mRNA_5638 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|349372
Unique NamemRNA_5638
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|349372 vs. uniprot
Match: A0A835YT59_9STRA (ELMO/CED-12 family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YT59_9STRA)

HSP 1 Score: 961 bits (2485), Expect = 0.000e+0
Identity = 520/520 (100.00%), Postives = 520/520 (100.00%), Query Frame = 1
Query:    1 MLLHYVLQGEYDAPETGVESSLELQQEQDLTLAQLKDLFPYCGTFHFRLKVADNVGTAPHVWLDLTQEGDDIVELARNLGGIERAPRGSHEVVHVKVLPLSFDAPVLNGSDALPPDQIFDWNEDVSAAAPAAAAAAHVPAYNVEDAFVRAAAARDDAREFAEPPYLGSSGGGASRSTLHASAQGQRHVRRPSGGXXXXXXXAEGGSGHCRRPLGSSEHAVSPFDSPAQRRPSQXXXXXXXXXXXXRRGSGGMEFQQGDHDDSAQTWTASVNSTITSAINSRAAQDLKQAAKFGLGNARKFLSKINKGGAGGGGPSTLPPVSALATLDDLSHHLETPFNDGVRSHFELLSRLWGLLFPDAPPLAGNGGAVSPRWREAGFQADSVDGDLDHTGTLCLRCMVTLLSSADAPALLRANAARAPPRRYPFAVVARNVTLMLADVLRLGGRGYCEARASYWGLFERADAFEQLFCWAFRRLDAVWAERNASRDAFGQXXXXXXXXXXXALGSGPETVAAFLERAAQ 1560
            MLLHYVLQGEYDAPETGVESSLELQQEQDLTLAQLKDLFPYCGTFHFRLKVADNVGTAPHVWLDLTQEGDDIVELARNLGGIERAPRGSHEVVHVKVLPLSFDAPVLNGSDALPPDQIFDWNEDVSAAAPAAAAAAHVPAYNVEDAFVRAAAARDDAREFAEPPYLGSSGGGASRSTLHASAQGQRHVRRPSGGXXXXXXXAEGGSGHCRRPLGSSEHAVSPFDSPAQRRPSQXXXXXXXXXXXXRRGSGGMEFQQGDHDDSAQTWTASVNSTITSAINSRAAQDLKQAAKFGLGNARKFLSKINKGGAGGGGPSTLPPVSALATLDDLSHHLETPFNDGVRSHFELLSRLWGLLFPDAPPLAGNGGAVSPRWREAGFQADSVDGDLDHTGTLCLRCMVTLLSSADAPALLRANAARAPPRRYPFAVVARNVTLMLADVLRLGGRGYCEARASYWGLFERADAFEQLFCWAFRRLDAVWAERNASRDAFGQXXXXXXXXXXXALGSGPETVAAFLERAAQ
Sbjct:    1 MLLHYVLQGEYDAPETGVESSLELQQEQDLTLAQLKDLFPYCGTFHFRLKVADNVGTAPHVWLDLTQEGDDIVELARNLGGIERAPRGSHEVVHVKVLPLSFDAPVLNGSDALPPDQIFDWNEDVSAAAPAAAAAAHVPAYNVEDAFVRAAAARDDAREFAEPPYLGSSGGGASRSTLHASAQGQRHVRRPSGGXXXXXXXAEGGSGHCRRPLGSSEHAVSPFDSPAQRRPSQXXXXXXXXXXXXRRGSGGMEFQQGDHDDSAQTWTASVNSTITSAINSRAAQDLKQAAKFGLGNARKFLSKINKGGAGGGGPSTLPPVSALATLDDLSHHLETPFNDGVRSHFELLSRLWGLLFPDAPPLAGNGGAVSPRWREAGFQADSVDGDLDHTGTLCLRCMVTLLSSADAPALLRANAARAPPRRYPFAVVARNVTLMLADVLRLGGRGYCEARASYWGLFERADAFEQLFCWAFRRLDAVWAERNASRDAFGQXXXXXXXXXXXALGSGPETVAAFLERAAQ 520          
BLAST of jgi.p|Trimin1|349372 vs. uniprot
Match: D8LB26_ECTSI (ELMO domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB26_ECTSI)

HSP 1 Score: 237 bits (605), Expect = 5.310e-68
Identity = 202/541 (37.34%), Postives = 262/541 (48.43%), Query Frame = 1
Query:    1 MLLHYVLQGEYDAPETGVESSLELQQE---QDLTLAQLKDLFPYCGTFHFRLKVADNVGTAPHVWLDLTQEGDDIVELARNLGGIERAPRGSH--EVVHVKVLPLSFDAPVL-----NGSDALPPDQIFDWNEDVSAAAPAAAAAAHVPAYNVEDAFVRAAAARDDAREFAEPPYLGSSGGGASRSTLHASAQGQRHVRRPSG----------GXXXXXXXAEGGSGHCRRPLGSSEHAVSPFDSPAQRRPSQXXXXXXXXXXXXRRGSGGMEFQQGDHDDSAQTWTASVNSTITSAINSRAAQDLKQAAKFGLGNARKFLSKINKGGAGGGGPSTLPPVSALATLDDLSHHLETPFNDGVRSHFELLSRLWGLLFPDAPPLAGNGGAVSPRWREAGFQADSVDGDLDHTGTLCLRCMVTLLSSADAPALLRANAARAP-PRRYPFAVVARNVTLMLADVLRLGGRGYCEARASYWGLFERADAFEQLFCWAFRRLDAVWAERNASRDAFGQXXXXXXXXXXXALGSGPETVAAFLERAAQ 1560
            +L+ YV+QG+ D PETGV+SS  + +    + LTL +L+++FP+ GTFHFRLKV D  G + + W+DLT +GDDI+ELA NLGG+E    G H  + VH+K+LP+ F  PV      N      P Q F   E V  A        H P   ++    R  A  D+  + A        GGG        S  G R  R   G           XXXXXXX        R P+G                     XXXXXXXXXX        +   D DD   TW ASV +  +  +     +  + A   G G A+K  + INKG    GGP  +P   A+  L +L++ L TPF+   R H   L ++W  LFPD        GA SPRW+EAGFQ  +V  D   TG L L+ MV      D  AL    A  A     YP+AVVA N+TLMLADVL +    +  +R  YWG+F+R  AF ++FC AFR LD  WAER A R  FGQ            L S P  + AF+ +A +
Sbjct:    5 VLVCYVIQGDDDDPETGVQSSFRVDRPTPPRTLTLFRLREMFPFEGTFHFRLKVPDANGLSDYCWVDLTTDGDDILELAENLGGLEGGNSGGHPQQRVHLKILPIDFGGPVEHEAAENAPAEAVPAQDFYAGEGVGVA--------HGPGLGLDAPGARGQATADE--DLASGVSGMDIGGGERFDVGDHSGSGTRVARERRGERSFDVDXXXXXXXXXXXXXXXXXXXRSPVGGGSRGEHGDGGRXXXXXXXYGXXXXXXXXXXXXXXXXGAYGDDDEDD---TWKASVVNQASQGVKDFQKKTSQVAKTMGFG-AKKMWNAINKGV---GGP-VVPSEEAMENLHELANFLGTPFSATSREHVNDLGKVWMCLFPDDE----FEGAESPRWQEAGFQESNVSLDFRGTGVLALKSMVFFCQEYDRKALSLCRAQSAGGSSHYPWAVVANNLTLMLADVLEMRANQFASSRKGYWGVFDRRGAFFEIFCMAFRLLDHTWAERGAKRSNFGQIIGYTKSVIVELLESNPPNLPAFMGQAEE 523          
BLAST of jgi.p|Trimin1|349372 vs. uniprot
Match: A0A6H5KWK7_9PHAE (ELMO domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWK7_9PHAE)

HSP 1 Score: 156 bits (394), Expect = 2.900e-39
Identity = 99/256 (38.67%), Postives = 130/256 (50.78%), Query Frame = 1
Query:  796 WTASVNSTITSAINSRAAQDLKQAAKFGLGNARKFLSKINKGGAGGGGPSTLPPVSALATLDDLSHHLETPFNDGVRSHFELLSRLWGLLFPDAPPLAGNGGAVSPRWREAGFQADSVDGDLDHTGTLCLRCMVTLLSSADAPALLRANAARAP-PRRYPFAVVARNVTLMLADVLRLGGRGYCEARASYWGLFERADAFEQLFCWAFRRLDAVWAERNASRDAFGQXXXXXXXXXXXALGSGPETVAAFLERAAQ 1560
            W ASV +  +  +     +  + A   G G A+K  + INKG    GGP  +P   A+  L +L++ L TPF+   R H   L ++W  LFPD        G  SPRW+EAGFQ  +V  D   TG L L+ MV      D  AL    A        YP+AVVA N+TLMLADVL +    +  +R  YWG+F+R  AF ++FC AFR LD  WAER A R  FGQ            L S P  + AF+ +A +
Sbjct:  109 WKASVVNQASQGVKDFQKKTSQVAKTMGFG-AKKMWNAINKGV---GGP-VVPSEEAMENLHELANFLGTPFSATSREHVNDLGKVWMCLFPDEE----FEGVESPRWQEAGFQEPNVSLDFRGTGVLALKSMVFFCQEYDRKALSLCRAQSVGGSSHYPWAVVANNLTLMLADVLEMRANQFASSRKGYWGVFDRRGAFFEIFCMAFRLLDHTWAERGAKRSNFGQIIGYTKSVIVELLESNPPNLPAFMGQAEE 355          
BLAST of jgi.p|Trimin1|349372 vs. uniprot
Match: A0A833V3Q9_9POAL (ELMO domain-containing protein A n=1 Tax=Carex littledalei TaxID=544730 RepID=A0A833V3Q9_9POAL)

HSP 1 Score: 72.8 bits (177), Expect = 2.160e-10
Identity = 56/174 (32.18%), Postives = 79/174 (45.40%), Query Frame = 1
Query:  976 LDDLSHHLETPFNDGVRSHFELLSRLWGLLFPDA--PPLAGNGGAVSPRWREAGFQADSVDGDLDHTGTLCLRCMVTLLSS---ADAPALLRANAARAPPRRYPFAVVARNVTLMLADVLRLGGRGYCEARASYWGL---FERADAFEQLFCWAFRRLDAVWAERNASRDAFGQ 1473
            L  L   LE PF+     H + L +LW L FPD   PPL       S  W+E G+Q      D    G + L  ++    +   +    LL+    RA    YPFAV   N++ ML  +L L   G   ++A    L    E  +AF++L+C AFR +DA W  + AS   F +
Sbjct:  112 LSTLKERLEVPFDGSRVDHQDALRQLWRLAFPDTTIPPLK------SEAWKEMGWQGTDPSTDFRGGGFISLENLIYFAQNYPESFQKLLLKQEGMRAE-WEYPFAVAGINISFMLIQMLDLQSTGMPSSQAGTRFLELLAEDENAFDKLYCVAFRLMDAQWLVKRASYMEFNE 278          
BLAST of jgi.p|Trimin1|349372 vs. uniprot
Match: A0A8B8ZXU2_PHODC (LOW QUALITY PROTEIN: ELMO domain-containing protein A-like n=1 Tax=Phoenix dactylifera TaxID=42345 RepID=A0A8B8ZXU2_PHODC)

HSP 1 Score: 70.1 bits (170), Expect = 3.650e-10
Identity = 53/169 (31.36%), Postives = 76/169 (44.97%), Query Frame = 1
Query:  985 LSHHLETPFNDGVRSHFELLSRLWGLLFP--DAPPLAGNGGAVSPRWREAGFQADSVDGDLDHTGTLCLRCMVTLLSSA--DAPALLRANAARAPPRRYPFAVVARNVTLMLADVLRL-GGRGYCEARASYWGLF-ERADAFEQLFCWAFRRLDAVWAERNASRDAFGQ 1473
            L   LE PF+     H + L +LW L +P  + PPL       S  W+E G+Q      D    G + L  ++   ++       LL+    +     YPFAV   N++ ML  +L L  G    +A A +  L  E   AF+ L+C AFR LDA W  + AS   F +
Sbjct:    7 LRQRLEVPFDGSRVEHQDALKQLWRLAYPXSEIPPLK------SELWKEMGWQGSDPSTDFRGGGFISLENLIFFANNYPDSFQMLLKKQEGKRAEWEYPFAVAGINISFMLIQMLDLQSGMPTSKAGARFLELLGEDEKAFDNLYCVAFRMLDAQWLAKRASYMEFNE 169          
BLAST of jgi.p|Trimin1|349372 vs. uniprot
Match: A0A7C8ZT20_OPUST (ELMO domain-containing protein n=1 Tax=Opuntia streptacantha TaxID=393608 RepID=A0A7C8ZT20_OPUST)

HSP 1 Score: 71.2 bits (173), Expect = 7.490e-10
Identity = 52/166 (31.33%), Postives = 73/166 (43.98%), Query Frame = 1
Query:  976 LDDLSHHLETPFNDGVRSHFELLSRLWGLLFPDA--PPLAGNGGAVSPRWREAGFQADSVDGDLDHTGTLCLRCMVTLLSS--ADAPALLRANAARAPPRRYPFAVVARNVTLMLADVLRL-GGRGYCEARASYWGLFERAD-AFEQLFCWAFRRLDAVWAERNAS 1455
            L  L   L+ PF+  +  H + L +LW L +PD   PPL       S  W+E G+Q      D    G + L  ++            LL     +     YPFAV   N++ MLA +L L  GR    A   +  L    + AF+ L+C AFR +DA W  + AS
Sbjct:  120 LRKLQRRLKVPFDGSLAEHQDALKQLWRLAYPDRDIPPLK------SELWKEMGWQGSDPSTDFRGGGFISLENLIYFAEKYPESFQCLLHKQDGKRAEWEYPFAVAGINISFMLAQMLDLQSGRPRSIAGVRFLELLAEDEMAFDNLYCVAFRLMDAQWLAKRAS 279          
BLAST of jgi.p|Trimin1|349372 vs. uniprot
Match: A0A2I0BCV4_9ASPA (ELMO domain-containing protein n=1 Tax=Apostasia shenzhenica TaxID=1088818 RepID=A0A2I0BCV4_9ASPA)

HSP 1 Score: 71.2 bits (173), Expect = 1.140e-9
Identity = 54/178 (30.34%), Postives = 79/178 (44.38%), Query Frame = 1
Query:  940 PSTLPPVSALATLDDLSHHLETPFNDGVRSHFELLSRLWGLLFPD--APPLAGNGGAVSPRWREAGFQADSVDGDLDHTGTLCLRCMVTLLSSA--DAPALLRANAARAPPRRYPFAVVARNVTLMLADVLRL-GGRGYCEARASYWGLFERAD-AFEQLFCWAFRRLDAVWAERNAS 1455
            P  L P+     L +L   L+ PF+     H + L +LW L +PD   PPL       S  W+E G+Q      D    G + L  ++           +LL     +     YPFAV   N++ MLA +L L  G    +A   +  L    + AF++L+C AFR +DA W  + AS
Sbjct:  163 PGFLSPLQE-ERLQNLKQRLKVPFDGSSGDHQDALIQLWRLAYPDRETPPLK------SELWKEMGWQGSDPSTDFRGGGFISLENLIFFAKKYPDSFQSLLHKKEGKRAEWEYPFAVAGINISFMLAQMLDLQSGTPASKAGIRFLELLALDESAFDELYCVAFRMMDAQWLAKRAS 333          
BLAST of jgi.p|Trimin1|349372 vs. uniprot
Match: A0A6A4NVD0_LUPAL (Putative ELMO domain-containing protein n=1 Tax=Lupinus albus TaxID=3870 RepID=A0A6A4NVD0_LUPAL)

HSP 1 Score: 68.9 bits (167), Expect = 1.570e-9
Identity = 52/174 (29.89%), Postives = 82/174 (47.13%), Query Frame = 1
Query:  955 PVSALAT--LDDLSHHLETPFNDGVRSHFELLSRLWGLLFPDAPPLAGNGGAVSPRWREAGFQADSVDGDLDHTGTLCLRCMVTLLSSADAP---ALLRANAARAPPRRYPFAVVARNVTLMLADVLRL-GGRGYCEARASYWGLF-ERADAFEQLFCWAFRRLDAVWAERNAS 1455
            P+S L    L  L   L+ P++D    H E L+ LW   FP+        G +S +W++ G+Q  +   D    G + L  ++    +  A     +L+ +  RA    YPF+V   N++ ML  +L L  G+  C A  ++  L  E  +AF  L+C AF+ +D  W   NAS
Sbjct:   27 PLSPLEKERLQMLQERLQVPYDDTRPDHREALTALWHCSFPNV----SLSGLISDQWKDMGWQGPNPSTDFRGCGFISLENLLFFARTYPASFHRLMLKKDGHRAT-YEYPFSVAGINISFMLIQMLDLYSGKPRCIAGMNFVKLLGENEEAFNILYCIAFKMMDEQWLAMNAS 195          
BLAST of jgi.p|Trimin1|349372 vs. uniprot
Match: A0A6I9SQ49_ELAGV (ELMO domain-containing protein C n=5 Tax=Arecaceae TaxID=4710 RepID=A0A6I9SQ49_ELAGV)

HSP 1 Score: 69.7 bits (169), Expect = 2.500e-9
Identity = 54/172 (31.40%), Postives = 76/172 (44.19%), Query Frame = 1
Query:  976 LDDLSHHLETPFNDGVRSHFELLSRLWGLLFP--DAPPLAGNGGAVSPRWREAGFQADSVDGDLDHTGTLCLRCMVTLLSSADAP--ALLRANAARAPPRRYPFAVVARNVTLMLADVLRL-GGRGYCEARASYWGLFERAD-AFEQLFCWAFRRLDAVWAERNASRDAFGQ 1473
            L +L   LE PF+     H E L +LW L +P  + PPL       S  W+E G+Q      D    G + L  ++   ++       LL           YPFAV   N++ ML  +L L  G    +A A +  L    D AF+ L+C AFR +DA W  + AS   F +
Sbjct:  125 LRNLRQRLEVPFDGSRVEHQEALKQLWRLAYPNQEIPPLK------SELWKEMGWQGSDPSTDFRGGGFISLENLIFFANNYPDSFHMLLHKQEGERAEWEYPFAVAGINISFMLIQMLDLQSGIPTSKAGARFLELLGEDDKAFDNLYCVAFRMMDAQWLAKRASYMEFNE 290          
BLAST of jgi.p|Trimin1|349372 vs. uniprot
Match: A0A4Y7L0Q4_PAPSO (ELMO domain-containing protein n=4 Tax=Papaver somniferum TaxID=3469 RepID=A0A4Y7L0Q4_PAPSO)

HSP 1 Score: 69.3 bits (168), Expect = 3.270e-9
Identity = 63/225 (28.00%), Postives = 95/225 (42.22%), Query Frame = 1
Query:  823 TSAINSRAAQDLKQAAKFGLGNARKFLSKINKGGAGGGGPSTLPPVSALAT--LDDLSHHLETPFNDGVRSHFELLSRLWGLLFP--DAPPLAGNGGAVSPRWREAGFQADSVDGDLDHTGTLCLRCMVTLLSSA--DAPALLRANAARAPPRRYPFAVVARNVTLMLADVLRL-GGRGYCEARASYWGLFERAD-AFEQLFCWAFRRLDAVWAERNASRDAFGQ 1473
            TS  +   AQ  +  A   +G+    L ++   G+ G    T+  +S L    L  L   LE PF+     H + L +LW L +P  + P L       S  W+E G+Q      D    G + L  ++            LL     R     YPFAV   N++ MLA +L L  G+    +   +  L  + + AF+ L+C AFR +DA W  + AS   F +
Sbjct:   69 TSVFSQLIAQWAQWLANIVIGSG-SLLGRLISFGSNGQNKITMASLSPLQEERLKYLKQRLEIPFDGACTEHQDALKQLWRLAYPGRELPALK------SELWKEMGWQGSDPSTDFRGGGYISLENLIFFAKKYPDSFQNLLHKKEGRRAEWEYPFAVAGINISFMLAQMLDLQSGKPNSVSGRRFLELLGKDEMAFDNLYCIAFRMMDAQWLAKRASYMEFNE 286          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|349372 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YT59_9STRA0.000e+0100.00ELMO/CED-12 family-domain-containing protein n=1 T... [more]
D8LB26_ECTSI5.310e-6837.34ELMO domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5KWK7_9PHAE2.900e-3938.67ELMO domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A833V3Q9_9POAL2.160e-1032.18ELMO domain-containing protein A n=1 Tax=Carex lit... [more]
A0A8B8ZXU2_PHODC3.650e-1031.36LOW QUALITY PROTEIN: ELMO domain-containing protei... [more]
A0A7C8ZT20_OPUST7.490e-1031.33ELMO domain-containing protein n=1 Tax=Opuntia str... [more]
A0A2I0BCV4_9ASPA1.140e-930.34ELMO domain-containing protein n=1 Tax=Apostasia s... [more]
A0A6A4NVD0_LUPAL1.570e-929.89Putative ELMO domain-containing protein n=1 Tax=Lu... [more]
A0A6I9SQ49_ELAGV2.500e-931.40ELMO domain-containing protein C n=5 Tax=Arecaceae... [more]
A0A4Y7L0Q4_PAPSO3.270e-928.00ELMO domain-containing protein n=4 Tax=Papaver som... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_42contigContig_42:295249..298455 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|349372|estExt_Genemark1.C_Ctg_420039
DescriptionELMO domain-containing protein
COG categoryZ
Max annot lvl2759|Eukaryota
EggNOG OGsKOG2998@1|root,KOG2998@2759|Eukaryota
Evalue3.62e-68
Seed ortholog2880.D8LB26
Hectar predicted targeting categoryother localisation
TranscriptId349694
TrackFilteredModels1
ProteinId349372
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|349372gene_5638Tribonema minus UTEX_B_3156 geneContig_42 295249..298455 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|349372Trimin1|349372|estExt_Genemark1.C_Ctg_420039Tribonema minus UTEX_B_3156 polypeptideContig_42 295279..298455 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_5638_4exon_5638_4Tribonema minus UTEX_B_3156 exonContig_42 295249..295751 -
exon_5638_3exon_5638_3Tribonema minus UTEX_B_3156 exonContig_42 296412..296709 -
exon_5638_2exon_5638_2Tribonema minus UTEX_B_3156 exonContig_42 296907..297555 -
exon_5638_1exon_5638_1Tribonema minus UTEX_B_3156 exonContig_42 298313..298455 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_5638UTR3_5638Tribonema minus UTEX_B_3156 three_prime_UTRContig_42 295249..295278 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_5638CDS_5638Tribonema minus UTEX_B_3156 CDSContig_42 298313..298455 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_5638 ID=mRNA_5638|Name=jgi.p|Trimin1|349372|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1593bp|location=Sequence derived from alignment at Contig_42:295249..298455- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCTGCTGCACTACGTGCTGCAAGGAGAGTATGATGCCCCTGAGACAGG
CGTGGAAAGCAGCTTGGAGCTGCAGCAGGAGCAGGACCTCACTCTAGCAC
AGCTCAAGGACTTGTTTCCCTACTGTGGCACTTTCCACTTCAGGCTCAAA
GTAGCAGACAACGTGGGCACAGCGCCCCACGTATGGCTGGACCTCACCCA
GGAGGGCGATGACATTGTAGAGCTGGCGCGCAACCTGGGGGGCATCGAAC
GCGCCCCCCGCGGCAGCCACGAAGTCGTACACGTCAAGGTCCTGCCGCTG
TCGTTTGACGCGCCAGTGCTCAACGGCAGCGACGCCCTGCCCCCGGACCA
GATCTTTGACTGGAACGAAGACGTAAGTGCCGCTGCGCCGGCGGCGGCGG
CAGCGGCGCATGTGCCGGCCTATAACGTGGAGGACGCATTCGTGCGCGCC
GCCGCCGCCAGGGACGACGCGCGCGAGTTTGCAGAGCCGCCGTATCTGGG
CAGCAGCGGTGGCGGCGCGTCACGCAGCACATTGCACGCTTCAGCACAAG
GGCAGCGCCATGTCAGGCGGCCCAGTGGCGGAGGCGGTAGCGGCGGCGGC
GGCGCAGAGGGTGGGTCTGGGCACTGCCGCAGGCCTTTGGGCAGCAGCGA
GCATGCGGTGTCGCCGTTCGATTCGCCTGCGCAGCGGCGGCCGTCGCAGC
AGCAGCAGCAGCAGGCTGCGCAGCAGCAGGCGGAGAGGCGTGGCAGCGGC
GGCATGGAGTTCCAGCAGGGGGACCACGATGACAGTGCTCAGACGTGGAC
AGCGTCGGTCAACAGCACCATCACCAGCGCCATCAACAGCCGCGCCGCTC
AAGACCTCAAGCAGGCCGCCAAATTCGGCCTCGGCAACGCCAGAAAATTC
CTCAGCAAGATCAACAAGGGGGGTGCGGGGGGGGGGGGCCCGAGCACGCT
TCCCCCTGTGTCAGCGCTCGCCACTCTGGATGACCTGTCACATCACCTGG
AGACCCCCTTCAACGACGGCGTGCGCTCACACTTTGAGCTGCTGTCGCGG
TTGTGGGGGCTGCTGTTTCCGGACGCGCCGCCGCTGGCAGGCAACGGCGG
CGCGGTGTCCCCGCGCTGGCGCGAAGCGGGCTTCCAAGCCGACAGCGTCG
ACGGCGACCTGGACCACACGGGCACGCTGTGCCTGCGCTGCATGGTGACT
CTCCTCTCCAGCGCCGACGCGCCCGCGCTGCTGCGCGCCAACGCCGCGCG
CGCGCCGCCGCGCCGCTACCCCTTTGCCGTCGTCGCGCGCAACGTCACGC
TCATGCTCGCCGACGTGCTGCGGCTGGGGGGGAGGGGGTACTGCGAGGCG
CGCGCCTCCTACTGGGGCCTGTTTGAGCGCGCCGACGCGTTTGAGCAGCT
CTTCTGCTGGGCGTTCCGCAGGCTCGATGCGGTGTGGGCGGAGAGGAATG
CGTCGCGCGACGCGTTTGGCCAGGTGATCGGGCAGGTGAAGGGGGAGCTC
GAGGGGGCTCTGGGCAGCGGGCCGGAGACGGTCGCTGCTTTCCTGGAGCG
CGCTGCACAATGAGACAACGCAATGAGACAAAGTGGAGGTGGT
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protein sequence of jgi.p|Trimin1|349372

>Trimin1|349372|estExt_Genemark1.C_Ctg_420039 ID=Trimin1|349372|estExt_Genemark1.C_Ctg_420039|Name=jgi.p|Trimin1|349372|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=521bp
MLLHYVLQGEYDAPETGVESSLELQQEQDLTLAQLKDLFPYCGTFHFRLK
VADNVGTAPHVWLDLTQEGDDIVELARNLGGIERAPRGSHEVVHVKVLPL
SFDAPVLNGSDALPPDQIFDWNEDVSAAAPAAAAAAHVPAYNVEDAFVRA
AAARDDAREFAEPPYLGSSGGGASRSTLHASAQGQRHVRRPSGGGGSGGG
GAEGGSGHCRRPLGSSEHAVSPFDSPAQRRPSQQQQQQAAQQQAERRGSG
GMEFQQGDHDDSAQTWTASVNSTITSAINSRAAQDLKQAAKFGLGNARKF
LSKINKGGAGGGGPSTLPPVSALATLDDLSHHLETPFNDGVRSHFELLSR
LWGLLFPDAPPLAGNGGAVSPRWREAGFQADSVDGDLDHTGTLCLRCMVT
LLSSADAPALLRANAARAPPRRYPFAVVARNVTLMLADVLRLGGRGYCEA
RASYWGLFERADAFEQLFCWAFRRLDAVWAERNASRDAFGQVIGQVKGEL
EGALGSGPETVAAFLERAAQ*
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mRNA from alignment at Contig_42:295249..298455-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5638 ID=mRNA_5638|Name=jgi.p|Trimin1|349372|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=3207bp|location=Sequence derived from alignment at Contig_42:295249..298455- (Tribonema minus UTEX_B_3156 )
ATGCTGCTGCACTACGTGCTGCAAGGAGAGTATGATGCCCCTGAGACAGG CGTGGAAAGCAGCTTGGAGCTGCAGCAGGAGCAGGACCTCACTCTAGCAC AGCTCAAGGACTTGTTTCCCTACTGTGGCACTTTCCACTTCAGGTGCGTG CCTTTAAGTTGTCCGTATCCTGTGGTGTTGTATGTAAAATAGACGTGAGT GTGCAGCACATGAGACGAGCCGGCACCGGACACTAGTGTAGTGAGTGTTT ACAAAGTTGGGAACTCGAAGCAGAACGTCGCAGTGGGGAGCTCTGGGTTG CATCTTTTCGTGACACCAACACACAAACTAGCATCAGCAAAACATGTGTA TTGTGCACCGCCTAGAACGCCTGCAAGCAAGCATGCATCCTCAGTCAGCT TTGGCCATGGCCGGGTACTTCCGAGCTTCATGTTGCTTTTAAGGTTCCAA GTATTGCCCTGGAGTTCCTATCAACGAAGAGTTTGAACGCTGCTACCGCC TGTTCAAAATAGTGATGGCTTGGAGTATCGCTCAGGCCAGATGGGTCGAA ACAGACAGATTAGCTAATGGAGAGCTGGTGGCATCACCATGGACACATCG CACTCCAGTCTGCTAGTCTCTATTCCACTGCTGTTGGTTGGATGTCCTCT GAGCCTTTTCCCACTAGCATCGCTACAGCAGCCTACGTGCTATGCGCAGC ACCGCCTGTATTCAGCGCGCATGGTCCGGCATCATCAACCGTGGTGACAA TTCCATGCTGTATCGCGCAGCGCAAGTTGCATTATGCTCGCCGGCACCAT CCCTACCATCATCTGTAGCTTTGAACTCGCACCTAGTGGCAGATCCCAGC TGCCTGACCCCACCCCCCCCCCCCCCCCCACCGCTCTGCCGCTTGCACAG GCTCAAAGTAGCAGACAACGTGGGCACAGCGCCCCACGTATGGCTGGACC TCACCCAGGAGGGCGATGACATTGTAGAGCTGGCGCGCAACCTGGGGGGC ATCGAACGCGCCCCCCGCGGCAGCCACGAAGTCGTACACGTCAAGGTCCT GCCGCTGTCGTTTGACGCGCCAGTGCTCAACGGCAGCGACGCCCTGCCCC CGGACCAGATCTTTGACTGGAACGAAGACGTAAGTGCCGCTGCGCCGGCG GCGGCGGCAGCGGCGCATGTGCCGGCCTATAACGTGGAGGACGCATTCGT GCGCGCCGCCGCCGCCAGGGACGACGCGCGCGAGTTTGCAGAGCCGCCGT ATCTGGGCAGCAGCGGTGGCGGCGCGTCACGCAGCACATTGCACGCTTCA GCACAAGGGCAGCGCCATGTCAGGCGGCCCAGTGGCGGAGGCGGTAGCGG CGGCGGCGGCGCAGAGGGTGGGTCTGGGCACTGCCGCAGGCCTTTGGGCA GCAGCGAGCATGCGGTGTCGCCGTTCGATTCGCCTGCGCAGCGGCGGCCG TCGCAGCAGCAGCAGCAGCAGGCTGCGCAGCAGCAGGCGGAGAGGCGTGG CAGCGGCGGCATGGAGTTCCAGCAGGGGGACCACGATGACAGTGCTCAGG TCAGGCGCCCTGGGAAGGGGTGTATGCCACATGCTGCGTTGCAGTGCGAC AGGATGACAGTGCTCAGCAACAAACAACGATGTTGGCCAACCGCCATAAT CGCTGTCAACGGTCCTCACTCGCTAGCATCGGCGTCGAACGCACTGCTAC ACGTGTATTTACAAAAAAAATGCCGTTTTTGTTTGCTGTCGTGCAGACGT GGACAGCGTCGGTCAACAGCACCATCACCAGCGCCATCAACAGCCGCGCC GCTCAAGACCTCAAGCAGGCCGCCAAATTCGGCCTCGGCAACGCCAGAAA ATTCCTCAGCAAGATCAACAAGGGGGGTGCGGGGGGGGGGGGCCCGAGCA CGCTTCCCCCTGTGTCAGCGCTCGCCACTCTGGATGACCTGTCACATCAC CTGGAGACCCCCTTCAACGACGGCGTGCGCTCACACTTTGAGCTGCTGTC GCGGTTGTGGGGGCTGCTGTTTCCGGACGCGCCGCCGCTGGCAGGTGCGC GCGCCGTTTGTGTGAACTTCAAAGTTGAATTTTTTTTCCTCAACGTTGAA GGTGCCTTCAATGAGGGGTTTGCCTGATGCACAAGCGGTGGCGGTGTTCA CTGCAGTGACGGACAAGAGCGGTCAAGCGCGCCCTTTTCTCCACCGTGTC TGCTTTGCAGAAGTTGACAATAAGCGCTGTGGAAACAGAGTTTGAGTCCT ACATCTGTTAACACACAAATGATGCCAGTCTTCACGGAGTTTGAGCTCTG ATTCTCACCTGCAGTTGCAGTGCGTGCAAAGTTTTATGCTTCCATACTCT CACCGCTTTTCTGAGCTGCAACAAAAGATAGAATGGCCAACATGATTGTT CAGAAACCTCTTTTTTGTTGTCCTATAGTGGCAGAGCTTAGGACGTTCTG TCGTGAAAAGAGCGTGAATGCCACCCATGGGCCATGACCATGCGGATCTC TGCAGTTGACAGTGTGCCACTGCCTGACGTGCTAGCAAAAGCGAAACACC AAACTTTGTAACCTTAACATCACTGAGCGAAAGCTCGCCTCGGCTGCAGC GCCGCCGCTATACCACCACAACGACAAGCACTGGCTCACTTCCTACACCA ATACATCCCCCAACACACCTACCCCCAACATACCCACCCTCACCCCCCCC CCAGGCAACGGCGGCGCGGTGTCCCCGCGCTGGCGCGAAGCGGGCTTCCA AGCCGACAGCGTCGACGGCGACCTGGACCACACGGGCACGCTGTGCCTGC GCTGCATGGTGACTCTCCTCTCCAGCGCCGACGCGCCCGCGCTGCTGCGC GCCAACGCCGCGCGCGCGCCGCCGCGCCGCTACCCCTTTGCCGTCGTCGC GCGCAACGTCACGCTCATGCTCGCCGACGTGCTGCGGCTGGGGGGGAGGG GGTACTGCGAGGCGCGCGCCTCCTACTGGGGCCTGTTTGAGCGCGCCGAC GCGTTTGAGCAGCTCTTCTGCTGGGCGTTCCGCAGGCTCGATGCGGTGTG GGCGGAGAGGAATGCGTCGCGCGACGCGTTTGGCCAGGTGATCGGGCAGG TGAAGGGGGAGCTCGAGGGGGCTCTGGGCAGCGGGCCGGAGACGGTCGCT GCTTTCCTGGAGCGCGCTGCACAATGAGACAACGCAATGAGACAAAGTGG AGGTGGT
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Coding sequence (CDS) from alignment at Contig_42:295249..298455-

>mRNA_5638 ID=mRNA_5638|Name=jgi.p|Trimin1|349372|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1563bp|location=Sequence derived from alignment at Contig_42:295249..298455- (Tribonema minus UTEX_B_3156 )
ATGCTGCTGCACTACGTGCTGCAAGGAGAGTATGATGCCCCTGAGACAGG
CGTGGAAAGCAGCTTGGAGCTGCAGCAGGAGCAGGACCTCACTCTAGCAC
AGCTCAAGGACTTGTTTCCCTACTGTGGCACTTTCCACTTCAGGCTCAAA
GTAGCAGACAACGTGGGCACAGCGCCCCACGTATGGCTGGACCTCACCCA
GGAGGGCGATGACATTGTAGAGCTGGCGCGCAACCTGGGGGGCATCGAAC
GCGCCCCCCGCGGCAGCCACGAAGTCGTACACGTCAAGGTCCTGCCGCTG
TCGTTTGACGCGCCAGTGCTCAACGGCAGCGACGCCCTGCCCCCGGACCA
GATCTTTGACTGGAACGAAGACGTAAGTGCCGCTGCGCCGGCGGCGGCGG
CAGCGGCGCATGTGCCGGCCTATAACGTGGAGGACGCATTCGTGCGCGCC
GCCGCCGCCAGGGACGACGCGCGCGAGTTTGCAGAGCCGCCGTATCTGGG
CAGCAGCGGTGGCGGCGCGTCACGCAGCACATTGCACGCTTCAGCACAAG
GGCAGCGCCATGTCAGGCGGCCCAGTGGCGGAGGCGGTAGCGGCGGCGGC
GGCGCAGAGGGTGGGTCTGGGCACTGCCGCAGGCCTTTGGGCAGCAGCGA
GCATGCGGTGTCGCCGTTCGATTCGCCTGCGCAGCGGCGGCCGTCGCAGC
AGCAGCAGCAGCAGGCTGCGCAGCAGCAGGCGGAGAGGCGTGGCAGCGGC
GGCATGGAGTTCCAGCAGGGGGACCACGATGACAGTGCTCAGACGTGGAC
AGCGTCGGTCAACAGCACCATCACCAGCGCCATCAACAGCCGCGCCGCTC
AAGACCTCAAGCAGGCCGCCAAATTCGGCCTCGGCAACGCCAGAAAATTC
CTCAGCAAGATCAACAAGGGGGGTGCGGGGGGGGGGGGCCCGAGCACGCT
TCCCCCTGTGTCAGCGCTCGCCACTCTGGATGACCTGTCACATCACCTGG
AGACCCCCTTCAACGACGGCGTGCGCTCACACTTTGAGCTGCTGTCGCGG
TTGTGGGGGCTGCTGTTTCCGGACGCGCCGCCGCTGGCAGGCAACGGCGG
CGCGGTGTCCCCGCGCTGGCGCGAAGCGGGCTTCCAAGCCGACAGCGTCG
ACGGCGACCTGGACCACACGGGCACGCTGTGCCTGCGCTGCATGGTGACT
CTCCTCTCCAGCGCCGACGCGCCCGCGCTGCTGCGCGCCAACGCCGCGCG
CGCGCCGCCGCGCCGCTACCCCTTTGCCGTCGTCGCGCGCAACGTCACGC
TCATGCTCGCCGACGTGCTGCGGCTGGGGGGGAGGGGGTACTGCGAGGCG
CGCGCCTCCTACTGGGGCCTGTTTGAGCGCGCCGACGCGTTTGAGCAGCT
CTTCTGCTGGGCGTTCCGCAGGCTCGATGCGGTGTGGGCGGAGAGGAATG
CGTCGCGCGACGCGTTTGGCCAGGTGATCGGGCAGGTGAAGGGGGAGCTC
GAGGGGGCTCTGGGCAGCGGGCCGGAGACGGTCGCTGCTTTCCTGGAGCG
CGCTGCACAATGA
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