mRNA_9114 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|349493
Unique NamemRNA_9114
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
[Close]
BLAST of jgi.p|Trimin1|349493 vs. uniprot
Match: A0A836CCE7_9STRA (GYF domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCE7_9STRA)

HSP 1 Score: 426 bits (1095), Expect = 1.580e-150
Identity = 223/223 (100.00%), Postives = 223/223 (100.00%), Query Frame = 1 
Query:    1 MVKRRQEESEGTFDQDXXXXXXDTNFNEAGEVLEPFNLKNERQEGYFDTNGNFVWKMQDQETDAWLAGLDDAAMEEAIGQAQQAQRLTDLADHLMQRGLTEVYYSTKEALQDMGKDEDEATAGANGHAAQASNSSVQFEYLGKDGQVHGPFSMVQMYSWVSSGYFSGDNVVKMRPITPVGTAPTAAGTEIWMTMKRTNQDKPHLLKHKMQVVSKLALLKEGNG 669
            MVKRRQEESEGTFDQDXXXXXXDTNFNEAGEVLEPFNLKNERQEGYFDTNGNFVWKMQDQETDAWLAGLDDAAMEEAIGQAQQAQRLTDLADHLMQRGLTEVYYSTKEALQDMGKDEDEATAGANGHAAQASNSSVQFEYLGKDGQVHGPFSMVQMYSWVSSGYFSGDNVVKMRPITPVGTAPTAAGTEIWMTMKRTNQDKPHLLKHKMQVVSKLALLKEGNG
Sbjct:    1 MVKRRQEESEGTFDQDXXXXXXDTNFNEAGEVLEPFNLKNERQEGYFDTNGNFVWKMQDQETDAWLAGLDDAAMEEAIGQAQQAQRLTDLADHLMQRGLTEVYYSTKEALQDMGKDEDEATAGANGHAAQASNSSVQFEYLGKDGQVHGPFSMVQMYSWVSSGYFSGDNVVKMRPITPVGTAPTAAGTEIWMTMKRTNQDKPHLLKHKMQVVSKLALLKEGNG 223
[Close]
BLAST of jgi.p|Trimin1|349493 vs. uniprot
Match: A0A7S3YEZ5_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YEZ5_HETAK)

HSP 1 Score: 90.9 bits (224), Expect = 8.650e-19
Identity = 40/61 (65.57%), Postives = 54/61 (88.52%), Query Frame = 1 
Query:   76 FNEAGEVLEPFNLKNERQEGYFDTNGNFVWKMQDQETDAWLAGLDDAAMEEAIGQAQQAQR 258
            +N+AGE+LE FNLK++RQ+GYFD +GNFVWK+Q++E DAWLAG+D+  ME AIGQA +AQ+
Sbjct:  122 YNDAGEILESFNLKSDRQDGYFDASGNFVWKLQEKEPDAWLAGMDEHEMESAIGQAAKAQK 182
[Close]
BLAST of jgi.p|Trimin1|349493 vs. uniprot
Match: D7G8X8_ECTSI (GYF domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8X8_ECTSI)

HSP 1 Score: 86.7 bits (213), Expect = 4.860e-16
Identity = 40/55 (72.73%), Postives = 46/55 (83.64%), Query Frame = 1 
Query:   79 NEAGEVLEPFNLKNERQEGYFDTNGNFVWKMQDQETDAWLAGLDDAAMEEAIGQA 243
            NEAG+ +EPFNL+NER  GYFDTNGNFVWK +D E DAWLA +D+ AMEEAIG A
Sbjct:  140 NEAGDPIEPFNLRNERDMGYFDTNGNFVWKQEDGERDAWLAEMDEEAMEEAIGAA 194
[Close]
BLAST of jgi.p|Trimin1|349493 vs. uniprot
Match: A0A6H5JI10_9PHAE (GYF domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI10_9PHAE)

HSP 1 Score: 84.3 bits (207), Expect = 3.120e-15
Identity = 38/55 (69.09%), Postives = 46/55 (83.64%), Query Frame = 1 
Query:   79 NEAGEVLEPFNLKNERQEGYFDTNGNFVWKMQDQETDAWLAGLDDAAMEEAIGQA 243
            NEAG+ +EPFNL+NER  GY+DTNGNFVWK ++ E DAWLA +D+ AMEEAIG A
Sbjct:  129 NEAGDPIEPFNLRNERDMGYYDTNGNFVWKQENDERDAWLAEMDEEAMEEAIGAA 183
[Close]
BLAST of jgi.p|Trimin1|349493 vs. uniprot
Match: A0A812X5W5_SYMMI (Cd2bp2 protein (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812X5W5_SYMMI)

HSP 1 Score: 74.3 bits (181), Expect = 4.490e-12
Identity = 32/56 (57.14%), Postives = 46/56 (82.14%), Query Frame = 1 
Query:   76 FNEAGEVLEPFNLKNERQEGYFDTNGNFVWKMQDQETDAWLAGLDDAAMEEAIGQA 243
            FN+AGEV+EPFNL++ER+ G+FD N N+VW+    E D+WLA +D+A ME++IG+A
Sbjct:   37 FNDAGEVMEPFNLRDEREGGHFDENMNYVWQKDHGEVDSWLADMDEATMEKSIGEA 92
[Close]
BLAST of jgi.p|Trimin1|349493 vs. uniprot
Match: A0A7S4EB88_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4EB88_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 5.090e-12
Identity = 35/57 (61.40%), Postives = 44/57 (77.19%), Query Frame = 1 
Query:   76 FNEAGEVLEPFNLKNER-QEGYFDTNGNFVWKMQDQETDAWLAGLDDAAMEEAIGQA 243
            +NE GE +EPFNL+ ER  +G+FD NGNFVWK  D E DAWLA +D+AA E A+G+A
Sbjct:  100 YNEVGERIEPFNLRAERANDGFFDANGNFVWKRGDAEPDAWLASMDEAAEEAAVGEA 156
[Close]
BLAST of jgi.p|Trimin1|349493 vs. uniprot
Match: A0A4D9CQJ9_9STRA (GYF domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CQJ9_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 2.580e-11
Identity = 37/68 (54.41%), Postives = 48/68 (70.59%), Query Frame = 1 
Query:   76 FNEAGEVLEPFNLKNERQEGYFDTNGNFVWKMQDQETDAWLAGLDDAA-MEEAIGQAQQAQRLTDLAD 276
            FNEAG+ +EPFNLKNER EG+FD  GNFVWK ++   DAWLA L++   +E  IG+A  A++  D  D
Sbjct:   57 FNEAGDKMEPFNLKNERTEGFFDETGNFVWKKEEGGEDAWLASLENEEDLEARIGEAAVARKKKDDED 124
[Close]
BLAST of jgi.p|Trimin1|349493 vs. uniprot
Match: A0A7S3M4V8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M4V8_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 2.190e-9
Identity = 30/55 (54.55%), Postives = 43/55 (78.18%), Query Frame = 1 
Query:   88 GEVLEPFNLKNERQEGYFDTNGNFVWKMQDQETDAWLAGLDDAAMEEAIGQAQQA 252
            GEV+E FNL +ER+ G+FD N N+V+K +  E DAW+A +D+ AME+AIG+A +A
Sbjct:    1 GEVIEAFNLADEREGGHFDENMNYVFKKEKGEVDAWVAEMDEVAMEQAIGEAAKA 55
[Close]
BLAST of jgi.p|Trimin1|349493 vs. uniprot
Match: A0A482SSZ3_9ARCH (GYF domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SSZ3_9ARCH)

HSP 1 Score: 64.7 bits (156), Expect = 1.220e-8
Identity = 31/54 (57.41%), Postives = 42/54 (77.78%), Query Frame = 1 
Query:   97 LEPFNLKNERQEGYFDTNGNFVWKMQDQETDAWLAGLDDAAMEEAIGQAQQAQR 258
            +EPFNLKNER+ G+FD N N+V+K +  E DAW+AGL +A ME AIG+A  A++
Sbjct:    1 MEPFNLKNEREGGFFDENMNYVFKKEVGEMDAWVAGLSEAEMEAAIGEAALAEK 54
[Close]
BLAST of jgi.p|Trimin1|349493 vs. uniprot
Match: UPI0019298CCD (LOW QUALITY PROTEIN: CD2 antigen cytoplasmic tail-binding protein 2 n=1 Tax=Dioscorea cayennensis subsp. rotundata TaxID=55577 RepID=UPI0019298CCD)

HSP 1 Score: 56.6 bits (135), Expect = 7.430e-6
Identity = 29/48 (60.42%), Postives = 35/48 (72.92%), Query Frame = 1 
Query:   70 TNFNEAGEVLEPFNLKNERQEGYFDTNGNFV-WKMQDQETDAWLAGLD 210
            TNF + G  +EPFNLK ER+EGYFD NGNFV +  Q+Q  DAWL  L+
Sbjct:   99 TNFVDDGIQIEPFNLKQEREEGYFDANGNFVEYATQNQIKDAWLDNLE 146
[Close]
BLAST of jgi.p|Trimin1|349493 vs. uniprot
Match: A0A836CCR2_9STRA (Non-structural maintenance of chromosomes element 1 homolog n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCR2_9STRA)

HSP 1 Score: 440 bits (1132), Expect = 2.060e-155
Identity = 230/230 (100.00%), Postives = 230/230 (100.00%), Query Frame = 1 
Query:    1 MARAKRKASQQPEEEEEVNDNEEASQEATPTQRHNGEVLPDAVKAFLQIIMSRGALTQAQAEEALGTAIQSFGGAALNLDAVLRRANAQLKLMDLEIKGTRLQGGGGHVIYYAMANMNADEISKKHGTTMSSWRLDAFNTILDAFKPEEGATTVATGGYPVLSYDHMRTLKPKTATEVDYATFVQKLANDMWLKMEDKRGKSYSLGPRTYIELRMLLEARAIACPQLLLY 690
            MARAKRKASQQPEEEEEVNDNEEASQEATPTQRHNGEVLPDAVKAFLQIIMSRGALTQAQAEEALGTAIQSFGGAALNLDAVLRRANAQLKLMDLEIKGTRLQGGGGHVIYYAMANMNADEISKKHGTTMSSWRLDAFNTILDAFKPEEGATTVATGGYPVLSYDHMRTLKPKTATEVDYATFVQKLANDMWLKMEDKRGKSYSLGPRTYIELRMLLEARAIACPQLLLY
Sbjct:    1 MARAKRKASQQPEEEEEVNDNEEASQEATPTQRHNGEVLPDAVKAFLQIIMSRGALTQAQAEEALGTAIQSFGGAALNLDAVLRRANAQLKLMDLEIKGTRLQGGGGHVIYYAMANMNADEISKKHGTTMSSWRLDAFNTILDAFKPEEGATTVATGGYPVLSYDHMRTLKPKTATEVDYATFVQKLANDMWLKMEDKRGKSYSLGPRTYIELRMLLEARAIACPQLLLY 230
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|349493 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CCE7_9STRA1.580e-150100.00GYF domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A7S3YEZ5_HETAK8.650e-1965.57Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
D7G8X8_ECTSI4.860e-1672.73GYF domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JI10_9PHAE3.120e-1569.09GYF domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A812X5W5_SYMMI4.490e-1257.14Cd2bp2 protein (Fragment) n=1 Tax=Symbiodinium mic... [more]
A0A7S4EB88_9STRA5.090e-1261.40Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]
A0A4D9CQJ9_9STRA2.580e-1154.41GYF domain-containing protein n=2 Tax=Monodopsidac... [more]
A0A7S3M4V8_9STRA2.190e-954.55Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A482SSZ3_9ARCH1.220e-857.41GYF domain-containing protein n=1 Tax=archaeon Tax... [more]
UPI0019298CCD7.430e-660.42LOW QUALITY PROTEIN: CD2 antigen cytoplasmic tail-... [more]

Pages

back to top
BLAST of jgi.p|Trimin1|349493 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A836CCR2_9STRA2.060e-155100.00Non-structural maintenance of chromosomes element ... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_44contigContig_44:735659..743033 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|349493|estExt_Genemark1.C_Ctg_440052
BRITEko00000,ko00002,ko01009,ko03041
KEGG ModuleM00354
KEGG koko:K13099
DescriptionGYF domain
COG categoryS
Max annot lvl2759|Eukaryota
EggNOG OGs2D0TF@1|root,2SFEN@2759|Eukaryota
Evalue7.96e-17
Seed ortholog2880.D7G8X8
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionGYF
Ec32 orthologEc-15_004640.1
TranscriptId349815
TrackFilteredModels1
ProteinId349493
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|349493gene_9114Tribonema minus UTEX_B_3156 geneContig_44 735659..743033 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|349493Trimin1|349493|estExt_Genemark1.C_Ctg_440052Tribonema minus UTEX_B_3156 polypeptideContig_44 735659..743033 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_9114_8exon_9114_8Tribonema minus UTEX_B_3156 exonContig_44 735659..735763 -
exon_9114_7exon_9114_7Tribonema minus UTEX_B_3156 exonContig_44 736196..736333 -
exon_9114_6exon_9114_6Tribonema minus UTEX_B_3156 exonContig_44 736815..736852 -
exon_9114_5exon_9114_5Tribonema minus UTEX_B_3156 exonContig_44 739416..739551 -
exon_9114_4exon_9114_4Tribonema minus UTEX_B_3156 exonContig_44 740795..740855 -
exon_9114_3exon_9114_3Tribonema minus UTEX_B_3156 exonContig_44 741214..741332 -
exon_9114_2exon_9114_2Tribonema minus UTEX_B_3156 exonContig_44 742296..742339 -
exon_9114_1exon_9114_1Tribonema minus UTEX_B_3156 exonContig_44 743003..743033 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_9114CDS_9114Tribonema minus UTEX_B_3156 CDSContig_44 743003..743033 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_9114 ID=mRNA_9114|Name=jgi.p|Trimin1|349493|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=672bp|location=Sequence derived from alignment at Contig_44:735659..743033- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGAAGCGCCGGCAGGAGGAGAGTGAAGGCACCTTCGATCAGGATGA
TGATGACGATGAGGAGGACACAAATTTCAACGAGGCAGGAGAGGTGCTGG
AGCCTTTCAACCTCAAAAACGAAAGGCAGGAAGGGTACTTTGACACCAAC
GGGAACTTTGTATGGAAGATGCAAGACCAGGAGACGGATGCTTGGCTGGC
GGGACTGGATGATGCTGCCATGGAGGAGGCCATTGGACAGGCACAGCAGG
CACAGCGCCTGACGGATTTGGCGGACCATCTCATGCAAAGGGGGCTGACA
GAGGTATACTACTCCACCAAGGAAGCGCTGCAGGATATGGGCAAAGATGA
AGATGAAGCCACTGCAGGAGCCAATGGCCATGCAGCACAAGCCAGCAACA
GTAGCGTTCAGTTTGAGTACCTGGGCAAGGATGGCCAGGTGCATGGGCCG
TTCTCAATGGTCCAGATGTACTCATGGGTCTCCAGCGGCTACTTCTCTGG
CGACAACGTGGTCAAGATGCGCCCTATAACACCTGTTGGGACAGCACCTA
CAGCAGCAGGCACAGAGATCTGGATGACGATGAAGAGGACAAACCAGGAC
AAACCACACCTGCTCAAGCACAAGATGCAAGTAGTCAGCAAGCTGGCACT
GCTGAAAGAGGGGAATGGGTGA
back to top

protein sequence of jgi.p|Trimin1|349493

>Trimin1|349493|estExt_Genemark1.C_Ctg_440052 ID=Trimin1|349493|estExt_Genemark1.C_Ctg_440052|Name=jgi.p|Trimin1|349493|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=224bp
MVKRRQEESEGTFDQDDDDDEEDTNFNEAGEVLEPFNLKNERQEGYFDTN
GNFVWKMQDQETDAWLAGLDDAAMEEAIGQAQQAQRLTDLADHLMQRGLT
EVYYSTKEALQDMGKDEDEATAGANGHAAQASNSSVQFEYLGKDGQVHGP
FSMVQMYSWVSSGYFSGDNVVKMRPITPVGTAPTAAGTEIWMTMKRTNQD
KPHLLKHKMQVVSKLALLKEGNG*
back to top

mRNA from alignment at Contig_44:735659..743033-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9114 ID=mRNA_9114|Name=jgi.p|Trimin1|349493|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=7375bp|location=Sequence derived from alignment at Contig_44:735659..743033- (Tribonema minus UTEX_B_3156 )
ATGGTGAAGCGCCGGCAGGAGGAGAGTGAAGGTGGCGGTGCAGGTAATAA
GCGCCGTGTGCGCTTTGCGGAAGGTCAAGACGAGGGCTTTGAAGAAACCA
AAGGCGAGCCTAGCTATGGTAAGACATTGGGTTCAATCAACGCCAGCTGG
TCTTGCAAGTCTGCAGTAAGACCATACGCTTGCAAAATTGCCTGTCTTGT
TCGTCTCGAGCTGTTCAGCTACGCATGGTGCCACCTTTCCTAACGCTGAC
ATTGCCTCTGCTTTACTGTACGAGTTGTTCTCACTGCTCTGAATACTCGC
TCTCGATGATTGCACGTTTTCCAGATGCCCGTGCCGACGATGATGATGGC
GAGGAGGCAGCTTCAACGGCCCTGGCACGAGCCAAACCAGGTGTGTGAAA
CTCAGCGTTGACTCACGTTGGTGTTTGTGCTCTGCTCGAACTAGAAGCTT
GTTCAAGCATCCCAGCAGAAGGGCCATACTTAAAAGACGAACTGTTGCAG
AACGTTGCTTTCAGCCATGATACGCTGTGTTGACATTTTGATATATATGT
TTTTAGTGTAAAGTGTCGCCGCAAACAAAGTGCTCTCTGACCTTGTGATT
GATGCGATTTGACCCCGAAGCTGCCCACATGATTGCATCACAACTGGTCA
GATATTCGTTTTCACAGCACCGACCATGCATTTGTCTGATGCAGGCACCT
TCGATCAGGATGATGATGACGATGAGGAGGACACAAATGTGGGCAGAATG
ACACAGGACGTGGAGGGAGAGGAGGAAGATGGCGACGAAAAGGCAAGAAA
CCTACATCACGAACACACATCTACAACAGACTTGGTTGATCATGCTCAAT
GTCCAGACACTTGGTCTGCATAAATTACTACACTTGACTGAGATTGAAGT
TGCATCAAGTAGAAAGTCATACAGCCAATCCATCTCACTAGCAGTTCACC
TTCATGTAGCCATGCTGGTGCTTTGACCAAGAAAGCATATGTATCAAGTG
ATCCAGTTGGACTTGCTTGCAAAGGTGGCAGCCCGCTGGTGTGTGTAGTC
ATGACATTATACGAGAGTACCACACCAAGCCGTTGCATATTTCACCAGCA
GTCACCCGCAGATTTGTCCGTTGCAGGCAAGCAGGTAGATGCAAGTGAGT
GCTTTTGTGATAGTGGCTGCGTGCGGAAGAATCCTCCCCTGCTTATGGGC
CTGCCACTGATTCACTCTGAGGTATTTAGGTAATTGAAGGCTATGCACTG
CAACGTCAGCAGTTCCATCTGTCTATGCTAATGCAATCAGGGTGTAAGCC
TGTGCAAATGGGACACAATCTGAATGGGTACAATTGCAAGTACTCTATGA
TGCTCATTGCATCAACTGGGTGTGGCACCTCAGTTGTGTTCAGTCAGACA
GAGCGACAGTAATGCACATTGGATGCGCTTGCATCAAAAATCACCATGCA
ATGCCGACCGCTGCACAAGTCTTGTGTGGAAGGAACACCAACACCTGTGT
TTTCAGTTGTCAGGCATGTGAACTCAGTGCACTGCTGCTAATCTGTAGAG
TGCCCGTTTGTATGTTTGCAGTTCAACGAGGCACGAGAGGTGCTGGAGCC
TTTCTGTGGAAGGAACACCAACACCTGTGTTTTCAGTTGTCAGGCATGTG
AACTCAGTGCACTGCTGCTAATCTGTAGAGTGCCCGTTTGTATGTTTGCA
GTTCAACGAGGCAGGAGAGGTGCTGGAGCCTTTCAACCTCAAAAACGAAA
GGCAGGAAGGGTACTTTGACACCAACGGGAACTTTGTATGGAAGATGCAA
GACCAGGAGACGGATGCTTGGTGAGCTACTCAGTCACGCTTGCACTGCAT
GATGTGTGGCATCTCTCACAGCCTCATAGGAATAAGTTCACTTCAATGTA
TTGACCCTTGCATGCCTGCTACATGGTTGCTGTACACTCTGCAATAATGC
AATTTTGATCTGACCGGCGTTGGGTACATGTCAAGTGCCTGAGGGCTCCC
CGGTCATCATAGGTTGCCAATTATGTACACATTATACAACGCCATCTGCA
GGTGTGCAACTGACATGACTTGCCGGCATGGGGCTGATGATTGAAACTGC
TACAGCTTGCATAAACTGCTACAGCTTGCATTTGATGGCACTTTACTGCC
TGTGTATGCCTGCCACGCAACCTTACAGGCTGGCGGGACTGGATGATGCT
GCCATGGAGGAGGCCATTGGACAGGCACAGCAGGCACAGGTCAGGAAAAT
GGTCCGCATACTGTGTTACTGTGTGCATGACTGATGTAAAAGTGCGCTGA
GGTCACTGAGGTCAGAGGGTAATATGATGCTGACGGATTGCGGCTGTGAG
CCCAGGAGTTATGTCAGTTATGTGCTGCACTGATTGCGTGGTAATTGCGC
TTGGTTCAAAGGTTTGCCCTCATGTGGTAACTGGTTTTGAAGCGATTATG
CACACACTTGTACAACAGATTCACCATCATGACATTGTGGCAAACTTGAG
CACTGGAGGCAACTTTGACATGCGCATACATGTTTCCCACACTAGAGCAA
CACAAAGTTCTTTGTAGTACATGAAACCATACAAGTGCACCTGACATTTT
ATTTCAACAAGTGTAGCCCTTGACGCATACATGTACACTATGGCTCTGCA
GCAACGCAAGGACAAGGAGGATGCTGCGCAGGCCAGTGCATCGGAACGAG
ATCCGCTGACACAGCTGGACAAATCTGAGCTGGCACTACTGGCGGCCAGG
CTCATTGAACCTGGTGAAACAGTACTGAAGGCACTCAAACGACTAGGGAA
CGCCAGCAAAAGGGCAGGCCCTGGCAAGGGGGCAGGCAGGGGGAAAACAA
AAGGGGGGAAGCCTCTGGAGGAGGCGGGAGAAAGCACACCACAGCAGAAG
GAGGATGCTGCTAGGAATAAGGCTGCATTTGAGGTCAGTGGGAACAGTCA
GTAATTTTAGGAACCAATGACACAACGTCTGCCTGGTCCACATCAAATTT
AAATGCTAGCATCGAGAGGTGTCCCATGTAGGCAATCTTAGGGTGTATAC
TGCTTGTGCAGTGCACATGCTGTATGCAGCATACTGTAATGTGCTGTCAT
GGGCTGCCGCTGTTATGATATATATCGGAGTGCAGTGTGCACAATGACAA
TGGGTGAGCTGTGATGACTACACAAATGTTACGGCAGACCAGGTACACAG
GAACGTGACAGCAAAACCAGTTTATGAGTATGCAATCAACTTGTACCGCT
GACCATTACATGTCTGCTTAAGTTGGCAAAAATATCACACAAGAGACAAG
TAGGGCTAGGAATGGACCACTGTACTCGCTTTTTAGCACTGCTGGGCGGT
GTCTTGTACCATAAGTGTGGAAGTCCCACCCTGAGCACAGGCATGGGCAT
CTTGGGACATTTGATTTGCCATTACGGCAACGGTCCATTGACAGCACCCG
TGTCATGTCTGACTGTCCCCATTTCATGGCAGCGCCTGACGGATTTGGCG
GACCATCTCATGCAAAGGGGGCTGACAGAGGTATACTACTCCACCAAGGA
AGCGCTGCAGGATATGGGCAAAGATGAAGATGAAGCCACTGCAGGAGCCA
ATGGCCATGCAGCACAAGGTACGGCGAAGACTCGATGTCTTGACATGTGT
TCAATACACCAAAGTACTTTCTGTTCCAATGTCAGTATCAGGCATTTGAA
GCTGGTGGCACTTAAAGAATCCAGCATACCACATGACAGTACACTGGCGG
CGTAGCGTCACTGTATTCCCATATGCACGCGACTCAATAGCATGCGTGAT
ACAACAGCAAGTGATACAGCATGCGAATACGCATGCTATGTAGCGGACAC
AATTAAACAGCTCAACACGGCAGCAACGACTGAGAAGTTGCCCTCTTTCT
TCAACCTTTGTACTACATAGTATTGTGCTCTCACGCTTTTGCAGGCGTGG
CAGTTATGTTTCTGAACAAAAGCTTCATTCTTGGTCTGTTTCTCTGGTAG
ATGCCACCATAACGAGTCTGTTTGAATAGATCGCAAGCCTCATTGTGTAC
ACTCAAAAACTCACGCACTCTATCAGTACTTGAGGTAAACCTCCATGCTC
TAGGCCACTACACCACCTCCTGTTCGGGTTTGCAATAGTAACGGCTCATG
AAGTTGTGACACGTGAAATTCGGCTAGGCTCCGCATGTTTGATATGGTAT
CGGTGTGCCCTGCATGCTCAGAGAATGTGAGGGACATAGCCAAATACATG
ACTTGAAGTACATGTTTTGTCAAGTCAAGCTTTGGTAACATACCTACCTA
CCTACCTCGTGCACACACATGTTAGGCGGGCTACCATCTTTGACATGGTT
GTTGTCCCACTGATCATCATTAAGTGCTTTCTTACAGCATGCTCAGTCAA
GTGGCACCTTTGACGCTACTAACATCATGGTGAACATGTGTACCACATTT
ACGGTCATGATCAACATCAATGCAGCACCTACTCTGGCTGCCTTACATGA
TGAAAGAAGTGGGCAAGGCTGTATGGGTGTATGTGTGTGTGTGTGTGTGT
GTGTGTGTGTGTGTGTGTAAGTGTGTGAACAATGGCGCATTCCTGAAGTC
ACTGACGGTGCTTCTTCTGTGATGCTCATTGGTGGTGGATTGTGTTGCAG
TAGGTGCTGCTGGAGGCCAAGCAAGCATGTACTTCTCTGCAGCAAGACCA
CAAGCTGGCGACGCAGCAGCACAGGCAACAGCAGCGGCACAAGCTGCAGG
TGATGTATGTGCACTCACTACGCTGGATCTCACAGGATAGGCTAGCATGC
ATCAATTTCCCAGCAGTACTGATGTTTTGTTCGTCTTTGCTGATGTTTTG
CAAAATATCTGGGTCTCCATTACTTAACATCTACAGATTGATTGAAGACA
GTTGGTAGCACAAGTTTGTGACTGGGAGCGTATAGCTCACCAGTGTGCCA
GGGATGGATACTAAAGGGACCCAAGTGGACACAAGACTTGTGGACAGTGC
TTTTATTGCTGGAAGTGGGCACAGGGGTCAAAACATGAACAGCGACCCAT
GTGCTCAACAAGACACAACCTCATCATGTGCTGAGCTCTGCGCACTGATG
GCCAGATAAACTGATAGACAGCATTGGGCTTCGTTGCGTGCTTGCTATAG
AAGTAGGAAAAGGATCTGCGACATTAGAGTATGGACAGCTGGGTCGCCGA
AGGTCTGCTGGCAATCAAAAACACAATAAGTATGGCAGACGAGTTGACTG
AGTAGCATCATAGCTGCAATAGGTCTGAAATGACAGCACGTGACATGGCG
CTATCACACGCTAACCCCTGATGCTGCTGTTGGCAGTTACAGTCACTCAG
GTAGCGCTCGAGCGTGCTGTAAACACCTTGTGCCACTAAATATCCATACT
TTTGGTACATGGAGTTTATGTACGGTGGGGGAGTGGCGTGGCCTCCTCAA
ATGGAAGTATAATAGTATAATCCCTCCAAATGATAACCCATATGTTGAGT
TACAGCATAGCTGATGAGCGGCTTTGCGGCTATGGGAAGTATACTTACAA
GTACAATACTCCACAGAAGTACTGTTTGATTGAATACACTTGTGGTCAGG
GGCATTGAGGAGAACACCATTGTAAAGTGCCACAGCATGTTGTTCGGTTT
GCATGCAGATTAGTCTAGATAGGGAATCTCAACGTCACACGTAACCACAA
GGTGACCACTTCTTTCGTTCTCGTTGTGCATCATTCTTCTGTGAATGTGC
ATCAATTATGAAATGCCTTATAGACGCCTGCCTCTGACCCCAGATTACAT
CACATCAAATCTACAAAACCAACCGAGGCAATAAAAAAGAGTAAGTGATG
AGGCAGCTTACTTTGTTGCAGCAGCATGACATATACATCACACGAGTCCT
ATGCACTGCAGAATAGCCCATATGGCGCATGTCTATTGATGACATCAACA
GGCCATGTTAGTGAAATAGGATTCACTGCAGTGCAACACAGCCGCGCACA
CCTGGTTCCAGCAGTTGACTGCATGATGAGACGCTCATGTTACCACCAGC
ATGATCCTTGTTTTAGAGTGCTCGATACAGTGGTTGAATAACTAAAGCTG
CACGTATCCCCTTTTTTTCTGTATGTGCTGCTGATGCTTGTATGCCTCGC
TTCACAGCACAGCAAGCTGCTTATGCCGCAGCCAGCAACAGTAGCGTTCA
GTTTGAGTACCTGGGCAAGGTGAGACAACAGGCACACACAAGTGCTGTGC
TCTTCACAATACTGCAGTACGCTCGCACAGAGTTTTCGTCCGATGCATGG
TCTCTTTCTGTGGGCGCTGAAGTGCTTGACCACAAGGTGCAAATGCAGTT
TTTACGTATGTGAGCTGCGCGTAGCAGCCACGCTTGCTGTCAATACAAAG
CCGCTGTGTCGCTGTTCGATCCAGTGTTTATGCTCGCCCTTTCACGTCCA
TGGCCTGTTGTACAGATAGGTCTATCATGGCTGACACTTCACTTGTGAGT
ATGTACTTCGAAGTACTTCTTTGAGAATTGCTGCCAATGTAAATTAGAGT
TGGACAACGTACATCAGAGAGAGATGCCATTGATGCTAGGGTGTTAAGAA
GGCGTCAGTCAGTGACATGCTTATATTGGCTATACTCATAGTGGCTATAC
ACTATAGTAGCTCATGCTTGTGACTTGTGGTGATGTGTGTGTGTTGGCAG
GATGGCCAGGTGCATGGGCCGTTCTCAATGGTCCAGATGTACTCATGGGT
CTCCAGCGGCTACTTCTCTGGCGACAACGTGGTCAAGATGCGCCCTATAA
CACCTGTTGGGACAGCACCTACAGCAGCAGGCACAGAGGTGAGCATGGAC
ACACACTCTGTACACACACACATGGTGACCGTGTCAAGCTTGCCATTCAC
TGTGTGTGTTTGTATGGCCATTACTTGTCGTGTTGTACTTGCAACTTCAA
CATCAACATCACTTGACAACCCAAGGCATTGTTTACATTGCACCCGGGTG
GTTGAACTGCACATGCTCTTTTGCAGTGGAGTGTGCACTGACATGATGCT
AGCCTTTGATAGGCTCGTCATGTTATCCAATTATCTGTGAGGCATCAGCA
TCCGGGCAGAACTTAACGTTACAGACTGCAAGAGTCCTTGGCATTCACCA
TACCGCGTCAAGCACTTGAAAGATGTTAATGCTGCCTGCTCACGCCAGCG
TATGTGTACTTCGCTGATGTATGTGTGCAGGCCACCACCACTGGCGATGC
TGCTGCTGAACTGCTGGCAGATCTGGATGACGATGAAGAGGACAAACCAG
GACAAACCACACCTGCTCAAGCACAAGATGCAAGTAGTCAGCAAGCTGGC
ACTGCTGAAAGAGGGGAATGGGTGA
back to top

Coding sequence (CDS) from alignment at Contig_44:735659..743033-

>mRNA_9114 ID=mRNA_9114|Name=jgi.p|Trimin1|349493|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=672bp|location=Sequence derived from alignment at Contig_44:735659..743033- (Tribonema minus UTEX_B_3156 )
ATGGTGAAGCGCCGGCAGGAGGAGAGTGAAGGCACCTTCGATCAGGATGA
TGATGACGATGAGGAGGACACAAATTTCAACGAGGCAGGAGAGGTGCTGG
AGCCTTTCAACCTCAAAAACGAAAGGCAGGAAGGGTACTTTGACACCAAC
GGGAACTTTGTATGGAAGATGCAAGACCAGGAGACGGATGCTTGGCTGGC
GGGACTGGATGATGCTGCCATGGAGGAGGCCATTGGACAGGCACAGCAGG
CACAGCGCCTGACGGATTTGGCGGACCATCTCATGCAAAGGGGGCTGACA
GAGGTATACTACTCCACCAAGGAAGCGCTGCAGGATATGGGCAAAGATGA
AGATGAAGCCACTGCAGGAGCCAATGGCCATGCAGCACAAGCCAGCAACA
GTAGCGTTCAGTTTGAGTACCTGGGCAAGGATGGCCAGGTGCATGGGCCG
TTCTCAATGGTCCAGATGTACTCATGGGTCTCCAGCGGCTACTTCTCTGG
CGACAACGTGGTCAAGATGCGCCCTATAACACCTGTTGGGACAGCACCTA
CAGCAGCAGGCACAGAGATCTGGATGACGATGAAGAGGACAAACCAGGAC
AAACCACACCTGCTCAAGCACAAGATGCAAGTAGTCAGCAAGCTGGCACT
GCTGAAAGAGGGGAATGGGTGA
back to top