mRNA_4646 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|349633
Unique NamemRNA_4646
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|349633 vs. uniprot
Match: A0A835YVL1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVL1_9STRA)

HSP 1 Score: 214 bits (546), Expect = 1.520e-68
Identity = 161/162 (99.38%), Postives = 161/162 (99.38%), Query Frame = 2 
Query:    5 MDDLRSPDKVDRDKMSPGIVYGAASAGAVLGLILSGPLLAVGLGIAGAGAAITQGPGTVGGDIARSAGRLAQNSFDKAKELERKHDVIARVKGASRDGLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAKAILAGLDKANELLEGKDKKER 490
            MDDLRSPDKVDRDKMSPGIVYGAASAGAVLGLILSGPLLAVGLGIAGAGAAITQGPGTVGGDIARSAGRLAQNSFDKAKELERKHDVIARVKGASRDGLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX AAKAILAGLDKANELLEGKDKKER
Sbjct:    1 MDDLRSPDKVDRDKMSPGIVYGAASAGAVLGLILSGPLLAVGLGIAGAGAAITQGPGTVGGDIARSAGRLAQNSFDKAKELERKHDVIARVKGASRDGLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRAAKAILAGLDKANELLEGKDKKER 162
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BLAST of jgi.p|Trimin1|349633 vs. uniprot
Match: A0A836CEH6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEH6_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 4.010e-17
Identity = 47/76 (61.84%), Postives = 54/76 (71.05%), Query Frame = 2 
Query:   59 IVYGAASAGAVLGLILSGPLLAVGLGIAGAGAAITQGPGTVGGDIARSAGRLAQNSFDKAKELERKHDVIARVKGA 286
            +V GA  AGAV G +L GPLLAVGLG+AGAG A TQ  GT  GD AR AG+LA N F  A+++ERKH VI R K A
Sbjct:   30 VVLGAGGAGAVAGYMLGGPLLAVGLGVAGAGVAATQPQGTRSGDFARGAGQLAVNGFHAARDVERKHQVIDRFKAA 105
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BLAST of jgi.p|Trimin1|349633 vs. uniprot
Match: D8LTN9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTN9_ECTSI)

HSP 1 Score: 57.0 bits (136), Expect = 5.920e-7
Identity = 34/83 (40.96%), Postives = 48/83 (57.83%), Query Frame = 2 
Query:   41 DKMSPGIVYGAASAGAVLGLILSGPLLAVGLGIAGAGAAITQGPGTVGGDIARSAGRLAQNSFDKAKELERKHDVIARVKGAS 289
            D    G+V GAA  GA  GL+LSGPL+A+GLG   A   + +      GD+ARS G+      +K KE+  ++ V  +VKGA+
Sbjct:   14 DAPPAGVVGGAALVGATTGLLLSGPLVAIGLGAGAAACCLRR---DQAGDVARSTGQAGLAVVEKGKEINTQYGVADKVKGAA 93
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|349633 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A835YVL1_9STRA1.520e-6899.38Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CEH6_9STRA4.010e-1761.84Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D8LTN9_ECTSI5.920e-740.96Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_46contigContig_46:598870..600017 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|349633|estExt_Genemark1.C_Ctg_460093
Max annot lvl2759|Eukaryota
EggNOG OGs2E68G@1|root,2SCZE@2759|Eukaryota
Evalue6.46e-08
Seed ortholog2880.D8LTN9
Hectar predicted targeting categorysignal anchor
TranscriptId349955
TrackFilteredModels1
ProteinId349633
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|349633gene_4646Tribonema minus UTEX_B_3156 geneContig_46 598870..600017 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|349633Trimin1|349633|estExt_Genemark1.C_Ctg_460093Tribonema minus UTEX_B_3156 polypeptideContig_46 598924..600013 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_4646_3exon_4646_3Tribonema minus UTEX_B_3156 exonContig_46 598870..599191 -
exon_4646_2exon_4646_2Tribonema minus UTEX_B_3156 exonContig_46 599702..599843 -
exon_4646_1exon_4646_1Tribonema minus UTEX_B_3156 exonContig_46 599935..600017 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_4646UTR3_4646Tribonema minus UTEX_B_3156 three_prime_UTRContig_46 598870..598923 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_4646CDS_4646Tribonema minus UTEX_B_3156 CDSContig_46 599935..600013 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_4646UTR5_4646Tribonema minus UTEX_B_3156 five_prime_UTRContig_46 600014..600017 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_4646 ID=mRNA_4646|Name=jgi.p|Trimin1|349633|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=547bp|location=Sequence derived from alignment at Contig_46:598870..600017- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
AAACATGGACGATCTGAGGTCGCCAGATAAGGTGGACCGGGACAAGATGA
GCCCAGGGATTGTTTACGGCGCTGCTTCTGCAGGCGCCGTGCTGGGACTT
ATCCTGAGCGGCCCTCTACTTGCCGTCGGGCTCGGCATAGCCGGTGCAGG
CGCCGCCATCACTCAGGGGCCGGGAACTGTGGGTGGAGACATCGCACGAT
CGGCAGGCCGGTTGGCTCAAAACAGCTTCGACAAGGCCAAGGAGCTGGAG
CGCAAACACGACGTCATCGCGCGCGTCAAGGGCGCCTCGCGCGACGGCCT
CGACCGCGTGCGCGCCCTCAACGACGAGCACAGAATAGTCGACAAGACCA
AGGCTGGCGCCGCCGACCTCGCGCGCCGCGCGCGCGAGCTAGATGAGCAG
CACGGCGTGCGCGATCGCGCAGCTAAGGCCATTCTAGCGGGGCTCGACAA
GGCGAACGAGCTGCTGGAGGGCAAGGACAAGAAGGAGCGCTGAGCGCTGA
GGACTGCGCAAGGGGGATGTAGGGGATATGTATGGTGCAGGATGGGG
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protein sequence of jgi.p|Trimin1|349633

>Trimin1|349633|estExt_Genemark1.C_Ctg_460093 ID=Trimin1|349633|estExt_Genemark1.C_Ctg_460093|Name=jgi.p|Trimin1|349633|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=163bp
MDDLRSPDKVDRDKMSPGIVYGAASAGAVLGLILSGPLLAVGLGIAGAGA
AITQGPGTVGGDIARSAGRLAQNSFDKAKELERKHDVIARVKGASRDGLD
RVRALNDEHRIVDKTKAGAADLARRARELDEQHGVRDRAAKAILAGLDKA
NELLEGKDKKER*
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mRNA from alignment at Contig_46:598870..600017-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4646 ID=mRNA_4646|Name=jgi.p|Trimin1|349633|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1148bp|location=Sequence derived from alignment at Contig_46:598870..600017- (Tribonema minus UTEX_B_3156 )
AAACATGGACGATCTGAGGTCGCCAGATAAGGTGGACCGGGACAAGATGA
GCCCAGGGATTGTTTACGGCGCTGCTTCTGCAGGTGCGTCGTACCGCTGT
GCGAGGACAGCCGTGCATGTTCCCTGTACCTTGAGTACCTCTGCTAATTC
TGTGCGCGATGTGATTCTGTGCAGGCGCCGTGCTGGGACTTATCCTGAGC
GGCCCTCTACTTGCCGTCGGGCTCGGCATAGCCGGTGCAGGCGCCGCCAT
CACTCAGGGGCCGGGAACTGTGGGTGGAGACATCGCACGATCGGCAGGCC
GGTTGGCTCAAAACAGGTTGGTGTTGGTGGCTTCCATTGTGCCGATTATG
CGCCATAGTGAACTGCATCAGGATCACGCACTGCTGCTGTGGGCTCAGCG
AGAATGTCTTAGTGCACTAACCGCATGCATTGGTTGATCTTGGAGAAATT
TGATGATGCACACTGAGAGCATCCACGTGGCGCTACATGCAGTGATGCTG
TTTCTGGTATCGTAATGACCTGTATCATCAGACATCAGATGTTGTAGCTG
GGGTGGGAGCTGATCATACAGCAAGAACTGGATCCGAACACGCAACACCA
GCACGCACAACATTCCATGCACATTGACCACCCTCGCACCAGAGGTACAA
CAGTACATGACTGCTGGAGCAATGAAACACACAAAACTATGGCTAGCTTC
TTGCTGCTCATACACTACATGCATGCTGAAGCACCAAAGCACAACACCAT
GGCTCGCTTGGTCGCTGCTCGTGTCTCAACTCCCCCCCGCCCCCCTCCCC
CCGGCCCCCACCCCCCCTACAATCAGCTTCGACAAGGCCAAGGAGCTGGA
GCGCAAACACGACGTCATCGCGCGCGTCAAGGGCGCCTCGCGCGACGGCC
TCGACCGCGTGCGCGCCCTCAACGACGAGCACAGAATAGTCGACAAGACC
AAGGCTGGCGCCGCCGACCTCGCGCGCCGCGCGCGCGAGCTAGATGAGCA
GCACGGCGTGCGCGATCGCGCAGCTAAGGCCATTCTAGCGGGGCTCGACA
AGGCGAACGAGCTGCTGGAGGGCAAGGACAAGAAGGAGCGCTGAGCGCTG
AGGACTGCGCAAGGGGGATGTAGGGGATATGTATGGTGCAGGATGGGG
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Coding sequence (CDS) from alignment at Contig_46:598870..600017-

>mRNA_4646 ID=mRNA_4646|Name=jgi.p|Trimin1|349633|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=489bp|location=Sequence derived from alignment at Contig_46:598870..600017- (Tribonema minus UTEX_B_3156 )
ATGGACGATCTGAGGTCGCCAGATAAGGTGGACCGGGACAAGATGAGCCC
AGGGATTGTTTACGGCGCTGCTTCTGCAGGCGCCGTGCTGGGACTTATCC
TGAGCGGCCCTCTACTTGCCGTCGGGCTCGGCATAGCCGGTGCAGGCGCC
GCCATCACTCAGGGGCCGGGAACTGTGGGTGGAGACATCGCACGATCGGC
AGGCCGGTTGGCTCAAAACAGCTTCGACAAGGCCAAGGAGCTGGAGCGCA
AACACGACGTCATCGCGCGCGTCAAGGGCGCCTCGCGCGACGGCCTCGAC
CGCGTGCGCGCCCTCAACGACGAGCACAGAATAGTCGACAAGACCAAGGC
TGGCGCCGCCGACCTCGCGCGCCGCGCGCGCGAGCTAGATGAGCAGCACG
GCGTGCGCGATCGCGCAGCTAAGGCCATTCTAGCGGGGCTCGACAAGGCG
AACGAGCTGCTGGAGGGCAAGGACAAGAAGGAGCGCTGA
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