mRNA_4690 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	jgi.p\|Trimin1\|69958
Unique Name	mRNA_4690
Type	mRNA
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )

Homology

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BLAST of jgi.p|Trimin1|69958 vs. uniprot
Match: A0A835Z020_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z020_9STRA)

HSP 1 Score: 660 bits (1704), Expect = 4.490e-237
Identity = 371/371 (100.00%), Postives = 371/371 (100.00%), Query Frame = 3

Query:   51 MQLVKAQVKEDAIRAQFQAAMAKKADLISIEVILLEDMSDCREQLVAELASTVTRVDRIDGVVAALPRSDDRSRARLYDWEDIQSLQDLLLESVQSMLDSDTKVAALRTKFEDAVRQKREVLGEIPAPSTVIEVVPEGGSGGEGAAQGSAALRPRVDLSSVSALSKDELSAAAGKSSKDAAVALGKTVAVGAQSLGDYLKSPKAQSLAATVVDLFQNTGGYFKAIGESFSVATKVFQQNTLPGEEITSFDTMFKTARDAVKSVQTSEEVAAALADVKQKGQAVPSTAGKIGQLAGEAIKDAQQNKELGTALAEALSNVQSALVALAGLGTKLASSAPPPGRMLPPSGPPGASATPIDVPSEASGGAADKSE 1163
            MQLVKAQVKEDAIRAQFQAAMAKKADLISIEVILLEDMSDCREQLVAELASTVTRVDRIDGVVAALPRSDDRSRARLYDWEDIQSLQDLLLESVQSMLDSDTKVAALRTKFEDAVRQKREVLGEIPAPSTVIEVVPEGGSGGEGAAQGSAALRPRVDLSSVSALSKDELSAAAGKSSKDAAVALGKTVAVGAQSLGDYLKSPKAQSLAATVVDLFQNTGGYFKAIGESFSVATKVFQQNTLPGEEITSFDTMFKTARDAVKSVQTSEEVAAALADVKQKGQAVPSTAGKIGQLAGEAIKDAQQNKELGTALAEALSNVQSALVALAGLGTKLASSAPPPGRMLPPSGPPGASATPIDVPSEASGGAADKSE
Sbjct:    1 MQLVKAQVKEDAIRAQFQAAMAKKADLISIEVILLEDMSDCREQLVAELASTVTRVDRIDGVVAALPRSDDRSRARLYDWEDIQSLQDLLLESVQSMLDSDTKVAALRTKFEDAVRQKREVLGEIPAPSTVIEVVPEGGSGGEGAAQGSAALRPRVDLSSVSALSKDELSAAAGKSSKDAAVALGKTVAVGAQSLGDYLKSPKAQSLAATVVDLFQNTGGYFKAIGESFSVATKVFQQNTLPGEEITSFDTMFKTARDAVKSVQTSEEVAAALADVKQKGQAVPSTAGKIGQLAGEAIKDAQQNKELGTALAEALSNVQSALVALAGLGTKLASSAPPPGRMLPPSGPPGASATPIDVPSEASGGAADKSE 371

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BLAST of jgi.p|Trimin1|69958 vs. uniprot
Match: A0A6H5KT89_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT89_9PHAE)

HSP 1 Score: 226 bits (576), Expect = 9.460e-63
Identity = 146/349 (41.83%), Postives = 220/349 (63.04%), Query Frame = 3

Query:    6 DKQQQVEQEEQLLEQMQL--VKAQVKEDAIRAQFQAAMAKKADLISIEVILLEDMSDCREQLVAELASTVTRVDRIDGVVAALPRSDDRSRARLYDWEDIQSLQDLLLESVQSMLDSDTKVAALRTKFEDAVRQKREVLGEIPAPSTVIEVVPEGGSGGEGAAQGSAALRPRVDLSSVSALSKDELSAAAGKSSKDAAVALGKTVAVGAQSLGDYLKSPKAQSLAATVVDLFQNTGGYFKAIGESFSVATKVFQQNTLPGEEITSFDTMFKTARDAVKSVQTSEEVAAALADVKQK-GQAVPSTAGKIGQLAGEAIKDAQQNKELGTALAEALSNVQSALVALAGLGTK 1043
            +KQ ++E+E+ LL QMQ   ++ QV E +IRA  + AMAKKAD+ SIEV+LLED+ +C+E+L  EL ST  R + ++GVVAALP   D +R R Y+W+D+Q LQ++L+ S +SM  SD +V  LRT+  D+V+QK+EVLGE+    +  E+V  GG GG GA + + A   +        LS++EL  A  +SSK+ A+ + K+V+ G  SLGDYL+SP  Q +AA+ V +     G   ++  +F  A K F +N + GEE+TSFD + K+ + ++K+VQ S  V A L +      + VP  + ++G    EAIK A  N E+   + +AL +++  +V+LA LGTK
Sbjct:  205 EKQAEIEKEQDLLAQMQASALRGQVDEASIRAPIETAMAKKADVTSIEVMLLEDLVECKEKLEEELKSTSARAETMNGVVAALPAEGDIARLRAYNWQDVQDLQEVLVSSAESMEASDAQVGLLRTRLLDSVQQKKEVLGEV----SKAELVAGGGRGGRGAKKMTTARAFQASTE----LSEEELLQAVTESSKNTALGVAKSVSAGTSSLGDYLRSPAGQDVAASTVLVIGALAGAAASVANAFKAAKKEFDENAVSGEELTSFDKILKSLQSSLKAVQESPAVKAELREAGDLLTKQVPQASARVGAGTAEAIKGAVTNSEISNPVKDALDSLEEFVVSLAALGTK 545

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BLAST of jgi.p|Trimin1|69958 vs. uniprot
Match: D7FTP6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTP6_ECTSI)

HSP 1 Score: 218 bits (555), Expect = 2.230e-61
Identity = 135/332 (40.66%), Postives = 202/332 (60.84%), Query Frame = 3

Query:   51 MQLVKAQVKEDAIRAQFQAAMAKKADLISIEVILLEDMSDCREQLVAELASTVTRVDRIDGVVAALPRSDDRSRARLYDWEDIQSLQDLLLESVQSMLDSDTKVAALRTKFEDAVRQKREVLGEIPAPSTVIEVVPEGGSGGEGAAQGSAALRPRVDLSSVSALSKDELSAAAGKSSKDAAVALGKTVAVGAQSLGDYLKSPKAQSLAATVVDLFQNTGGYFKAIGESFSVATKVFQQNTLPGEEITSFDTMFKTARDAVKSVQTSEEVAAALADVKQK-GQAVPSTAGKIGQLAGEAIKDAQQNKELGTALAEALSNVQSALVALAGLGTK 1043
            MQ ++ QV E +IRA  + AMAKKAD+ SIEV+LLED+ +C+E+L  EL ST  R D ++GVVAALP   D +R R Y+W+D+Q LQ +L+ S +SM  SD +V  LRT+  D+V+QK+EVLGE+     V           EG  +G+  +       + + LS++EL  A  +SSK+ A+ + K+V+ G  SLGDYL+SP  Q +AA+ V +     G   ++  +F  A K F +N + GEE+TSFD + K+ + ++K+VQ S  V A L +      + VP  + ++G    EAIK A  N E+   + +AL +++  +V+LA LGTK
Sbjct:    1 MQALRGQVDEASIRAPIETAMAKKADVTSIEVMLLEDLVECKEKLEEELKSTSARGDTMNGVVAALPAEGDIARLRAYNWQDVQDLQGVLVSSAESMEASDAQVGLLRTQLMDSVQQKKEVLGEVSKAELV-----------EGGGRGARKMTTARAFQASTELSEEELLQAVTESSKNTALGVAKSVSAGTSSLGDYLRSPAGQDVAASTVLVIGALAGAASSVANAFKAAKKEFDENAISGEELTSFDKILKSLQSSLKAVQESPAVKAQLREAGDLLTKQVPQASARVGAGTAEAIKGAAANSEISNPVKDALDSLEQFVVSLAALGTK 321

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BLAST of jgi.p|Trimin1|69958 vs. uniprot
Match: A0A7S1TQM2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TQM2_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 1.200e-15
Identity = 93/348 (26.72%), Postives = 164/348 (47.13%), Query Frame = 3

Query:   30 EEQLLEQMQLVKAQVKEDAIRAQFQAAMAKKADLISIEVILLEDMSDCREQLVAELASTVTRVDRIDGVVAALPRSDDRSRARLYDWEDIQSLQDLLLESVQSMLDSDTKVAALRTKFEDAVRQKREVLGEIPAPSTVIEVVPEGGSGGEGAAQGSAALRPRVDLSSVSALSKDELSAAAGKS---SKDAAVALGKT-VAVGAQSL---GDYLKSPKAQSLAATVVDLFQNTGGYFKAIGESFSVATKVFQQNTLPGEEITSFDTMFKTARDAVKSVQTSEEVAAALADVKQKGQAVPSTAGKIGQLAGEAIKDAQQNKELGT---ALAEALSNVQSALVAL--AGLG 1037
            EE LL +++ ++A  +E  +  Q + A  KKA+LI IE  LL D+    EQL  ++ ++   +D++    +++P+ D    A  + WEDI+SLQ+ L +++    + +  +  LR + E A  Q+   LG  P P         G S  +   + + AL  R +   +  L  D  SA   K    ++DA V  G   V+VG+  L    ++L++  A      +  + +N G +FK + E  + A  V+ +      +  S D           +V+ S+ V+ A  D ++  +   +  GK      + +++A  ++ + T   ALAEAL   ++A  AL  AGLG
Sbjct:  159 EENLLVELERIRADEQELVVLRQLENACNKKAELIGIETSLLVDLESINEQLAKDIDTSEVVMDKLSLAASSMPKEDSAEAASAFSWEDIESLQEQLSDAISITQEGERHLDQLRDRLEVAEAQRAIALGLTPPPPRA------GRSTADAEEERTEALAVRNEK--LLRLDDDLQSADGSKLLNVARDATVGSGGAIVSVGSSGLRATNEFLQTEGASEAGEALGSVARNLGNFFKGVQEGIAAAADVWAKGEDEVNKANSIDEFAVAMAKRFAAVRDSKAVSGAFKDAREGVRGASNDLGKAASGISKGVEEASGSESVATLKQALAEALEYGRAAGYALGKAGLG 498

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|69958 vs. uniprot

BLAST of jgi.p|Trimin1|69958 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4


Match Name	E-value	Identity	Description
A0A835Z020_9STRA	4.490e-237	100.00	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
A0A6H5KT89_9PHAE	9.460e-63	41.83	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
D7FTP6_ECTSI	2.230e-61	40.66	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A7S1TQM2_9STRA	1.200e-15	26.72	Hypothetical protein (Fragment) n=1 Tax=Phaeomonas...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_46	contig	Contig_46:887985..894481 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Properties


Property Name	Value
ProteomeId	Trimin1\|69958\|CE69957_417
Max annot lvl	2759\|Eukaryota
EggNOG OGs	2C8GG@1\|root,2T1QJ@2759\|Eukaryota
Evalue	1.46e-63
Seed ortholog	2880.D7FTP6
Hectar predicted targeting category	other localisation
Ec32 ortholog description	expressed unknown protein
Ec32 ortholog	Ec-06_009360.1
TranscriptId	70280
Track	FilteredModels1
ProteinId	69958

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|69958	gene_4690	Tribonema minus UTEX_B_3156	gene	Contig_46 887985..894481 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|69958	Trimin1\|69958\|CE69957_417	Tribonema minus UTEX_B_3156	polypeptide	Contig_46 888035..894298 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
exon_4690_1	exon_4690_1	Tribonema minus UTEX_B_3156	exon	Contig_46 887985..888106 +
exon_4690_2	exon_4690_2	Tribonema minus UTEX_B_3156	exon	Contig_46 889235..889414 +
exon_4690_3	exon_4690_3	Tribonema minus UTEX_B_3156	exon	Contig_46 890043..890150 +
exon_4690_4	exon_4690_4	Tribonema minus UTEX_B_3156	exon	Contig_46 890628..890666 +
exon_4690_5	exon_4690_5	Tribonema minus UTEX_B_3156	exon	Contig_46 891499..891708 +
exon_4690_6	exon_4690_6	Tribonema minus UTEX_B_3156	exon	Contig_46 892517..892699 +
exon_4690_7	exon_4690_7	Tribonema minus UTEX_B_3156	exon	Contig_46 893540..893662 +
exon_4690_8	exon_4690_8	Tribonema minus UTEX_B_3156	exon	Contig_46 894098..894481 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
UTR5_4690	UTR5_4690	Tribonema minus UTEX_B_3156	five_prime_UTR	Contig_46 887985..888034 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
CDS_4690	CDS_4690	Tribonema minus UTEX_B_3156	CDS	Contig_46 888035..888106 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
UTR3_4690	UTR3_4690	Tribonema minus UTEX_B_3156	three_prime_UTR	Contig_46 894299..894481 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Contig_46:887985..894481+
coding sequence from alignment at Contig_46:887985..894481+

spliced messenger RNA

>mRNA_4690 ID=mRNA_4690|Name=jgi.p|Trimin1|69958|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1349bp|location=Sequence derived from alignment at Contig_46:887985..894481+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
TCGCGGACAAGCAGCAGCAGGTGGAGCAGGAGGAGCAGCTGCTGGAGCAG
ATGCAGCTGGTCAAGGCGCAGGTGAAGGAGGACGCGATACGCGCGCAGTT
TCAGGCGGCCATGGCCAAAAAGGCCGACCTCATCTCCATCGAGGTGATCC
TGCTGGAGGACATGAGCGACTGCCGCGAGCAGCTCGTGGCGGAGCTGGCG
TCCACCGTGACGCGCGTCGACAGGATAGACGGCGTCGTGGCGGCGCTGCC
GCGCAGCGACGACCGCTCGCGCGCGCGCCTGTACGACTGGGAGGACATCC
AGAGCCTGCAGGACCTCCTGCTGGAGAGCGTGCAGTCCATGCTGGACAGC
GACACCAAGGTGGCAGCGCTCCGCACCAAATTTGAGGATGCCGTGCGCCA
GAAGCGCGAGGTCCTGGGGGAGATTCCTGCACCCAGCACCGTGATAGAGG
TGGTTCCGGAGGGCGGCAGCGGCGGCGAGGGCGCCGCGCAGGGCAGCGCC
GCGCTGCGACCTCGCGTCGACCTGTCGTCGGTTTCGGCGCTGTCCAAGGA
CGAGCTGAGCGCTGCCGCGGGTAAGAGCAGCAAGGACGCCGCCGTGGCCC
TGGGCAAGACGGTCGCCGTGGGCGCGCAGTCGCTAGGCGACTACCTCAAG
AGCCCCAAGGCTCAGTCGCTGGCCGCCACCGTGGTGGACCTGTTCCAGAA
CACAGGCGGCTACTTCAAGGCCATTGGCGAATCCTTCTCCGTCGCGACCA
AGGTGTTCCAGCAGAACACGCTGCCCGGCGAGGAGATCACGTCTTTCGAC
ACCATGTTCAAGACGGCGCGCGACGCGGTGAAGTCCGTTCAGACATCCGA
AGAGGTGGCTGCGGCGCTCGCCGACGTAAAGCAGAAGGGGCAGGCAGTGC
CCTCCACCGCTGGCAAGATCGGCCAGCTCGCGGGGGAGGCCATCAAGGAC
GCACAGCAAAACAAGGAGCTCGGCACGGCGCTCGCGGAGGCGCTGTCCAA
CGTCCAGAGCGCGCTCGTGGCGCTGGCGGGGCTGGGCACGAAGCTCGCGT
CCAGCGCGCCCCCCCCGGGCCGCATGCTGCCCCCCTCCGGACCGCCCGGC
GCATCGGCAACACCGATTGACGTGCCGAGTGAGGCCTCGGGTGGCGCTGC
CGACAAGTCAGAATGAGGGGATGGCTAGAGGAGAGCTTGTGTGATTGTTT
CGGGGCGGCGCTGCGGCTGTGGGGAGTGAAGGGCGGGCGCTGGTGGCGTG
CGCGCGCGCGCTTTACATGCATTTTCAACTGTCGTTCATCATAGTGCGTT
ATGGAAACAAATAGAAGTCCAGCAGCGCTGGTGCATGGTTATGCTGGGC

protein sequence of jgi.p|Trimin1|69958

>Trimin1|69958|CE69957_417 ID=Trimin1|69958|CE69957_417|Name=jgi.p|Trimin1|69958|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=372bp
MQLVKAQVKEDAIRAQFQAAMAKKADLISIEVILLEDMSDCREQLVAELA
STVTRVDRIDGVVAALPRSDDRSRARLYDWEDIQSLQDLLLESVQSMLDS
DTKVAALRTKFEDAVRQKREVLGEIPAPSTVIEVVPEGGSGGEGAAQGSA
ALRPRVDLSSVSALSKDELSAAAGKSSKDAAVALGKTVAVGAQSLGDYLK
SPKAQSLAATVVDLFQNTGGYFKAIGESFSVATKVFQQNTLPGEEITSFD
TMFKTARDAVKSVQTSEEVAAALADVKQKGQAVPSTAGKIGQLAGEAIKD
AQQNKELGTALAEALSNVQSALVALAGLGTKLASSAPPPGRMLPPSGPPG
ASATPIDVPSEASGGAADKSE*

mRNA from alignment at Contig_46:887985..894481+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4690 ID=mRNA_4690|Name=jgi.p|Trimin1|69958|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=6497bp|location=Sequence derived from alignment at Contig_46:887985..894481+ (Tribonema minus UTEX_B_3156 )
TCGCGGACAAGCAGCAGCAGGTGGAGCAGGAGGAGCAGCTGCTGGAGCAG
ATGCAGCTGGTCAAGGCGCAGGTGAAGGAGGACGCGATACGCGCGCAGTT
TCAGGCGGCCATGGCCAAAAAGGTGAGGGGTGATAAGTACCTGCAACTTC
ATGGTGGTGGCATATGTGCAGCTGGTATGTATACCTCCGCGTAAGCACAC
GGGGATACAGGCTCGAAGCGCCACAGTGCCAGGCGGCTATGACTGAGAGC
GAGAGCGACTGTTGATGGCATGTACGCAGTACTGTATGCGCGTAGCCTAG
GATAGCACGCGCGAGCTCTGAGGGTTAGGTCTAGTGCTAGGTTTAAACGA
CGTTGGTATTGCCACGCGCAATATGAGGGAGTTGTGGCTAAGAAGGTCAA
GCGGGGCATGGTGGAGACGACTTGATGAGTTTGTGCAGCTGGCGTGTATG
TATGATGCCGTACATGACAACGCCCAAGACTTCCACACACCATTAGGGTA
GGGTATGGCAATAAGGGGGGGGGGGGTGTAGTAGTGTGGAGGCGGTTTGA
TGACCAGCTGGTGTGTGCGTGCACATACGGGGACATGAGGATCTTGAGGT
CAGGGTTAGGGTTTAGGGGCATGGATAGTGTGGCACATTTCATGATGGCG
GCATGCGTGCAGCTGGTATGCGCATGTGCGTGTTGAGCGAGGGTTCTCAG
GGTTAGGGTAGTATAGGTACAGTGGTCGGGTAAGGGCAACACTTGCATGC
GCCGCCTTCTGCTTTCGCCAGACTAACCTGACTGCTGTGGCAGTCACTGT
GACGATGGGTGTAAGCTTCCACAGGCACACCATTCGATACTCATGTGACT
ACACACAGCATGGTGAGAAATTGGTCCCTACTATCACCACTCGTAACTGC
CACTTTTACGACACACAGCGGAGCTTCAAACACGAGAAAGCCCCGCAAAA
CATTACATGCTCAAGCGGCCCTCAGCAGGGCTGCGGCAGCGCTCAGCCCA
CATGGCCACCACACTGCAGGGACTACTTGCGTCTGCAGCGCACGCCTCTC
CCCAAGGGGGGCGGCGCCAAAGCCCACGTCGCCGCTCACACACCAAACCC
ACCTTGTATCAGCGGCGCCGATCGTGCTTAAAGGGCCGCAATTCGCAGCA
GGCACAGGCGCCATTCACTCGCATGTGGTGACGCTCCCACTCCAGCGCTG
AGCGCTGACGGGCTGTCATCACCCCCCCCCACCCCCCCCCCGCCGTGCAG
GCCGACCTCATCTCCATCGAGGTGATCCTGCTGGAGGACATGAGCGACTG
CCGCGAGCAGCTCGTGGCGGAGCTGGCGTCCACCGTGACGCGCGTCGACA
GGATAGACGGCGTCGTGGCGGCGCTGCCGCGCAGCGACGACCGCTCGCGC
GCGCGCCTGTACGACTGGGAGGACATCCAGGTCAGGGGCGCCGCCGCCGC
TGCATGCGTAGACATGTGCTGTAGTGATGCTTTTTGAAGTGTCACAGTTC
AGAGCTGTGCCGAGCGCTGCTGCAAGCACGCGTGCGCTGAGCGCTGCCTG
TAGTTGTGTTGAGCGCTGCCATGCACACGGGCTGAGCGCTGCTGCCTGCG
CACGGGCTGAGCGCTGCTGCCTGCTGTGCGCATGTGTTGAGCGCTGCTGC
CTGCACGCATGTGTTGAGCGCTGCTGAGCACGCCACGCCGCGCAGCGCCA
CGGCGTCGTCTGTTGGGTCGGTGAAGCGGACGACGCATGCCACCGTGCCA
TCGTATGAATGAGCTCGGTATGGTGGGAGACATGGCTGGCGCAATTCCAG
TTTTGGTTGGGAGCCTGGCGCACTTCCCTCTCTGCCATCATATAGCTGCC
TGAACACGTGCTGAGCGTTGCTGGGCACGTCAGCCAGTGCTCGCGTTCAC
TCTCGCCTGTTGCCTGGAACTGTGTGTCTGCCATGGTCGCACAATAGGCC
GTCAATTCAGCTTAGCCTCGCGCACCACCGATGCCGCGCCAATCATCTCA
ACACCGCCTGTGCGCTCCTGCGCTCTCCCCCTGCTGCCCCCTCTTTCGCC
CCCTGCAGAGCCTGCAGGACCTCCTGCTGGAGAGCGTGCAGTCCATGCTG
GACAGCGACACCAAGGTGGCAGCGCTCCGCACCAAATTTGAGGATGCCGT
GCGCCAGAAGCGCGAGGTGCGTGCGTTGCCAAAGTACCCCTACATGAATG
GAGTGCTGTCAGGGGGGGGAGGGAGGAGAGGGGGGAGCGGCGACCTGTAG
CTTGCGTGCCGGAGCGATTGCGCCTGTCGGCAGCACTGCTGTGAGCGTTG
CGTGGTAAGGAGAGTCGCACTACAGGCGCGGGGCAGCAGCAGCACATACC
ACCTCCATATATAATGGTCGCTGCACAGCGGAGGCATGTAGTGACAGCAG
GGGGGGGGGCGGCACGGTGACAGTCGACCGCGAGGAAATACTTGACGTAA
AGTGCACTTCTTCGAGTTGACCTGTCCTGCTACGAGTGATGTGAGACCGC
CAGTGTCCTTGATCGAGTCATAGTCATGACTGAGAAATTTCTGGTGCGGG
GCGACCATGCAGCACATCCATGATGATGACGTGTCGCCATCGTGGGCGTT
GCTGACATTGCTGTTCATGCTGTTCTTGTCTCTGGCCTCACAGGTCCTGG
GGGAGATTCCTGCACCCAGCACCGTGATAGAGGTAAGCCGCTTAGGCCGT
GTCAAGTTTGCGTTCGGTGTGATGAGAGCTATAATGAAGGGGGGCTGCAC
AGGGCACCTGGGAGGCTTGTAATTGAGCCCCTATTGTGGGCCGTTGCAAA
CAAAAATTGAACCAAGCGGGATTTCAAAGCAGACAATGGCCTGGTGTATT
GAGCAAGATTGATGCTGCTGCTTCTACATGCGCTCCGTCGTCCATCCACG
TCGGTCGATGTCTTGATGATACATTTACATTTGGCAACGACGCGTTGCTT
TCAACCTCGCCTTGTCCATCCGGTCGCGTGTGGTGGGACGACAATGTCTG
CAGCATGCTGCTCGAGGCAGCAGCAGCAGCAGCAGCACCAAGTCGCAAAT
GCTGTCAGCCGCCGCGGAAGCACTTGCCGAGCTGCGCAGGGCGGTGCAAG
TCAGCAGCATAGCAACCGTTGTGGCAGCGTGGCTCAGTCCCTGTGCGTAA
TTTACTTGCGTATTTGCCGCTTGCTGCCGCAGACACTGCGCGAGCATGTA
TCTTCAGTCTCCGCGCGCACTGCTAAACACGCTTGCGCAACAGCCGCACC
TGCATCGACAGCGGCACGCCCTCCGCGTGTGCCCAGCAGTTACTCTTTGC
CACCACGCACTTCTCACCGTTTCCTTCAAGAACTTGCCAGAACTTACTGG
AGAAACCCCTAGAACTGGACCGTGTCCTACCCCTAGGGTATACATGAAGC
ATCGAACCATATCATATTCCACTTGCGGCTAACCATCCTTTGTCACCTAG
AGCTCAACGATCTTTTGATTCGTTTTTCATTCCAACACCCTGCCGCTACA
AACACCTGATTTAGGTGGTTCCGGAGGGCGGCAGCGGCGGCGAGGGCGCC
GCGCAGGGCAGCGCCGCGCTGCGACCTCGCGTCGACCTGTCGTCGGTTTC
GGCGCTGTCCAAGGACGAGCTGAGCGCTGCCGCGGGTAAGAGCAGCAAGG
ACGCCGCCGTGGCCCTGGGCAAGACGGTCGCCGTGGGCGCGCAGTCGCTA
GGCGACTACCTCAAGAGCCCCAAGGTGCGTGCTGAACATCAGCAGTTGAC
AGTGCTGCATCGGGGAGTCGGCAAGATCGGGGCCTCGAATGAGCGCGGCT
GTGGTCACGAGAAGCGGGAAGGCTGGTATGTGACGTGTGATGAAATGGTG
GCTGCGGGAGGTCAGCGTCATCACCACCTGCTAGCACCTGGCGACTGTGA
GCTGTTAGTCTGCACACTGGTGTGTCAAGGGCGTTTCCAGGCACTGCGAC
GTCCATGCGGAGCTTGCTCAGAGCTAACTGGCGGTGCGCGATCTGCTGGC
GGTGAAGTGGCCATGCTGGAGATGCGTGTGGTCATGAGCTGCTGCTCTCG
AGAAATACGGTCCACGTATGACCTTGTTGCCACTTGATTGAGGCGCGCAG
CACTGATTGCCACCGCAACGGTCCTGCTCTAGAACGTTGTGCATGGTGAG
TGGCAGAAGGGGCGTATGTATGTATATGTGAGTGGCAGAAGGCAACTGGC
AGAAGGGGTGTAAGTACAAGTGAGTGGCAGAAGGGGTGTGAATATGTATA
CATATGTTGGAAGTATACGTAATGGGTACTGAGTGCACTGCCTCTTGAGC
GGGCACTCTGCACCCTCAATTCACCCACCATCACTGCAAAACAAACGTGG
AACTCACGACATTGTCATGGGGCGTCCCACAGTCTACCGCGGCGGCCAGG
AGTTGGCTAGGAGCTTTGCTTTATTCAAATAGGTGTTGTCACTCATGTAC
ATGGCGCGATATGCAACGTCCCACAGTATCTTGCAAGAGTGAGCACTGAC
TTCAAAGCGCTGCTCGCGACCTCGCGCCGCAGGCTCAGTCGCTGGCCGCC
ACCGTGGTGGACCTGTTCCAGAACACAGGCGGCTACTTCAAGGCCATTGG
CGAATCCTTCTCCGTCGCGACCAAGGTGTTCCAGCAGAACACGCTGCCCG
GCGAGGAGATCACGTCTTTCGACACCATGTTCAAGACGGCGCGCGACGCG
GTGAAGTCCGTTCAGGTGAGGCGCGGCGCGTTGTCGCGACTGTCTTTGCC
ACTGCGGTTGAACTGCTGCAAAAACTTGAAGTTCCATCAAAACAAGTGTG
CACGGCAACTGTCGCAGACGGGCCTCAAATTAGTTCAGGACGCAGCTGAG
TGTGTCGCGGTTGCTGGAATTTGACAAGTTGAACTGGCATCATGTTGCCG
GGCAAGGAGATCGCGTGCTTTGACACCCTGTTCAAGACGGCGCGCAATGC
GGTGAAGTCTGTTCAGGTGAGGCGCGGCGCGTCGGCGCGACTGCGCTGCA
ATTGCAGTTGAACAACTTAAAAAACGCGGAGTATATCACGACAGAGTGGG
CACGGTGACCTTCACAGACGGGCCTCACGCCAGTTCAGGATGCAGCTGAG
TGTGCCCTGATACATGAGCATATTATAACTTATGTTTGCGTCAGGATGCT
GGGCACGGATTCAACATCCGTTGACATCATTTTTCAAGATGGTGTGGGGC
TCGGTCGAGTGCGGTCAGGTAGGGCGTGATGCGCCTTGCTGCGTTGCAAC
AGGAGTAGTTGAACTACTTGAAAGTTGCGTAGAGTTCCACAACACATGAT
AGCAACTGGAGCAGCTCGACACCTCAGTTTGTCAACAGTACCTGGGGCAT
CAGTGCTGCAGGCAGCCCTTGACACCATGGTTCAAGAAGTCAGCAAGTCT
GTCCAGTTTCATTAGCGTGGCTTCCTGGCGCAATCAAAATGGCCAGCAGC
AGAGTCTGCATTGATTCATGCAGCATGCTGCAACTATAGTGACAGCTGGT
GATTTTCTTGAGTCACGTCTGTCCATGTTTATAACTTGACCGTGACTCTC
CGCAGACATCCGAAGAGGTGGCTGCGGCGCTCGCCGACGTAAAGCAGAAG
GGGCAGGCAGTGCCCTCCACCGCTGGCAAGATCGGCCAGCTCGCGGGGGA
GGCCATCAAGGACGCACAGCAAAACAAGGTCAGGGCGTTGAAGTATGTAG
CTTCATGCATGAACTGCTTCCAGAGACCGGTCACAGTGCGCAAAACCATG
CACGTGAAACTGCGTGTACCTTTGAGCCGGTCCGAGAGCTGCAGTTTAGT
TCTGGTAGCTTCATGAGGAGGACATGCTGCCGTGCGCGTCAACTGGCAGT
GCGTCTAGGGGGCACATATGCAAATCGTGTCGCAAGCCCTCCCGGCGGCG
CCGCGCCACATCTCAAACCGCACGCGTGCACGCAGCGCGGCAAGCACTGA
GCACAGCTGCACGTGGCGGCGCTCGCTCCTTCACTGCCCTCGCCCCGCTT
GCCATCACACACCTCGCATCACAACCAGCACCTCCCGCGCACCAGCACGT
GCGCTGACGACCGACACGCGCATACCTACCCCTTTCTCCCGCACCACCAT
CCACAACGCTCAGGAGCTCGGCACGGCGCTCGCGGAGGCGCTGTCCAACG
TCCAGAGCGCGCTCGTGGCGCTGGCGGGGCTGGGCACGAAGCTCGCGTCC
AGCGCGCCCCCCCCGGGCCGCATGCTGCCCCCCTCCGGACCGCCCGGCGC
ATCGGCAACACCGATTGACGTGCCGAGTGAGGCCTCGGGTGGCGCTGCCG
ACAAGTCAGAATGAGGGGATGGCTAGAGGAGAGCTTGTGTGATTGTTTCG
GGGCGGCGCTGCGGCTGTGGGGAGTGAAGGGCGGGCGCTGGTGGCGTGCG
CGCGCGCGCTTTACATGCATTTTCAACTGTCGTTCATCATAGTGCGTTAT
GGAAACAAATAGAAGTCCAGCAGCGCTGGTGCATGGTTATGCTGGGC

Coding sequence (CDS) from alignment at Contig_46:887985..894481+

>mRNA_4690 ID=mRNA_4690|Name=jgi.p|Trimin1|69958|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1116bp|location=Sequence derived from alignment at Contig_46:887985..894481+ (Tribonema minus UTEX_B_3156 )
ATGCAGCTGGTCAAGGCGCAGGTGAAGGAGGACGCGATACGCGCGCAGTT
TCAGGCGGCCATGGCCAAAAAGGCCGACCTCATCTCCATCGAGGTGATCC
TGCTGGAGGACATGAGCGACTGCCGCGAGCAGCTCGTGGCGGAGCTGGCG
TCCACCGTGACGCGCGTCGACAGGATAGACGGCGTCGTGGCGGCGCTGCC
GCGCAGCGACGACCGCTCGCGCGCGCGCCTGTACGACTGGGAGGACATCC
AGAGCCTGCAGGACCTCCTGCTGGAGAGCGTGCAGTCCATGCTGGACAGC
GACACCAAGGTGGCAGCGCTCCGCACCAAATTTGAGGATGCCGTGCGCCA
GAAGCGCGAGGTCCTGGGGGAGATTCCTGCACCCAGCACCGTGATAGAGG
TGGTTCCGGAGGGCGGCAGCGGCGGCGAGGGCGCCGCGCAGGGCAGCGCC
GCGCTGCGACCTCGCGTCGACCTGTCGTCGGTTTCGGCGCTGTCCAAGGA
CGAGCTGAGCGCTGCCGCGGGTAAGAGCAGCAAGGACGCCGCCGTGGCCC
TGGGCAAGACGGTCGCCGTGGGCGCGCAGTCGCTAGGCGACTACCTCAAG
AGCCCCAAGGCTCAGTCGCTGGCCGCCACCGTGGTGGACCTGTTCCAGAA
CACAGGCGGCTACTTCAAGGCCATTGGCGAATCCTTCTCCGTCGCGACCA
AGGTGTTCCAGCAGAACACGCTGCCCGGCGAGGAGATCACGTCTTTCGAC
ACCATGTTCAAGACGGCGCGCGACGCGGTGAAGTCCGTTCAGACATCCGA
AGAGGTGGCTGCGGCGCTCGCCGACGTAAAGCAGAAGGGGCAGGCAGTGC
CCTCCACCGCTGGCAAGATCGGCCAGCTCGCGGGGGAGGCCATCAAGGAC
GCACAGCAAAACAAGGAGCTCGGCACGGCGCTCGCGGAGGCGCTGTCCAA
CGTCCAGAGCGCGCTCGTGGCGCTGGCGGGGCTGGGCACGAAGCTCGCGT
CCAGCGCGCCCCCCCCGGGCCGCATGCTGCCCCCCTCCGGACCGCCCGGC
GCATCGGCAACACCGATTGACGTGCCGAGTGAGGCCTCGGGTGGCGCTGC
CGACAAGTCAGAATGA