYSNRKTFMDAMQDAYDTQGIVIADLSDPLISKQQANCIFQVVLQQFCNKEWNGDKPVRRKLVVFDEAHKYISN-DGDGLAHEMLKVVRTMRLTGMRIVVSTQSPAELPHEMLAL 385          
BLAST of jgi.p|Trimin1|134327 vs. uniprot
Match: A0A4P9WBJ6_9FUNG (Uncharacterized protein n=1 Tax=Blyttiomyces helicus TaxID=388810 RepID=A0A4P9WBJ6_9FUNG)

HSP 1 Score: 214 bits (546), Expect = 8.950e-63
Identity = 128/329 (38.91%), Postives = 191/329 (58.05%), Query Frame = 1
Query:    1 LYLNTQEPFCLVAVDVQGAGKSHTVGLVVENCLLQFESMITSA--LTTTLVMHYDEDPDLACELATVTEPNGDLPLNADIAIRE-VTVLVSPNYYQQMRNKYEGVPRTTVRPLLLDWDALSADQLKVIMQLSSDQISSNSEPLYFGALLDKLAEYQRDQSMPPYQDFRELCSGGGLDFTNAQSLPLEMRLRLLDTLVHQSAKNEEYRDHKTFLEVMQVSGVVIAHLSDPLISSKKANCVFQVLLQQF------CGKEWHRTPVHRKLVIFDEAHKYIS-DRDSDGLAHEMLKVFRNMRHQGMRIIVSTQSPAILPHEMLALVSVMVVHR 957
            +YLNT  PFCLVAV VQGAGKSH+V  V+ENC+L     IT A     TLV HYD D    C+ AT+T PN    +   + + E + +LVSP++Y Q +  Y   P   VRPLL  W  ++A  +K +M++  D+      PLY G++L  L   Q++ S P    F+E      LDF+  QS PL+ RL L+++L+ +S++N    +     +      VVI  L+DP++S+ ++  +F+V+L++F      CGK          LV+ DEAHK+++    SD L   ++++ R MRH GMR++VS+QSP  +P E+L L SV +VH+
Sbjct:   63 VYLNTDAPFCLVAVGVQGAGKSHSVSTVIENCMLDVPR-ITHADKPCATLVFHYDTDQANYCQAATLTSPNESARIPPPVPVVERLIILVSPSFYYQRKRFYGNWPNCEVRPLLFRWREMTAGTIKSLMRVPIDK----DPPLYMGSVLGLLRRLQKEDSFPTLASFKEQLET--LDFSTTQSAPLQQRLSLIESLLAESSENAALPERIDLADACAPGTVVICDLTDPMLSAPESRGIFEVVLERFRTLSLKCGK----------LVVLDEAHKFLTHSTSSDELGSTIVELVRQMRHHGMRVVVSSQSPMTIPDELLELASVCLVHK 374          
BLAST of jgi.p|Trimin1|134327 vs. uniprot
Match: A0A7S3HAL9_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HAL9_9STRA)

HSP 1 Score: 219 bits (557), Expect = 4.040e-62
Identity = 133/333 (39.94%), Postives = 195/333 (58.56%), Query Frame = 1
Query:    1 LYLNTQEPFCLVAVDVQGAGKSHTVGLVVENCLLQFESMITSALTTT------LVMHYDEDPDLACELATVTEPNGDLPLNADIAIREVTVLVSPNYYQQMRNKYEGVPRTTVRPLLLDWDALSADQLKVIMQLSSDQISSNSEPLYFGALLDKLAEYQRDQSMPPYQDFRE----LCSGGGLDFTNAQSLPLEMRLRLLDTLVHQSAKNEEYRDHKTFL-EVMQVSGVVIAHLSDPLISSKKANCVFQVLLQQFCGKEWHRTPVHRKLVIFDEAHKYISDRDSDG---LAHEMLKVFRNMRHQGMRIIVSTQSPAILPHEMLALVSVMVVHR 957
            +YL+T +PFC V + VQGAGKSHT+ +++ENC+L   S    ++ +       LV+HYD+     CE   +  P   L L  D+ ++ + VL SP YY Q +  Y       V PLL DWD L+A QLK +M+LS          LY   +L+KL EYQR   +P +  F +    LC+  G      Q+ PL+ RL LL T+V +SA NE+ R+H   L  +MQ   +V+A L+DP++S+ +A  VFQVLL+QF G   H      K+V FDEAHKY++ +   G   L++ ++   R MRH+G+R+++STQSP  +P E+L L SV ++H+
Sbjct:  203 VYLDTTDPFCAVCIGVQGAGKSHTMNVILENCMLNTVSAENISVVSIPQPMCGLVLHYDQSESNCCEAVGLKSPAASLSLYPDLKVQRLVVLASPTYYLQRKAFYGN--SCEVIPLLFDWDTLTATQLKKLMRLSDSDAQ-----LYVSVILNKLREYQRKNKIPSFDGFLDEVMALCNVQG------QNAPLQQRLELLKTVVRESAPNEDLREHSHSLASLMQAGTLVVADLTDPMMSADEACGVFQVLLEQFRG---HPLGDVGKVVTFDEAHKYLN-KSGPGCVELSNAIVDTVRLMRHEGIRVLISTQSPLTMPPELLELTSVTILHK 518          
BLAST of jgi.p|Trimin1|134327 vs. uniprot
Match: A0A0H5R565_9EUKA (Uncharacterized protein n=1 Tax=Spongospora subterranea TaxID=70186 RepID=A0A0H5R565_9EUKA)

HSP 1 Score: 213 bits (541), Expect = 1.240e-61
Identity = 123/329 (37.39%), Postives = 196/329 (59.57%), Query Frame = 1
Query:    1 LYLNTQEPFCLVAVDVQGAGKSHTVGLVVENCLLQFESMITSALT-TTLVMHYDEDPDLACELATVT---EPNGDLPLNADIAIREVTVLVSPNYYQQMRNKYEGVPRTTVRPLLLDWDALSADQLKVIMQLSSDQISSNSEPLYFGALLDKLAEYQRDQSMPPYQDFRELCSGGGLDFTNAQSLPLEMRLRLLDTLVHQSAKNEEYRDHKTFLEVMQVSGVVIAHLSDPLISSKKANCVFQVLLQQF------CGKEWHRTPVHRKLVIFDEAHKYISDRDSDGLAHEMLKVFRNMRHQGMRIIVSTQSPAILPHEMLALVSVMVVHR 957
            ++LNT  PF  +AV VQG+GKSH++ +++E+CL+ +  +I +      LV HYD D    CE+A +T   +   DLP+     ++E+ +LVSP ++ Q    Y   P  TVRPLL  W  L+A  L  +MQ+  D+    S PLY GALLD L + Q+    P +Q F+   S   L+FT AQ  PL +RL+L+++L+ +S +N +         +++   VVI  ++DP++++ +A  +F+V+L++F      CGK          L +FDEAHKY+    +D L+  ++++ R MRH GMRI+VS+QSPA +P E++ L S+ +VH+
Sbjct:  110 IFLNTSVPFTAIAVGVQGSGKSHSLSVIMESCLINYPPVIRAHKPCAALVFHYDTDQANYCEVAFLTFRSKMMPDLPV-----VKELVILVSPAFFTQRSKFYRDWPNCTVRPLLFRWRDLTAGILLALMQVDMDK----SPPLYLGALLDLLRKLQKKNEYPTFQSFKNQLSS--LEFTPAQLAPLTLRLQLIESLLSESTENVDLYKSVDLEHIIKSGTVVICDMTDPMMTAGEARGIFEVVLEKFRTLPTTCGK----------LAVFDEAHKYMKSEGNDRLSETIIELSRQMRHHGMRIVVSSQSPATIPAELIELSSICIVHK 417          
BLAST of jgi.p|Trimin1|134327 vs. uniprot
Match: A0A0D2VFC2_CAPO3 (Uncharacterized protein n=1 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2VFC2_CAPO3)

HSP 1 Score: 206 bits (525), Expect = 2.520e-57
Identity = 133/330 (40.30%), Postives = 190/330 (57.58%), Query Frame = 1
Query:    1 LYLNTQEPFCLVAVDVQGAGKSHTVGLVVENCLLQF------ESMITSALTTTLVMHYDEDPDLACELATVTEPNGDLPLNADIAIREVTVLVSPNYYQQMRNKYEGVPRTTVRPLLLDWDALSADQLKVIMQLSSDQISSNSEPLYFGALLDKLAEYQRDQSMPPYQDF----RELCSGGGLDFTNAQSLPLEMRLRLLDTLVHQSAKNEEYR-DHKTFLEVMQVSGVVIAHLSDPLISSKKANCVFQVLLQQFCGKEWHRTPVHRKLVIFDEAHKYISDRDSDGLAHEMLKVFRNMRHQGMRIIVSTQSPAILPHEMLALVSVMVVHR 957
            ++LNT EPFCLVAV VQGAGKSHT+ +V+ENCL+        E +  +     LV+HYD++    CE   +  P+  L ++A +   ++ VLVSP+YY Q R  Y      TV+PLL  W  LSAD +K +M+     I      LY  ++LD L  YQRD   P +Q F    RE C   G      Q   LE R   L+ +V +S+ N++ R      L+ +    +V+A L+DPL+S  +AN +FQVL +QF  +  H +    K++  DEAHK+++   +DGL++ ++   R MRH GMR+IVSTQSP  L  E+L LVSV ++HR
Sbjct:  369 IFLNTHEPFCLVAVGVQGAGKSHTMSVVLENCLVPNPHPAGREIVRLNRPMAGLVLHYDQNTASVCEATGLISPDPSLQISA-LPRDKLVVLVSPSYYHQRRKFYGAY--CTVKPLLFRWSTLSADHIKKLMR-----IKDTDSQLYVSSMLDLLRRYQRDNKTPDFQGFMEQVREKCQLPG------QGGALEQRASFLEAMVAESSLNQDLRASGADLLQCIAPGSLVVADLTDPLLSRDEANGIFQVLTEQF--RTAHVSG--GKILALDEAHKFMNGLSTDGLSNAIVDAARLMRHDGMRVIVSTQSPKALAPELLELVSVAMLHR 680          
BLAST of jgi.p|Trimin1|134327 vs. uniprot
Match: R1FM47_EMIHU (Uncharacterized protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1FM47_EMIHU)

HSP 1 Score: 204 bits (520), Expect = 2.970e-57
Identity = 132/337 (39.17%), Postives = 191/337 (56.68%), Query Frame = 1
Query:    1 LYLNTQEPFCLVAVDVQGAGKSHTVGLVVENCLLQFE--SMITSALTTTLVMHYDEDPDLACELATVTEPNGDLPLNADIAIREVT----------VLVSPNYYQQMRNKYEGVPRTTVRPLLLDWDALSADQLKVIMQLSSDQISSNSEPLYFGALLDKLAEYQRDQSMPPYQDFRE----LCSGGGLDFTNAQSLPLEMRLRLLDTLVHQSAKNEEYRDHKTFL-EVMQVSGVVIAHLSDPLISSKKANCVFQVLLQQFCGKEWHRTPVHRKLVIFDEAHKYISDR-DSDGLAHEMLKVFRNMRHQGMRIIVSTQSPAILPHEMLALVSVMVVHR 957
            +YLN  +PFCL++V VQGAGKSHT   V+E CLL F   S +   ++  LV HYD+     CE   + +P+  +    ++A   V+          VL SP++Y Q +  Y GV    V+PLL  W  L A QLK++M+L       +S  LY   +L+ L  YQR + +PPYQ F +    LCS       + Q+ PL  R++LL   + ++  NE  RD    L EVM    +V+  L+DP+++   AN VFQVLL+ F  K+ H      KLV+FDEAH+Y+    + D LA E+    R MRH+G+R+++STQSP  +P E+L LV+++V HR
Sbjct:  161 VYLNVTDPFCLISVGVQGAGKSHTTNCVLETCLLPFAPLSRVRQPMSV-LVCHYDQSEANCCEATGLGQPSHGVAGLLELAGSAVSAPCLGHDSLLVLCSPSFYLQRKEYYAGV--CVVKPLLFRWGRLKAQQLKMLMKLDE-----SSTQLYVALMLEMLRGYQRARKVPPYQQFMKELEALCS-------SQQAGPLRQRMQLLSAFIWEAECNESLRDVGADLSEVMAAGRMVVVDLTDPMMAPADANGVFQVLLESFRFKQVHGAG---KLVVFDEAHRYMGMAGEGDALAREITDCARLMRHEGLRLMISTQSPKAMPEELLELVTLLVAHR 479          
BLAST of jgi.p|Trimin1|134327 vs. uniprot
Match: L1IX66_GUITC (Uncharacterized protein (Fragment) n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1IX66_GUITC)

HSP 1 Score: 195 bits (496), Expect = 6.660e-56
Identity = 130/335 (38.81%), Postives = 191/335 (57.01%), Query Frame = 1
Query:    1 LYLNTQEPFCLVAVDVQGAGKSHTVGLVVENCLLQFESMITSALT---TTLVMHYDEDPDLACELATVTEPNGDLP--LNA--------DIAIREVTVLVSPNYYQQMRNKY-EGVPRTTVRPLLLDWDALSADQLKVIMQLSSDQISSNSEPLYFGALLDKLAEYQRDQS-MPPYQDFRELCSGGGLDFTNAQSLPLEMRLRLLDTLVHQSAKNEEY-RDHKTFLEVMQVSGVVIAHLSDPLISSKKANCVFQVLLQQFCGKEWHRTPVHRKLVIFDEAHKYISDRDSDGLAHEMLKVFRNMRHQGMRIIVSTQSPAILPHEMLALVSVMVVHR 957
            +YLNT EPFC+ AV VQG GKSHT+G V+E C+L F S     L    TTLV+HYD +P    E   +  PN  L   L A        ++ +++V VLVSP YY+Q +  Y +GV   TV+PLL  W+ L++D +K IM+L  +        LY   +   L   QR+ S M   +  ++L S   L     Q+ PL  R++LL ++V +S+ N    R      +  +   +VI  L+DP+++S +AN +FQ+L++QF     H T    KL++ DEAHKY+   +SDGL+  ++ + R MRH  MR+ VSTQ+P+ L  E+L L+S  V+HR
Sbjct:    1 VYLNTSEPFCMAAVGVQGGGKSHTIGCVLEACMLPFPSSKVVNLNKPMTTLVLHYDTNPQAKVEATGLMSPNTMLEQMLRANSKTGAPCELNLKDVVVLVSPCYYKQRQQYYGKGV---TVKPLLFKWNRLTSDHIKRIMRLKEED-----NQLYVSMMTQLLRSNQRNNSSMSLAELLKQLQSECKL---TTQAGPLAQRIQLLQSIVQESSVNTSLARTSSDLQDACKPGKLVIVDLTDPMLTSAEANSIFQILVEQFRTLGGHVTG---KLLVLDEAHKYMQGVESDGLSQSIVNIARLMRHDNMRLAVSTQNPSTLAPELLELISFAVLHR 321          
BLAST of jgi.p|Trimin1|134327 vs. uniprot
Match: A0A507EXR8_9FUNG (C2H2-type domain-containing protein n=1 Tax=Chytriomyces confervae TaxID=246404 RepID=A0A507EXR8_9FUNG)

HSP 1 Score: 198 bits (504), Expect = 1.410e-55
Identity = 134/342 (39.18%), Postives = 190/342 (55.56%), Query Frame = 1
Query:    4 YLNTQEPFCLVAVDVQGAGKSHTVGLVVENCLLQFESMI--TSALTT------TLVMHYDEDPDLACELATVTEPNG--------DLPLNADIAIREVTVLVSPNYYQQMRNKYEGVPRTTVRPLLLDWDALSADQLKVIMQLSSDQISSNSEPLYFGALLDKLAEYQRDQSMPPYQDFRELCSGGGLDFTNAQSLPLEMRLRLLDTLVHQSAKNEEYRDHKTFL-EVMQVSGVVIAHLSDPLISSKKANCVFQVLLQQF-------CGKEWHRTPVHRKLVIFDEAHKYISDRDSDGLAHEMLKVFRNMRHQGMRIIVSTQSPAILPHEMLALVSVMVVHR 957
            +LN  EPFCLVA+ VQGAGKSHT+ +V+E+CL   + +    S+L         LV+H+D++P   CE   +  P G          PL + +   ++TVLVSP YY Q R+ + G   TT RPLL  W  LSAD +K +M+     I+ N   LY   LLD L  +QR    P + +FRE      L     Q  PL  RL LL++ + +S KN   RDH   L  ++Q   +++  L+DP++S+ + N VFQ+L++QF       CGK          LV  DEAHK++  + SDGL   +L   R MRH G+R+++STQSP  L  E+L L+SV V+H+
Sbjct:  161 HLNVHEPFCLVALGVQGAGKSHTMSVVLESCLTPTKHIPGPDSSLVNINGPMCALVLHFDQNPHSLCESTGLISPAGYYVDHLGMKSPLPS-LKRDQMTVLVSPTYYLQ-RSAFYGSYCTT-RPLLFSWKTLSADHIKKLMR-----INDNENQLYMATLLDLLRNFQRSCQKPLFSEFRERVVK--LANVKGQEAPLIQRLNLLESFLLESEKNVTLRDHAVDLGTLIQAGRLIVVDLTDPMLSASEVNGVFQLLVEQFRVAPLQGCGK----------LVAVDEAHKFMDGQSSDGLGDAILDTIRLMRHDGVRVLLSTQSPRALRPEILELISVAVLHQ 482          
BLAST of jgi.p|Trimin1|134327 vs. uniprot
Match: A0A7S2LK38_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2LK38_9STRA)

HSP 1 Score: 195 bits (496), Expect = 7.830e-55
Identity = 132/337 (39.17%), Postives = 187/337 (55.49%), Query Frame = 1
Query:    1 LYLNTQEPFCLVAVDVQGAGKSHTVGLVVENCLLQFESMITSALT---TTLVMHYDEDPDLACELATVTEPN-------GDLPLNADIAIRE-VTVLVSPNYYQQMRNKYEGVPRTTVRPLLLDWDALSADQLKVIMQLSSDQISSNSEPLYFGALLDKLAEYQRDQSMPPYQDF----RELCSGGGLDFTNAQSLPLEMRLRLLDTLVHQSAKNEEYRDHKTFLEVMQVSG--VVIAHLSDPLISSKKANCVFQVLLQQFCGKEWHRTPVHR--KLVIFDEAHKYISDRDSDGLAHEMLKVFRNMRHQGMRIIVSTQSPAILPHEMLALVSVMVVH 954
            +YLNT  PFC V V VQGAGKSHT   V+E+CL+ F       L    T++V+HYD++    CE A +  PN         L  N     +E   +LVSP +Y+Q R K+ G    TVRPLL  W +L+AD +K IM+     I S    LY  + L+ L  YQR+  +P +  F    RE+C+  G      Q  PL+ R+ LL+++V +S  N    +    L      G  ++IA L+DPL+S  +AN +FQVL +QF      RT   +  K +  DEAHKY++   +DGL+  ++ V R MRH G+R++VSTQSP  L  E+L LV++ V+H
Sbjct:  118 VYLNTHSPFCFVTVGVQGAGKSHTSSCVLESCLVPFAPGNVVKLNNPQTSMVLHYDQNITSICEAAGLLMPNPSVQKKMSSLGYNMSAVPKEKAVILVSPAFYKQ-RKKFYGDGLCTVRPLLFRWRSLTADHIKRIMR-----IESGDNQLYVASFLELLRGYQREALVPDFSSFLDQVREVCNAKG------QMSPLQQRIALLESVVAESKTNAGLINESLDLITCTKDGYQLIIADLTDPLLSKDEANGLFQVLTEQF------RTLPTKGGKCLFLDEAHKYMTGEKADGLSEAIVNVARLMRHDGVRLVVSTQSPKALAPELLELVTIAVLH 436          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|134327 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YQW3_9STRA1.710e-229100.00Zot domain-containing protein (Fragment) n=1 Tax=T... [more]
A0A835ZH89_9STRA4.160e-13465.63DUF853 domain-containing protein n=1 Tax=Tribonema... [more]
A0A4P9WBJ6_9FUNG8.950e-6338.91Uncharacterized protein n=1 Tax=Blyttiomyces helic... [more]
A0A7S3HAL9_9STRA4.040e-6239.94Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A0H5R565_9EUKA1.240e-6137.39Uncharacterized protein n=1 Tax=Spongospora subter... [more]
A0A0D2VFC2_CAPO32.520e-5740.30Uncharacterized protein n=1 Tax=Capsaspora owczarz... [more]
R1FM47_EMIHU2.970e-5739.17Uncharacterized protein n=1 Tax=Emiliania huxleyi ... [more]
L1IX66_GUITC6.660e-5638.81Uncharacterized protein (Fragment) n=1 Tax=Guillar... [more]
A0A507EXR8_9FUNG1.410e-5539.18C2H2-type domain-containing protein n=1 Tax=Chytri... [more]
A0A7S2LK38_9STRA7.830e-5539.17Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_49contigContig_49:30589..31914 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|134327|gw1.49.9.1
Descriptionexonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay
COG categoryJ
Max annot lvl33154|Opisthokonta
EggNOG OGsCOG1096@1|root,2QVRG@2759|Eukaryota,39JNN@33154|Opisthokonta
Evalue4.13e-58
Seed ortholog192875.XP_004364951.1
Hectar predicted targeting categoryother localisation
TranscriptId134649
TrackFilteredModels1
ProteinId134327
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|134327gene_10426Tribonema minus UTEX_B_3156 geneContig_49 30589..31914 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|134327Trimin1|134327|gw1.49.9.1Tribonema minus UTEX_B_3156 polypeptideContig_49 30589..31914 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_10426_2exon_10426_2Tribonema minus UTEX_B_3156 exonContig_49 30589..30897 -
exon_10426_1exon_10426_1Tribonema minus UTEX_B_3156 exonContig_49 31267..31914 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_10426CDS_10426Tribonema minus UTEX_B_3156 CDSContig_49 31267..31914 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_10426 ID=mRNA_10426|Name=jgi.p|Trimin1|134327|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=957bp|location=Sequence derived from alignment at Contig_49:30589..31914- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CTTTACCTCAATACCCAGGAGCCCTTCTGTCTCGTCGCTGTCGACGTTCA
GGGTGCAGGAAAGAGCCATACGGTTGGGTTAGTGGTGGAGAACTGCTTGC
TGCAGTTTGAAAGCATGATAACTAGTGCCCTCACAACAACCTTAGTGATG
CACTACGATGAAGACCCTGACTTAGCGTGTGAGCTCGCAACAGTCACGGA
GCCAAATGGCGACCTTCCACTCAATGCGGACATCGCCATTCGCGAAGTGA
CAGTGCTGGTGTCGCCCAACTATTATCAGCAGATGCGCAACAAGTACGAG
GGCGTACCGCGTACGACAGTGCGGCCGCTGCTGCTTGACTGGGATGCGCT
GAGCGCTGACCAGCTCAAGGTCATCATGCAGCTGAGTTCCGACCAGATCT
CGTCCAACAGTGAGCCCCTATACTTTGGCGCACTGCTCGACAAGCTTGCG
GAGTACCAGAGGGATCAGAGCATGCCGCCCTACCAAGACTTCAGGGAGCT
TTGCAGCGGCGGGGGCCTCGACTTCACAAACGCGCAGTCGCTGCCGCTGG
AGATGCGGCTGAGGCTGCTCGACACCCTCGTGCACCAGTCCGCAAAGAAT
GAGGAGTACAGGGACCATAAGACCTTCCTGGAAGTGATGCAGGTGAGTGG
CGTCGTCATCGCACACCTGTCGGATCCGCTCATCAGCTCCAAGAAGGCCA
ATTGCGTATTCCAAGTGCTGCTGCAACAGTTCTGCGGCAAGGAGTGGCAT
CGCACGCCGGTGCATCGCAAGCTGGTCATATTTGACGAAGCTCACAAGTA
CATCAGTGATCGCGACAGCGATGGCCTTGCTCACGAGATGCTCAAGGTTT
TTCGCAACATGCGTCATCAGGGAATGCGCATCATCGTCAGCACACAGAGC
CCTGCGATACTGCCGCATGAGATGCTGGCGCTAGTGAGCGTGATGGTCGT
ACACAGG
back to top

protein sequence of jgi.p|Trimin1|134327

>Trimin1|134327|gw1.49.9.1 ID=Trimin1|134327|gw1.49.9.1|Name=jgi.p|Trimin1|134327|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=319bp
LYLNTQEPFCLVAVDVQGAGKSHTVGLVVENCLLQFESMITSALTTTLVM
HYDEDPDLACELATVTEPNGDLPLNADIAIREVTVLVSPNYYQQMRNKYE
GVPRTTVRPLLLDWDALSADQLKVIMQLSSDQISSNSEPLYFGALLDKLA
EYQRDQSMPPYQDFRELCSGGGLDFTNAQSLPLEMRLRLLDTLVHQSAKN
EEYRDHKTFLEVMQVSGVVIAHLSDPLISSKKANCVFQVLLQQFCGKEWH
RTPVHRKLVIFDEAHKYISDRDSDGLAHEMLKVFRNMRHQGMRIIVSTQS
PAILPHEMLALVSVMVVHR
back to top

mRNA from alignment at Contig_49:30589..31914-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10426 ID=mRNA_10426|Name=jgi.p|Trimin1|134327|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1326bp|location=Sequence derived from alignment at Contig_49:30589..31914- (Tribonema minus UTEX_B_3156 )
CTTTACCTCAATACCCAGGAGCCCTTCTGTCTCGTCGCTGTCGACGTTCA GGGTGCAGGAAAGAGCCATACGGTTGGGTTAGTGGTGGAGAACTGCTTGC TGCAGTTTGAAAGCATGATAACTAGTGCCCTCACAACAACCTTAGTGATG CACTACGATGAAGACCCTGACTTAGCGTGTGAGCTCGCAACAGTCACGGA GCCAAATGGCGACCTTCCACTCAATGCGGACATCGCCATTCGCGAAGTGA CAGTGCTGGTGTCGCCCAACTATTATCAGCAGATGCGCAACAAGTACGAG GGCGTACCGCGTACGACAGTGCGGCCGCTGCTGCTTGACTGGGATGCGCT GAGCGCTGACCAGCTCAAGGTCATCATGCAGCTGAGTTCCGACCAGATCT CGTCCAACAGTGAGCCCCTATACTTTGGCGCACTGCTCGACAAGCTTGCG GAGTACCAGAGGGATCAGAGCATGCCGCCCTACCAAGACTTCAGGGAGCT TTGCAGCGGCGGGGGCCTCGACTTCACAAACGCGCAGTCGCTGCCGCTGG AGATGCGGCTGAGGCTGCTCGACACCCTCGTGCACCAGTCCGCAAAGAAT GAGGAGTACAGGGACCATAAGACCTTCCTGGAAGTGATGCAGGTGAGTGT GGCCACATGTGACTGGTGTGCAATCGTGACGCAATGTGCACTCATGATCA TCTCCTCATAGACGCCTGAATTCTCCTCATAGACGACTGAATTCTCCTCA TAGACGCCTGAATTCTCATGTGCAGGAAAAGTGCATTATGCACGAGGATG TTGCGACGCTGTAAACATTGCGACATGAGGATGACTTTGTGCTGTGTGCG ATCTCAATGTAGTTTTCGGCATTATGCTATTCGATACTCCGCAATCTGCT TTCATTGGCTCACGTACCTGCATGATGCGCTCATGTGCTGCTTACTACTA TAGATATTTGATGTATCACCTGTTGTGTCGTTCTTCTTGCCGTCTGCAGG ATGCGTTTGACACACAGGGCGTCGTCATCGCACACCTGTCGGATCCGCTC ATCAGCTCCAAGAAGGCCAATTGCGTATTCCAAGTGCTGCTGCAACAGTT CTGCGGCAAGGAGTGGCATCGCACGCCGGTGCATCGCAAGCTGGTCATAT TTGACGAAGCTCACAAGTACATCAGTGATCGCGACAGCGATGGCCTTGCT CACGAGATGCTCAAGGTTTTTCGCAACATGCGTCATCAGGGAATGCGCAT CATCGTCAGCACACAGAGCCCTGCGATACTGCCGCATGAGATGCTGGCGC TAGTGAGCGTGATGGTCGTACACAGG
back to top

Coding sequence (CDS) from alignment at Contig_49:30589..31914-

>mRNA_10426 ID=mRNA_10426|Name=jgi.p|Trimin1|134327|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=957bp|location=Sequence derived from alignment at Contig_49:30589..31914- (Tribonema minus UTEX_B_3156 )
CTTTACCTCAATACCCAGGAGCCCTTCTGTCTCGTCGCTGTCGACGTTCA
GGGTGCAGGAAAGAGCCATACGGTTGGGTTAGTGGTGGAGAACTGCTTGC
TGCAGTTTGAAAGCATGATAACTAGTGCCCTCACAACAACCTTAGTGATG
CACTACGATGAAGACCCTGACTTAGCGTGTGAGCTCGCAACAGTCACGGA
GCCAAATGGCGACCTTCCACTCAATGCGGACATCGCCATTCGCGAAGTGA
CAGTGCTGGTGTCGCCCAACTATTATCAGCAGATGCGCAACAAGTACGAG
GGCGTACCGCGTACGACAGTGCGGCCGCTGCTGCTTGACTGGGATGCGCT
GAGCGCTGACCAGCTCAAGGTCATCATGCAGCTGAGTTCCGACCAGATCT
CGTCCAACAGTGAGCCCCTATACTTTGGCGCACTGCTCGACAAGCTTGCG
GAGTACCAGAGGGATCAGAGCATGCCGCCCTACCAAGACTTCAGGGAGCT
TTGCAGCGGCGGGGGCCTCGACTTCACAAACGCGCAGTCGCTGCCGCTGG
AGATGCGGCTGAGGCTGCTCGACACCCTCGTGCACCAGTCCGCAAAGAAT
GAGGAGTACAGGGACCATAAGACCTTCCTGGAAGTGATGCAGGTGAGTGG
CGTCGTCATCGCACACCTGTCGGATCCGCTCATCAGCTCCAAGAAGGCCA
ATTGCGTATTCCAAGTGCTGCTGCAACAGTTCTGCGGCAAGGAGTGGCAT
CGCACGCCGGTGCATCGCAAGCTGGTCATATTTGACGAAGCTCACAAGTA
CATCAGTGATCGCGACAGCGATGGCCTTGCTCACGAGATGCTCAAGGTTT
TTCGCAACATGCGTCATCAGGGAATGCGCATCATCGTCAGCACACAGAGC
CCTGCGATACTGCCGCATGAGATGCTGGCGCTAGTGAGCGTGATGGTCGT
ACACAGG
back to top