mRNA_18879 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|354713 vs. uniprot
Match: A0A836CCC5_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCC5_9STRA) HSP 1 Score: 307 bits (786), Expect = 1.160e-105 Identity = 155/155 (100.00%), Postives = 155/155 (100.00%), Query Frame = 1
Query: 1 WPLQGRQRVLPERRAFQRHLLSCVRSSQAVAGSWSRGRRTSSASPARSGGHGRCSCSVAHTPADVIKTRLQVVAREGEATYRGISDCAAHIFAVTLWAYELLHKAVSSADPALQPRPPTNAPIEVGDYRDAFRRAHVSKRLDDIHNLIENLSNVK 465
WPLQGRQRVLPERRAFQRHLLSCVRSSQAVAGSWSRGRRTSSASPARSGGHGRCSCSVAHTPADVIKTRLQVVAREGEATYRGISDCAAHIFAVTLWAYELLHKAVSSADPALQPRPPTNAPIEVGDYRDAFRRAHVSKRLDDIHNLIENLSNVK
Sbjct: 1 WPLQGRQRVLPERRAFQRHLLSCVRSSQAVAGSWSRGRRTSSASPARSGGHGRCSCSVAHTPADVIKTRLQVVAREGEATYRGISDCAAHIFAVTLWAYELLHKAVSSADPALQPRPPTNAPIEVGDYRDAFRRAHVSKRLDDIHNLIENLSNVK 155
BLAST of jgi.p|Trimin1|354713 vs. uniprot
Match: A0A835ZEV5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEV5_9STRA) HSP 1 Score: 179 bits (454), Expect = 3.030e-49 Identity = 95/118 (80.51%), Postives = 95/118 (80.51%), Query Frame = 1
Query: 181 TPADVIKTRLQVVAREGEATYRGISDCAAHI-----------------------FAVTLWAYELLHKAVSSADPALQPRPPTNAPIEVGDYRDAFRRAHVSKRLDDIHNLIENLSNVK 465
TPADVIKTRLQVVAREGEATYRGISDCAAHI FAVTLWAYELLHKAVSSADPALQPRPPTNAPIEVGDYRDAFRRAHVSKRLDDIHNLIENLSNVK
Sbjct: 1019 TPADVIKTRLQVVAREGEATYRGISDCAAHIVRTEGVSALFKGAGMRVFRSSPQFAVTLWAYELLHKAVSSADPALQPRPPTNAPIEVGDYRDAFRRAHVSKRLDDIHNLIENLSNVK 1136
BLAST of jgi.p|Trimin1|354713 vs. uniprot
Match: A0A4D9D3J4_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D3J4_9STRA) HSP 1 Score: 90.5 bits (223), Expect = 3.400e-18 Identity = 46/60 (76.67%), Postives = 55/60 (91.67%), Query Frame = 2
Query: 2 GLYKGASACFLRDVPFSGIYFPAYAAAKRWLAAGAEGGELQAHHLLVAGAMAGVPAASLT 181
GLY+GASACFLRD+PFSGIYFPAYAAAKR++A A+ ++Q +HLL+AGAMAGVPAASLT
Sbjct: 685 GLYRGASACFLRDIPFSGIYFPAYAAAKRYVAGDAD--KIQPYHLLIAGAMAGVPAASLT 742
BLAST of jgi.p|Trimin1|354713 vs. uniprot
Match: A0A7S1BC97_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BC97_9STRA) HSP 1 Score: 75.1 bits (183), Expect = 4.350e-14 Identity = 44/114 (38.60%), Postives = 59/114 (51.75%), Query Frame = 1
Query: 181 TPADVIKTRLQVVAREGEATYRGISDCAAHI-----------------------FAVTLWAYELLHKAVSSADPALQPRPPTNAPIEVGDYRDAFRRAHVSKRLDDIHNLIENL 453
TPADV+KTRLQVV REGE Y G+ DC I F VTL +YE+L + + + D PPTNAP++ DY AFR + + DDI +++ N+
Sbjct: 44 TPADVVKTRLQVVTREGEMAYTGMRDCTTKILKYEGFSAFFKGSGMRVFRSSPQFGVTLVSYEMLSRWMPNTD---NYNPPTNAPVDSKDYITAFRDRGIQDKADDIDSMMTNM 154
BLAST of jgi.p|Trimin1|354713 vs. uniprot
Match: A0A7S2MQ67_9STRA (Hypothetical protein (Fragment) n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2MQ67_9STRA) HSP 1 Score: 73.6 bits (179), Expect = 9.180e-14 Identity = 38/60 (63.33%), Postives = 42/60 (70.00%), Query Frame = 2
Query: 2 GLYKGASACFLRDVPFSGIYFPAYAAAKRWLAAGAEGGELQAHHLLVAGAMAGVPAASLT 181
GLYKGA+ C LRD+PFS IYFPAY A K WL A +L+VAGAMAGVPAA LT
Sbjct: 49 GLYKGAAVCLLRDIPFSAIYFPAYTACKEWLMKRDNSTSASASNLMVAGAMAGVPAAFLT 108
BLAST of jgi.p|Trimin1|354713 vs. uniprot
Match: A0A7S2RDB5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2RDB5_9STRA) HSP 1 Score: 73.6 bits (179), Expect = 1.350e-13 Identity = 39/62 (62.90%), Postives = 47/62 (75.81%), Query Frame = 2
Query: 2 GLYKGASACFLRDVPFSGIYFPAYAAAKRWLAAGAEGGELQ--AHHLLVAGAMAGVPAASLT 181
GLYKG SAC LRD+PFS IYFPAYAA K WL ++G + A +LL+AGA+AG+PAA LT
Sbjct: 52 GLYKGVSACLLRDIPFSAIYFPAYAATKDWLTKDSDGSNRKPSATNLLMAGAIAGIPAAFLT 113
BLAST of jgi.p|Trimin1|354713 vs. uniprot
Match: A0A7S2XI43_9STRA (Hypothetical protein n=2 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XI43_9STRA) HSP 1 Score: 77.0 bits (188), Expect = 1.800e-13 Identity = 48/115 (41.74%), Postives = 60/115 (52.17%), Query Frame = 1
Query: 181 TPADVIKTRLQVVAREGEATYRGISDCAAHI-----------------------FAVTLWAYELLHKAVSSADPALQPRPPTNAPIEVGDYRDAFRRAH-VSKRLDDIHNLIENL 453
TPADVIKTRLQVV R+G+ Y G+ DCA I FA+TL AYE L + A PPTNAP++ DYR AF H +S + DDI +L+ N+
Sbjct: 1008 TPADVIKTRLQVVTRDGDVAYTGMRDCATKIYKQEGWSAFYKGSGMRVSRSSPQFAITLLAYEKLGHFLGLGFDA----PPTNAPVDPRDYRSAFPTTHAISNKTDDIDSLLRNM 1118
BLAST of jgi.p|Trimin1|354713 vs. uniprot
Match: A0A7S1BCR2_9STRA (Hypothetical protein n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BCR2_9STRA) HSP 1 Score: 75.1 bits (183), Expect = 8.310e-13 Identity = 44/114 (38.60%), Postives = 59/114 (51.75%), Query Frame = 1
Query: 181 TPADVIKTRLQVVAREGEATYRGISDCAAHI-----------------------FAVTLWAYELLHKAVSSADPALQPRPPTNAPIEVGDYRDAFRRAHVSKRLDDIHNLIENL 453
TPADV+KTRLQVV REGE Y G+ DC I F VTL +YE+L + + + D PPTNAP++ DY AFR + + DDI +++ N+
Sbjct: 841 TPADVVKTRLQVVTREGEMAYTGMRDCTTKILKYEGFSAFFKGSGMRVFRSSPQFGVTLVSYEMLSRWMPNTD---NYNPPTNAPVDSKDYITAFRDRGIQDKADDIDSMMTNM 951
BLAST of jgi.p|Trimin1|354713 vs. uniprot
Match: A0A6F9DRT9_9ASCI (Calcium-binding mitochondrial carrier protein Aralar1-like n=1 Tax=Phallusia mammillata TaxID=59560 RepID=A0A6F9DRT9_9ASCI) HSP 1 Score: 74.7 bits (182), Expect = 1.040e-12 Identity = 39/60 (65.00%), Postives = 47/60 (78.33%), Query Frame = 2
Query: 2 GLYKGASACFLRDVPFSGIYFPAYAAAKRWLAAGAEGGELQAHHLLVAGAMAGVPAASLT 181
GLYKGA AC LRD+PFS IYFPAYA K++LA + G + AH+LL+AG +AG PAASLT
Sbjct: 470 GLYKGARACLLRDIPFSAIYFPAYAHTKQYLAG--DDGHVAAHNLLLAGTIAGAPAASLT 527
BLAST of jgi.p|Trimin1|354713 vs. uniprot
Match: UPI00187CF0AE (calcium-binding mitochondrial carrier protein Aralar1-like n=1 Tax=Artibeus jamaicensis TaxID=9417 RepID=UPI00187CF0AE) HSP 1 Score: 73.2 bits (178), Expect = 1.310e-12 Identity = 41/59 (69.49%), Postives = 44/59 (74.58%), Query Frame = 2
Query: 2 GLYKGASACFLRDVPFSGIYFPAYAAAKRWLAAGAEGGELQAHHLLVAGAMAGVPAASL 178
GLYKGA ACFLRD+PFS IYFP YA K LA EGG + +LL AGAMAGVPAASL
Sbjct: 74 GLYKGAKACFLRDIPFSAIYFPVYAHCKLLLAD--EGGHVGGFNLLAAGAMAGVPAASL 130 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|354713 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_18879 ID=mRNA_18879|Name=jgi.p|Trimin1|354713|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=468bp|location=Sequence derived from alignment at Contig_444:14964..17245- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. TGGCCTCTACAAGGGCGCCAGCGCGTGCTTCCTGAGAGACGTGCCTTTCAback to top protein sequence of jgi.p|Trimin1|354713 >Trimin1|354713|estExt_Genemark1.C_Ctg_4440004 ID=Trimin1|354713|estExt_Genemark1.C_Ctg_4440004|Name=jgi.p|Trimin1|354713|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=156bp WPLQGRQRVLPERRAFQRHLLSCVRSSQAVAGSWSRGRRTSSASPARSGGback to top mRNA from alignment at Contig_444:14964..17245- Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_18879 ID=mRNA_18879|Name=jgi.p|Trimin1|354713|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2282bp|location=Sequence derived from alignment at Contig_444:14964..17245- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_444:14964..17245- >mRNA_18879 ID=mRNA_18879|Name=jgi.p|Trimin1|354713|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=468bp|location=Sequence derived from alignment at Contig_444:14964..17245- (Tribonema minus UTEX_B_3156 )back to top |