mRNA_10474 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	jgi.p\|Trimin1\|71688
Unique Name	mRNA_10474
Type	mRNA
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )

Homology

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BLAST of jgi.p|Trimin1|71688 vs. uniprot
Match: A0A835YQZ7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQZ7_9STRA)

HSP 1 Score: 464 bits (1194), Expect = 6.170e-163
Identity = 238/238 (100.00%), Postives = 238/238 (100.00%), Query Frame = 3

Query:   72 MHACSCIALLCATASVSQAFLAPLPNVSTATCLRMSLESSKGGSKDVIGRDVLLRGALSAGVAAALALTTAVSPADAIGPVKIALTNPTYAEVTCPPNTQVPGQKAGAGLRPVCIKVKADADNPAKKDLENPAIFGRVFDEDGTSVVANNPDGGTDAGQFAMIEGVVPPGKSKIEFQFVAAIGPKEELSKKTLTFPSIKAISYPGAGRYGAITECEMNPLADECDLGDDFSAYRRVSK 785
            MHACSCIALLCATASVSQAFLAPLPNVSTATCLRMSLESSKGGSKDVIGRDVLLRGALSAGVAAALALTTAVSPADAIGPVKIALTNPTYAEVTCPPNTQVPGQKAGAGLRPVCIKVKADADNPAKKDLENPAIFGRVFDEDGTSVVANNPDGGTDAGQFAMIEGVVPPGKSKIEFQFVAAIGPKEELSKKTLTFPSIKAISYPGAGRYGAITECEMNPLADECDLGDDFSAYRRVSK
Sbjct:    1 MHACSCIALLCATASVSQAFLAPLPNVSTATCLRMSLESSKGGSKDVIGRDVLLRGALSAGVAAALALTTAVSPADAIGPVKIALTNPTYAEVTCPPNTQVPGQKAGAGLRPVCIKVKADADNPAKKDLENPAIFGRVFDEDGTSVVANNPDGGTDAGQFAMIEGVVPPGKSKIEFQFVAAIGPKEELSKKTLTFPSIKAISYPGAGRYGAITECEMNPLADECDLGDDFSAYRRVSK 238

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BLAST of jgi.p|Trimin1|71688 vs. uniprot
Match: A0A6H5JED9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JED9_9PHAE)

HSP 1 Score: 205 bits (522), Expect = 4.680e-61
Identity = 109/194 (56.19%), Postives = 136/194 (70.10%), Query Frame = 3

Query:  183 ESSKGGSKDVIGRDVLLRGALSAGVAAALALTTAVSP-----ADAIGPVKIALTNPTYAEVTCPPNTQVPGQKAGAGLRPVCIKVKADADNPAKKDLENPAIFGRVFDEDGTSVVANNPDGGTDAGQFAMIEGVVPPGKSKIEFQFVAAIGPKEELSKKTLTFPSIKAISYPGAGRYGAITECEMNPLADECDL 749
            E+   G +    R+V+    +   VAAA+ +TT  S      A A GP+K+ LT P YA V CPP TQVPG+KAGAGL+PVC+KV   A+NP+ K++ + A+FG VFDED TSVVANNPDG +DAGQFA+I+  +P G S++ FQFVAAI P E+ S K L F S+KAISY G  +YGAITECEMNPLA ECD 
Sbjct:   50 EAMSMGGEPQSRRNVIAGKGVGKSVAAAVGVTTLASASVPDEAAAFGPIKMELTEPEYASVVCPPKTQVPGEKAGAGLKPVCVKVTVTANNPSPKEVVDAAVFGFVFDEDSTSVVANNPDGASDAGQFAIID-KIPKGSSRVSFQFVAAIEPDEDFSLKKLKFKSLKAISYAGGQQYGAITECEMNPLAAECDF 242

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BLAST of jgi.p|Trimin1|71688 vs. uniprot
Match: A0A7S1DBN0_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1DBN0_CYCTE)

HSP 1 Score: 152 bits (384), Expect = 2.070e-40
Identity = 96/227 (42.29%), Postives = 137/227 (60.35%), Query Frame = 3

Query:   96 LLCATA-SVSQAFLAPLPNVSTATCLRMSLESSKGGSKDVIGRDVLLRGALSAGVAAALALTTAVSPAD---AIGPVKIALTNPTYAEVTCPPNTQVPGQKAGAGLRPVCIKVKADADNPAKKDLENPAIFGRVFDED-GTSVVANNPDGGTDAGQFAMIEGVVPPGKSKIEFQFVAAIGPKEELSKKT-----LTFPSIKAISYPGAGRYGAITECEMNPLADECD 746
            LLCAT  S  QAF +PL +   +T  +  L++S              R  L+ GVAA +   T + P+D   A+GP+K+AL NP Y+   CPPN  +PG+KA  G+R +C+ V+AD +    KDL+   ++G V D D G SV+ANNPD  TDAGQFAM+E V    K K+ F FVAA+  ++++S+       LTF S++ IS+PG  +YGAI+ CEM+  + EC+
Sbjct:   11 LLCATTISRVQAF-SPLVSYRKSTGTKTQLQASSXXXXX--------RTFLTTGVAAVVGAATTLLPSDPAQAVGPIKVALVNPVYSAQPCPPNRPIPGEKAMKGMRGLCVTVQADLETETPKDLDKVGVYGFVTDSDTGESVLANNPDLSTDAGQFAMVESVTTSDK-KVTFDFVAAVPREKDISQYENGIGPLTFGSLRVISFPGGQQYGAISPCEMDEFSMECE 227

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BLAST of jgi.p|Trimin1|71688 vs. uniprot
Match: A0A6V2NP08_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6V2NP08_9STRA)

HSP 1 Score: 149 bits (376), Expect = 3.380e-39
Identity = 91/226 (40.27%), Postives = 129/226 (57.08%), Query Frame = 3

Query:  129 FLAPLPNVSTA-----TCLRMSLESSKGGSKDVIGRDVLLRGALSAGVAAALALTTAVS-----PADAIGPVKIALTNPTYAEVTCPPNTQVPGQKAGAGLRPVCIKVKADADNPAKKDLENPAIFGRVFDE-DGTSVVANNPDGGTDAGQFAMIEGVVPPGKSKIEFQFVAAIGPKEELSK-----KTLTFPSIKAISYPGAGRYGAITECEMNPLADECDLGDD 758
            FLA LP  + A     + +RMSL  ++  +     R      A +  +    A   A S     PA+A+GPVK+ LTNPTY    CPP+  +PG+KA  G++ +C+ VKAD      KDLE   ++G V D   G SV+ANNPD  TDAGQFAMIE V    + K+EF+ +AAI  ++++++       L F  ++ ISYPG  +YGAI+ CEMN  + EC+  +D
Sbjct:   10 FLAALPTAAIAYSPGASFVRMSLSGNECAASSTSSRRTFFSKAAAVTLGTVTASNVATSYGAGGPAEAVGPVKVTLTNPTYFAEPCPPSKPIPGEKAMKGMKGLCVTVKADLAESPPKDLEKVGVYGFVTDGVTGDSVLANNPDLSTDAGQFAMIESVTTNDR-KVEFELIAAIPREKDVTQFENGIGPLNFDGLRIISYPGGQQYGAISPCEMNEFSSECEAWED 234

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BLAST of jgi.p|Trimin1|71688 vs. uniprot
Match: A0A7S4D819_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D819_HETAK)

HSP 1 Score: 144 bits (363), Expect = 2.600e-37
Identity = 109/256 (42.58%), Postives = 139/256 (54.30%), Query Frame = 3

Query:   15 PSHGGRCISRQRCQHITCRMHACSCIALLCAT--ASVSQAFLAPLPNVSTATCLRMSLESSKGGSKDVIGRDVLLRGALSAGVAAALA--LTTAVSP-ADAIGPVKIALTNPTYAEVTCPPNTQVPGQ---KAGAGLRPVCIKVKADADNPAKKDLENPAIFGRVFDEDGTSVVANNPDGGTDAGQFAMIEGVVPPGKSKIEFQFVAAIGPKEELSKKTLTFPSIKAISYPGAGRYGAITECEMNPLADECDLGDD 758
            P   G+  +R      T R  A     +LC    A+VS  F+  LP   ++  L MS +   GG    + R  L   A  +G A  LA   TT  +P A AIGPVK+ LTN  Y  V C       G    K+ AGL   C++V AD  NP KK + + ++FG VFD  G+SVV NNPD  +DAGQFA+I  +VP GKS I+F+ VAA+ P E      L F SIKAISYPG  RY AI++C+ NP  D CD  +D
Sbjct:    8 PGPSGKGSTRNNHLLKTARTMASFVFIILCVLFFAAVSTGFV--LPASKSSCVLHMSAD---GG----LSRRELFSAAAKSGAAFGLASAFTTGAAPMASAIGPVKMPLTNIAYQAVDCKGKELSGGSFTSKSTAGLVSYCVEVTADVFNPEKKTIIDASVFGFVFDNTGSSVVLNNPDARSDAGQFAIIPKIVP-GKSNIKFEMVAAV-PSERGDVGELRFESIKAISYPGGDRYKAISDCDFNPSGDGCDEEED 252

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BLAST of jgi.p|Trimin1|71688 vs. uniprot
Match: A0A7S2KRJ0_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2KRJ0_9STRA)

HSP 1 Score: 143 bits (360), Expect = 3.850e-37
Identity = 87/214 (40.65%), Postives = 126/214 (58.88%), Query Frame = 3

Query:  156 TATCLRMSLESSKGGSKDVIGRDVLLRGALSAGVAAALALTTAVSPADAIGPVKIALTNPTYAEVTCPPNTQVPGQKAGAGLRPVCIKVKADADNPAKKDLENPAIFGRVFDE-DGTSVVANNPDGGTDAGQFAMIEGVVPPGKSKIEFQFVAAIGPKEELSKKT-----LTFPSIKAISYPGAGRYGAITECEMNPLADECDLGD-DFSAYRR 776
            T+TCL M+L+          G ++    AL+ G  +    T  + PA AIGPVK+ L    Y    CPP+  +PG+KA  G+R +C+ V+A     A KDLE   ++G V D     SV+ANNPD  TDAGQF+MIE V    K  +EF+FVAA+  ++++SK+      L+F S++ IS+PG  +YGAI  CEMN  +DEC++ + +   Y+R
Sbjct:   14 TSTCLHMNLDRRS------FGANIASAAALALGTTS----TLNIQPASAIGPVKVPLEVLDYKAEICPPSKPIPGEKAMKGMRGLCVTVQAKLTENAPKDLEKVGVYGFVTDAVTSDSVLANNPDKSTDAGQFSMIESVTTKDKL-VEFEFVAAVPMEKDVSKEENGIGPLSFESLRIISFPGGQQYGAINPCEMNEFSDECEVWEAENGEYKR 216

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BLAST of jgi.p|Trimin1|71688 vs. uniprot
Match: A0A1E7EZ87_9STRA (Uncharacterized protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7EZ87_9STRA)

HSP 1 Score: 143 bits (361), Expect = 8.150e-37
Identity = 73/157 (46.50%), Postives = 103/157 (65.61%), Query Frame = 3

Query:  297 DAIGPVKIALTNPTYAEVTCPPNTQVPGQKAGAGLRPVCIKVKADADNPAKKDLENPAIFGRVFDED-GTSVVANNPDGGTDAGQFAMIEGVVPPGKSKIEFQFVAAIGPKEELSK-----KTLTFPSIKAISYPGAGRYGAITECEMNPLADECDL 749
            +AIGPVKI L NPTY  + CP +  +PG+KA  G+R +C+ V  D ++  K  LE   ++G V D   G SV+ANNPDGGTD+GQFAMIE +    K KI+F+F+AA+  +++L         + F S++ +S+PG  +YGAI  CEMN  +DECD+
Sbjct:   92 NAIGPVKINLLNPTYTAIPCPKDRPIPGEKAMKGMRGLCVTVAVDLEDLPKDPLEKVGVYGYVTDTGTGESVLANNPDGGTDSGQFAMIESITTTDK-KIQFEFIAAVPSEQDLRGYEAGIAPINFKSLRVVSFPGGQQYGAINPCEMNEFSDECDV 247

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BLAST of jgi.p|Trimin1|71688 vs. uniprot
Match: K0THP2_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0THP2_THAOC)

HSP 1 Score: 143 bits (360), Expect = 1.080e-36
Identity = 76/168 (45.24%), Postives = 112/168 (66.67%), Query Frame = 3

Query:  294 ADAIGPVKIALTNPTYAEVTCPPNTQVPGQKAGAGLRPVCIKVKADADNPAKKDLENPAIFGRVFDEDGT-SVVANNPDGGTDAGQFAMIEGVVPPGKSKIEFQFVAAIGPKEELSKKT-----LTFPSIKAISYPGAGRYGAITECEMNPLADEC-DLGDDFSAYRR 776
            A+AIGP+KI + NP+Y    CP +  +PG+KA  G+R +C++VKA+    + KDLE   I+G V D + T SV+ANNPD GTDAGQFA+I  +    K KIEF+F+AA+  ++++SK       L+F S++ +S+PG  +YGAI+ CEMN  + EC D  ++   Y+R
Sbjct:   89 AEAIGPIKIDIINPSYVAAPCPKDKPIPGEKAMKGMRGLCVQVKAELAENSPKDLEKVGIYGYVDDAESTESVLANNPDSGTDAGQFAIIPEIKTTDK-KIEFEFIAAVPMEKDISKYEDGIGPLSFKSLRIVSFPGGQQYGAISPCEMNEFSSECEDWEEENGPYQR 255

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BLAST of jgi.p|Trimin1|71688 vs. uniprot
Match: A0A1Z5J9N6_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5J9N6_FISSO)

HSP 1 Score: 142 bits (358), Expect = 1.140e-36
Identity = 93/220 (42.27%), Postives = 135/220 (61.36%), Query Frame = 3

Query:  114 SVSQAFLAPLPNVS---TATCLRMSLESSKGGSKDVIGRDVLLRGALSAGVAAALALTTAVSPADAIGPVKIALTNPTYAEVTCPPNTQVPGQKAGAGLRPVCIKVKADADNPAKKDLENPAIFGRVFDED-GTSVVANNPDGGTDAGQFAMIEGVVPPGKSKIEFQFVAAIGPKEELSKKT-----LTFPSIKAISYPGAGRYGAITECEMNPLADECD 746
            ++SQAF   LP +S   T   LRM+ + S     +V  R+ LL+        AA AL T  S A AIGPV+++LT  +Y   TCPPN  +PGQKA  G+R +C+ V+A  ++P  K+LE   ++G + D D G SV+ANNPD  TDAGQFA++E V    K+ IEF+F+AA+  +++L++       L F S++ +S+PG  +YG I  CEMN  + EC+
Sbjct:   12 AISQAFQPVLPEISSSRTTAPLRMTADDS---FSNVNRRNFLLQ------TIAASALLTPQS-AHAIGPVRVSLTPTSYIARTCPPNKPIPGQKAMQGMRGLCVTVQATLNDPVPKELEKVGVYGFITDGDTGDSVLANNPDLSTDAGQFAIVEKVKTTDKT-IEFEFIAAVPREKDLTQYDNGIGPLHFESLRLVSFPGGQQYGEINPCEMNEFSIECE 220

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BLAST of jgi.p|Trimin1|71688 vs. uniprot
Match: B7FXB4_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7FXB4_PHATC)

HSP 1 Score: 138 bits (347), Expect = 4.890e-35
Identity = 83/194 (42.78%), Postives = 118/194 (60.82%), Query Frame = 3

Query:  219 RDVLLRGALSAGVAAALALTTAVSPADAIGPVKIALTNPTYAEVTCPPNTQVPGQKAGAGLRPVCIKVKADADNPAKKDLENPAIFGRVFDED-GTSVVANNPDGGTDAGQFAMIEGVVPPGKSKIEFQFVAAIGPKEELSKKT-----LTFPSIKAISYPGAGRYGAITECEMNPLADECDLGD-DFSAYRRV 779
            R  L+  A +A   +   L TA + A A+GPVKI L   +Y    CPP+  +PGQ A  G+R +C+ V+A   + A KDLE   ++G + D   G SV+ANNPD  TDAGQFAM+E V P  K KI F+FVAA+   ++LS+       L F S++ ISYPG  +YGAI  CEMN  ++EC++ + +  +Y++ 
Sbjct:   43 RSFLVTNAAAAAAVSGWGLWTAPA-AQAVGPVKITLEALSYQARPCPPDKPIPGQMAMKGMRGLCVTVEAKLKDAAPKDLEKVGVYGFITDASTGNSVLANNPDLSTDAGQFAMVESVTPKDK-KILFEFVAAVPSDKDLSQYEDGIGPLDFESLRIISYPGGQQYGAINPCEMNEFSEECEVWEQENGSYQKA 234

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|71688 vs. uniprot

BLAST of jgi.p|Trimin1|71688 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 21


Match Name	E-value	Identity	Description
A0A835YQZ7_9STRA	6.170e-163	100.00	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
A0A6H5JED9_9PHAE	4.680e-61	56.19	Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2...	[more]
A0A7S1DBN0_CYCTE	2.070e-40	42.29	Hypothetical protein n=1 Tax=Cyclophora tenuis Tax...	[more]
A0A6V2NP08_9STRA	3.380e-39	40.27	Hypothetical protein n=2 Tax=Ditylum brightwellii ...	[more]
A0A7S4D819_HETAK	2.600e-37	42.58	Hypothetical protein n=1 Tax=Heterosigma akashiwo ...	[more]
A0A7S2KRJ0_9STRA	3.850e-37	40.65	Hypothetical protein n=1 Tax=Leptocylindrus danicu...	[more]
A0A1E7EZ87_9STRA	8.150e-37	46.50	Uncharacterized protein n=1 Tax=Fragilariopsis cyl...	[more]
K0THP2_THAOC	1.080e-36	45.24	Uncharacterized protein n=1 Tax=Thalassiosira ocea...	[more]
A0A1Z5J9N6_FISSO	1.140e-36	42.27	Uncharacterized protein n=2 Tax=Fistulifera solari...	[more]
B7FXB4_PHATC	4.890e-35	42.78	Predicted protein n=1 Tax=Phaeodactylum tricornutu...	[more]

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_49	contig	Contig_49:548671..553069 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Properties


Property Name	Value
ProteomeId	Trimin1\|71688\|CE71687_231
Max annot lvl	2759\|Eukaryota
EggNOG OGs	2D3UH@1\|root,2S515@2759\|Eukaryota
Evalue	7.35e-62
Seed ortholog	2880.D8LQV9
Hectar predicted targeting category	chloroplast
Ec32 ortholog description	conserved unknown protein
Ec32 ortholog	Ec-07_001760.1
TranscriptId	72010
Track	FilteredModels1
ProteinId	71688

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|71688	gene_10474	Tribonema minus UTEX_B_3156	gene	Contig_49 548671..553069 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|71688	Trimin1\|71688\|CE71687_231	Tribonema minus UTEX_B_3156	polypeptide	Contig_49 548742..552753 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
exon_10474_1	exon_10474_1	Tribonema minus UTEX_B_3156	exon	Contig_49 548671..548907 +
exon_10474_2	exon_10474_2	Tribonema minus UTEX_B_3156	exon	Contig_49 549015..549148 +
exon_10474_3	exon_10474_3	Tribonema minus UTEX_B_3156	exon	Contig_49 549525..549605 +
exon_10474_4	exon_10474_4	Tribonema minus UTEX_B_3156	exon	Contig_49 550533..550574 +
exon_10474_5	exon_10474_5	Tribonema minus UTEX_B_3156	exon	Contig_49 551228..551323 +
exon_10474_6	exon_10474_6	Tribonema minus UTEX_B_3156	exon	Contig_49 552016..552109 +
exon_10474_7	exon_10474_7	Tribonema minus UTEX_B_3156	exon	Contig_49 552650..553069 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
UTR5_10474	UTR5_10474	Tribonema minus UTEX_B_3156	five_prime_UTR	Contig_49 548671..548741 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
CDS_10474	CDS_10474	Tribonema minus UTEX_B_3156	CDS	Contig_49 548742..548907 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
UTR3_10474	UTR3_10474	Tribonema minus UTEX_B_3156	three_prime_UTR	Contig_49 552754..553069 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Contig_49:548671..553069+
coding sequence from alignment at Contig_49:548671..553069+

spliced messenger RNA

>mRNA_10474 ID=mRNA_10474|Name=jgi.p|Trimin1|71688|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1104bp|location=Sequence derived from alignment at Contig_49:548671..553069+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GCGTAAGCTTTTGACCATCTCACGGAGGGAGGTGCATCAGCCGGCAGCGT
TGTCAACACATCACCTGCAGAATGCACGCGTGCAGCTGCATTGCGCTCTT
GTGCGCCACCGCCAGCGTGAGCCAAGCTTTTCTTGCTCCCTTGCCTAACG
TCAGCACAGCAACATGCTTGCGCATGTCTTTGGAATCCAGTAAGGGCGGC
AGCAAGGATGTAATTGGACGGGATGTGCTGCTACGAGGTGCGCTATCTGC
AGGCGTTGCTGCTGCGCTGGCCCTCACCACGGCTGTATCGCCTGCTGATG
CTATCGGGCCTGTCAAGATTGCGCTCACAAACCCGACCTACGCCGAGGTC
ACGTGCCCGCCGAACACACAGGTACCTGGCCAAAAGGCGGGCGCTGGCTT
GCGGCCGGTGTGCATCAAAGTGAAGGCGGATGCTGACAACCCGGCCAAGA
AGGACCTGGAGAACCCTGCTATATTTGGGCGCGTGTTTGATGAGGATGGC
ACCAGCGTGGTCGCCAACAACCCTGACGGGGGCACAGATGCGGGGCAGTT
TGCCATGATTGAGGGAGTCGTACCCCCAGGCAAAAGCAAGATCGAGTTCC
AGTTTGTGGCCGCCATTGGGCCCAAGGAGGAGCTGAGCAAGAAGACACTC
ACGTTTCCCTCAATAAAGGCCATCTCATATCCTGGTGCGGGGCGCTACGG
TGCCATCACGGAGTGCGAGATGAACCCGCTCGCAGACGAATGTGACCTTG
GTGATGACTTCAGCGCATACCGCAGGGTCTCCAAGTAGGGTTTCTAGGGC
TAGCAAGGGACTCCTGGCCCCTTCGAGTCGGGCCTGCCCTAGATGCGGGC
TGCAAGGGCTTGACTGCGGCTCCGCACGTGCAACTGGCGACAGTCAAACT
CGCCTTTATAAGGCGATCCTCCATACTCTTTGGCGGCGACGCGCTTGTGC
GTGGGAGATACGTCATGGACGGCTGCAGATACGGGAGTAAACAGCACACA
CACACAAGACAAAGGAAAGATGCATGCGGTAAAGATGGTTTCGGCACTTA
CTGCTGCGCACACACAAAACATGAGAATGCCACTTAGAGGTTTGCTATAC
GTCC

protein sequence of jgi.p|Trimin1|71688

>Trimin1|71688|CE71687_231 ID=Trimin1|71688|CE71687_231|Name=jgi.p|Trimin1|71688|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=239bp
MHACSCIALLCATASVSQAFLAPLPNVSTATCLRMSLESSKGGSKDVIGR
DVLLRGALSAGVAAALALTTAVSPADAIGPVKIALTNPTYAEVTCPPNTQ
VPGQKAGAGLRPVCIKVKADADNPAKKDLENPAIFGRVFDEDGTSVVANN
PDGGTDAGQFAMIEGVVPPGKSKIEFQFVAAIGPKEELSKKTLTFPSIKA
ISYPGAGRYGAITECEMNPLADECDLGDDFSAYRRVSK*

mRNA from alignment at Contig_49:548671..553069+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_10474 ID=mRNA_10474|Name=jgi.p|Trimin1|71688|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=4399bp|location=Sequence derived from alignment at Contig_49:548671..553069+ (Tribonema minus UTEX_B_3156 )
GCGTAAGCTTTTGACCATCTCACGGAGGGAGGTGCATCAGCCGGCAGCGT
TGTCAACACATCACCTGCAGAATGCACGCGTGCAGCTGCATTGCGCTCTT
GTGCGCCACCGCCAGCGTGAGCCAAGCTTTTCTTGCTCCCTTGCCTAACG
TCAGCACAGCAACATGCTTGCGCATGTCTTTGGAATCCAGTAAGGGCGGC
AGCAAGGATGTAATTGGACGGGATGTGCTGCTACGAGGTGAGTGCTGTCG
GCACATCACACATATCCGGCACACTGCAGATTTTCATGACTTTGAAGTTG
CATGTAGTGTTGAAGCGCGGTTTGTGTGCCACCTTTTCCTGCAGGTGCGC
TATCTGCAGGCGTTGCTGCTGCGCTGGCCCTCACCACGGCTGTATCGCCT
GCTGATGCTATCGGGCCTGTCAAGATTGCGCTCACAAACCCGACCTACGC
CGAGGTCACGTGCCCGCCGAACACACAGGTGATGTGATACATCTGGCACG
GACGCAAACCCGCAGTTGTGCAGGACACTGCTGGTATGTGAGCATTGTCT
TTAATGTTGTAGGAGCACAGAAGTTGTGCAAACAGCGCGCGACTTGTCTA
TAAAATGTGCTGTTCAGAATCACCAAACAGCTGCTGAGGTCATGTAAGGT
ACAGCTTTCAAACACAAGTACACAAAGCATCATTATCTCAGGCAATCACG
TCAACCTGTGCGACTTGCCTCTGTCTTTGTCGCTGTTTGCAGACTGACGT
TATGCGCAGGCCTCTCGAAAAGAAAACTGAAATCAGATCTTCAGCACCTC
GTGAGCTGTGTCTGATATCATCACTACACACACTCACACACACACACACT
ACAGGTACCTGGCCAAAAGGCGGGCGCTGGCTTGCGGCCGGTGTGCATCA
AAGTGAAGGCGGATGCTGACAACCCGGCCAAGAAGGTGAGCGCTGCCACA
CACACGTGTCTGCAGTAGCAGTGCTCAGCACTGACAAAGCTCATTAATGG
TGCAATGCCATGCAATACCGGAAGTGGCGCTGCATCCTGTACGCATTGTG
GGGAACTTTCAAAAGTGGACACTGCGCGCAACTGCAGCATCGCGCTGCAA
GGGCGCATGTTGAAGCACTTGGCCTGCTGAATAGGGTGTCGGTACCACAT
GATAGAGGCTGCACGCCTGCCATTGTCTGGAGATGCGAAGGCAACAGCAA
CGCGCTTTCTGTCCCATCATCATAGCATTTGATGGTGTGCGCCAGTTTGT
TGTAGGAGTCAAGGTTATCTCCAGAAGTGGAGGAGTGTATGCGCTGTTGG
TGCTCGTGCTTTTGGCTGCTTAACTAGATACACCATTGCCAACATTTGTG
CTGCCACTTTTTGTGTGTGTGTTGATGTCAATTTGAGATGGAATGGCTGC
CTTGCGCTTGATGCAGCTGTTTGGAGCTGCATTCTGCAGCTGCTTGATGC
TGCATGGCTCTGCCGTTTGTGAGGGGGTTGCAGAGTGCTGCAATGACAAA
TACTTGTGCTAAATGGCGATACTGTGACCTGTGGCGGTCATTATCGTGTC
GCTCATGTCTTTGCTGAAAATCTTGGTGATCATCATATGCTACTCGCACA
TATTATCGGCCATAATCCATGGGGTGCCGCAGCTCCACGAGCAGCCTTGC
TGTAGACCATCGTTGTACGGCTGCGGTAGACTTATGGTCACGATGGGAGA
CGTCGAAATACCTCCCCTGCCTTAACCTACTTTGAAGTATCATAGACTAG
TGCAGTCTGGCAACACAACTTTCTGTCCAGAGCGGATAGATTGGGATGTT
CAATGTATTTATTGCTCACAGCCTCTGCACATGTGTTACTGCCTACTGCT
GGTGCAAACCAGGACCTGGAGAACCCTGCTATATTTGGGCGCGTGTTTGA
TGAGGTGAGCGCTGCTGCAACAGTTACACTGCCATACACCATTCAGTTAT
GTAGGTATGCAGCTAGCGTTCACAATGCTCACATGTTGTCATTACATGAT
GTGGGTCATGCAGAGGGTATACCGCACGCTTCAGGCTCCTCCAGACAAGG
CTCAATTAACGAGGCTCAAGTAGAAGGTGGCAGTAGCAATGACACCCTCA
ACAGATGCCATGCACGTAGGCTGCCAGAATGCCCTGATCATAGCGCTGTA
TTTGTCTGGTTGTTGATGCACAAGGATATATTGCGTCTCTGGTCACTGGA
ACGTGGGTTTGCACAGTTTCAGTGCTGGGAGCCAGAGCATTCCTGCAACT
ATTTGAGGCAGTTGTTACAGTACGCGTTTGTTTCAACCTTTCTGCAGTAG
GTGCTGAGAGTGCCGCCAAGCTTGGCGCAGCGCTGTTCATCATGCCACAA
ATTCCCTCGCCTTTTGTACCCGCTGACCACTTTGTGTGAGCAGGAGGCAC
ATAACCATTCAATCATCACACCCACAATGTTAATTGTCAAGAATCGCATT
TAGATGACTAGACTGATTCACTGCACCAGAGCGGCTGCAAACAATCGCAC
GATCGTGCATGCAACGAGAGTACAACAATACTCAACCCACTGAGCACTGT
CTTGCAGGATGGCACCAGCGTGGTCGCCAACAACCCTGACGGGGGCACAG
ATGCGGGGCAGTTTGCCATGATTGAGGGAGTCGTACCCCCAGGCAAAAGC
AAGGTGAGTCAGGATTGAGAGGGTAATGCATATCTGCAACATCACACCAA
GCCGTGGTTTAGGCTGCCGCATGCTGTTTCCTGCTTGTACATTGCAAGTG
GCAATTGCTGCGGTTCATCAGCTGCATGACAGCCAGCCGTGGACGCTGTA
GTATTGACATACTGGCAGTTCTGTTGGGCGTCAGGTCACAAGTCTGTGTG
GTTAGGAAGTCTGGGTTGCTACACTTGCAGTCCCAGTACATTGATGCCCA
ACCATGATCTGGGGAGAGACTGGACATTGGGGGCGTAGGACTCTTGGGCG
AGGCCGGTGCGCTATTGTCGCCACTCTGGCTATCGCAGGTCTCTTTAGCA
TGCTAGTGAGCCGTTTGCCAGTTGCAGTGACTGACGCTATGGCAATACAG
GGTCACCTGAAGCGTTTCGTAATGAGCGATGAGAGCATGTCGCCTGTTCA
GGCTTTAACAATCCGCTGCAGCGACAGTGCCATAGGCTTGACAGGCGTCA
CAGGAGGTGTGCTGAACCATTTTGTGTGCTGAATCATGACGTGTGCCTTT
GTGTTGCCAGGCTTGCATTAGCTGGACCTATCAATAACGCATGCGCAATT
GCAGCTTGTTCAAAAAACACGTGGCGTAATTGTAACCACATCTGCCTGAG
CAGCAACTCTGAAGCTCGCACCCATTCTGGCGTTTGCTCGTGCAGATCGA
GTTCCAGTTTGTGGCCGCCATTGGGCCCAAGGAGGAGCTGAGCAAGAAGA
CACTCACGTTTCCCTCAATAAAGGCCATCTCATATCCTGGTGAGCAAGCT
GCACCTCAATGTTTCTGGTCACCTCTTGTCACTGACATCCTGGGACCTCT
TGCAATGGCGGAAGTACGAAACAACCTGGTGCAATTATCTCAGCCAAGTT
ATTGTATTGCCATTCACTGTGGTCTTGGCACGGTGCCATTGTGATGACTT
CCAATATTCATGGCGAGGCACCCTGTGCACATTGTCACCAAGGTACCATG
TGATCGCTTTTGACGTTCAGAAGTCGCGTGTACGCCCCTTTGTGCAAAAG
TTGCATGAGTACGTGAATGGCGTCATTCGCACCCTCAAGACCTTCAGCTT
CAAGAGATGTAGAGCAGTGTGCCGGAGACATTGTGGCCCATAAAGCATAG
GTTTTCATGCTGCCATCAGCAGTGGCGACATCGGTGAAATGGAAACATCC
AGCGTTACGTGCCGCACGCAGCAGGGACAGGCGAACAGCCTCCCCACAAA
ACCCAGCCATGCACCACTACCTCTTTTGAAGCAACCCTAACCCTAACACT
GCTTCAATTCTTATTTGGACCTGCGCCAGGTGCGGGGCGCTACGGTGCCA
TCACGGAGTGCGAGATGAACCCGCTCGCAGACGAATGTGACCTTGGTGAT
GACTTCAGCGCATACCGCAGGGTCTCCAAGTAGGGTTTCTAGGGCTAGCA
AGGGACTCCTGGCCCCTTCGAGTCGGGCCTGCCCTAGATGCGGGCTGCAA
GGGCTTGACTGCGGCTCCGCACGTGCAACTGGCGACAGTCAAACTCGCCT
TTATAAGGCGATCCTCCATACTCTTTGGCGGCGACGCGCTTGTGCGTGGG
AGATACGTCATGGACGGCTGCAGATACGGGAGTAAACAGCACACACACAC
AAGACAAAGGAAAGATGCATGCGGTAAAGATGGTTTCGGCACTTACTGCT
GCGCACACACAAAACATGAGAATGCCACTTAGAGGTTTGCTATACGTCC

Coding sequence (CDS) from alignment at Contig_49:548671..553069+

>mRNA_10474 ID=mRNA_10474|Name=jgi.p|Trimin1|71688|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=717bp|location=Sequence derived from alignment at Contig_49:548671..553069+ (Tribonema minus UTEX_B_3156 )
ATGCACGCGTGCAGCTGCATTGCGCTCTTGTGCGCCACCGCCAGCGTGAG
CCAAGCTTTTCTTGCTCCCTTGCCTAACGTCAGCACAGCAACATGCTTGC
GCATGTCTTTGGAATCCAGTAAGGGCGGCAGCAAGGATGTAATTGGACGG
GATGTGCTGCTACGAGGTGCGCTATCTGCAGGCGTTGCTGCTGCGCTGGC
CCTCACCACGGCTGTATCGCCTGCTGATGCTATCGGGCCTGTCAAGATTG
CGCTCACAAACCCGACCTACGCCGAGGTCACGTGCCCGCCGAACACACAG
GTACCTGGCCAAAAGGCGGGCGCTGGCTTGCGGCCGGTGTGCATCAAAGT
GAAGGCGGATGCTGACAACCCGGCCAAGAAGGACCTGGAGAACCCTGCTA
TATTTGGGCGCGTGTTTGATGAGGATGGCACCAGCGTGGTCGCCAACAAC
CCTGACGGGGGCACAGATGCGGGGCAGTTTGCCATGATTGAGGGAGTCGT
ACCCCCAGGCAAAAGCAAGATCGAGTTCCAGTTTGTGGCCGCCATTGGGC
CCAAGGAGGAGCTGAGCAAGAAGACACTCACGTTTCCCTCAATAAAGGCC
ATCTCATATCCTGGTGCGGGGCGCTACGGTGCCATCACGGAGTGCGAGAT
GAACCCGCTCGCAGACGAATGTGACCTTGGTGATGACTTCAGCGCATACC
GCAGGGTCTCCAAGTAG