mRNA_5638 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|349372 vs. uniprot
Match: A0A835YT59_9STRA (ELMO/CED-12 family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YT59_9STRA) HSP 1 Score: 961 bits (2485), Expect = 0.000e+0 Identity = 520/520 (100.00%), Postives = 520/520 (100.00%), Query Frame = 1
Query: 1 MLLHYVLQGEYDAPETGVESSLELQQEQDLTLAQLKDLFPYCGTFHFRLKVADNVGTAPHVWLDLTQEGDDIVELARNLGGIERAPRGSHEVVHVKVLPLSFDAPVLNGSDALPPDQIFDWNEDVSAAAPAAAAAAHVPAYNVEDAFVRAAAARDDAREFAEPPYLGSSGGGASRSTLHASAQGQRHVRRPSGGXXXXXXXAEGGSGHCRRPLGSSEHAVSPFDSPAQRRPSQXXXXXXXXXXXXRRGSGGMEFQQGDHDDSAQTWTASVNSTITSAINSRAAQDLKQAAKFGLGNARKFLSKINKGGAGGGGPSTLPPVSALATLDDLSHHLETPFNDGVRSHFELLSRLWGLLFPDAPPLAGNGGAVSPRWREAGFQADSVDGDLDHTGTLCLRCMVTLLSSADAPALLRANAARAPPRRYPFAVVARNVTLMLADVLRLGGRGYCEARASYWGLFERADAFEQLFCWAFRRLDAVWAERNASRDAFGQXXXXXXXXXXXALGSGPETVAAFLERAAQ 1560
MLLHYVLQGEYDAPETGVESSLELQQEQDLTLAQLKDLFPYCGTFHFRLKVADNVGTAPHVWLDLTQEGDDIVELARNLGGIERAPRGSHEVVHVKVLPLSFDAPVLNGSDALPPDQIFDWNEDVSAAAPAAAAAAHVPAYNVEDAFVRAAAARDDAREFAEPPYLGSSGGGASRSTLHASAQGQRHVRRPSGGXXXXXXXAEGGSGHCRRPLGSSEHAVSPFDSPAQRRPSQXXXXXXXXXXXXRRGSGGMEFQQGDHDDSAQTWTASVNSTITSAINSRAAQDLKQAAKFGLGNARKFLSKINKGGAGGGGPSTLPPVSALATLDDLSHHLETPFNDGVRSHFELLSRLWGLLFPDAPPLAGNGGAVSPRWREAGFQADSVDGDLDHTGTLCLRCMVTLLSSADAPALLRANAARAPPRRYPFAVVARNVTLMLADVLRLGGRGYCEARASYWGLFERADAFEQLFCWAFRRLDAVWAERNASRDAFGQXXXXXXXXXXXALGSGPETVAAFLERAAQ
Sbjct: 1 MLLHYVLQGEYDAPETGVESSLELQQEQDLTLAQLKDLFPYCGTFHFRLKVADNVGTAPHVWLDLTQEGDDIVELARNLGGIERAPRGSHEVVHVKVLPLSFDAPVLNGSDALPPDQIFDWNEDVSAAAPAAAAAAHVPAYNVEDAFVRAAAARDDAREFAEPPYLGSSGGGASRSTLHASAQGQRHVRRPSGGXXXXXXXAEGGSGHCRRPLGSSEHAVSPFDSPAQRRPSQXXXXXXXXXXXXRRGSGGMEFQQGDHDDSAQTWTASVNSTITSAINSRAAQDLKQAAKFGLGNARKFLSKINKGGAGGGGPSTLPPVSALATLDDLSHHLETPFNDGVRSHFELLSRLWGLLFPDAPPLAGNGGAVSPRWREAGFQADSVDGDLDHTGTLCLRCMVTLLSSADAPALLRANAARAPPRRYPFAVVARNVTLMLADVLRLGGRGYCEARASYWGLFERADAFEQLFCWAFRRLDAVWAERNASRDAFGQXXXXXXXXXXXALGSGPETVAAFLERAAQ 520
BLAST of jgi.p|Trimin1|349372 vs. uniprot
Match: D8LB26_ECTSI (ELMO domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB26_ECTSI) HSP 1 Score: 237 bits (605), Expect = 5.310e-68 Identity = 202/541 (37.34%), Postives = 262/541 (48.43%), Query Frame = 1
Query: 1 MLLHYVLQGEYDAPETGVESSLELQQE---QDLTLAQLKDLFPYCGTFHFRLKVADNVGTAPHVWLDLTQEGDDIVELARNLGGIERAPRGSH--EVVHVKVLPLSFDAPVL-----NGSDALPPDQIFDWNEDVSAAAPAAAAAAHVPAYNVEDAFVRAAAARDDAREFAEPPYLGSSGGGASRSTLHASAQGQRHVRRPSG----------GXXXXXXXAEGGSGHCRRPLGSSEHAVSPFDSPAQRRPSQXXXXXXXXXXXXRRGSGGMEFQQGDHDDSAQTWTASVNSTITSAINSRAAQDLKQAAKFGLGNARKFLSKINKGGAGGGGPSTLPPVSALATLDDLSHHLETPFNDGVRSHFELLSRLWGLLFPDAPPLAGNGGAVSPRWREAGFQADSVDGDLDHTGTLCLRCMVTLLSSADAPALLRANAARAP-PRRYPFAVVARNVTLMLADVLRLGGRGYCEARASYWGLFERADAFEQLFCWAFRRLDAVWAERNASRDAFGQXXXXXXXXXXXALGSGPETVAAFLERAAQ 1560
+L+ YV+QG+ D PETGV+SS + + + LTL +L+++FP+ GTFHFRLKV D G + + W+DLT +GDDI+ELA NLGG+E G H + VH+K+LP+ F PV N P Q F E V A H P ++ R A D+ + A GGG S G R R G XXXXXXX R P+G XXXXXXXXXX + D DD TW ASV + + + + + A G G A+K + INKG GGP +P A+ L +L++ L TPF+ R H L ++W LFPD GA SPRW+EAGFQ +V D TG L L+ MV D AL A A YP+AVVA N+TLMLADVL + + +R YWG+F+R AF ++FC AFR LD WAER A R FGQ L S P + AF+ +A +
Sbjct: 5 VLVCYVIQGDDDDPETGVQSSFRVDRPTPPRTLTLFRLREMFPFEGTFHFRLKVPDANGLSDYCWVDLTTDGDDILELAENLGGLEGGNSGGHPQQRVHLKILPIDFGGPVEHEAAENAPAEAVPAQDFYAGEGVGVA--------HGPGLGLDAPGARGQATADE--DLASGVSGMDIGGGERFDVGDHSGSGTRVARERRGERSFDVDXXXXXXXXXXXXXXXXXXXRSPVGGGSRGEHGDGGRXXXXXXXYGXXXXXXXXXXXXXXXXGAYGDDDEDD---TWKASVVNQASQGVKDFQKKTSQVAKTMGFG-AKKMWNAINKGV---GGP-VVPSEEAMENLHELANFLGTPFSATSREHVNDLGKVWMCLFPDDE----FEGAESPRWQEAGFQESNVSLDFRGTGVLALKSMVFFCQEYDRKALSLCRAQSAGGSSHYPWAVVANNLTLMLADVLEMRANQFASSRKGYWGVFDRRGAFFEIFCMAFRLLDHTWAERGAKRSNFGQIIGYTKSVIVELLESNPPNLPAFMGQAEE 523
BLAST of jgi.p|Trimin1|349372 vs. uniprot
Match: A0A6H5KWK7_9PHAE (ELMO domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWK7_9PHAE) HSP 1 Score: 156 bits (394), Expect = 2.900e-39 Identity = 99/256 (38.67%), Postives = 130/256 (50.78%), Query Frame = 1
Query: 796 WTASVNSTITSAINSRAAQDLKQAAKFGLGNARKFLSKINKGGAGGGGPSTLPPVSALATLDDLSHHLETPFNDGVRSHFELLSRLWGLLFPDAPPLAGNGGAVSPRWREAGFQADSVDGDLDHTGTLCLRCMVTLLSSADAPALLRANAARAP-PRRYPFAVVARNVTLMLADVLRLGGRGYCEARASYWGLFERADAFEQLFCWAFRRLDAVWAERNASRDAFGQXXXXXXXXXXXALGSGPETVAAFLERAAQ 1560
W ASV + + + + + A G G A+K + INKG GGP +P A+ L +L++ L TPF+ R H L ++W LFPD G SPRW+EAGFQ +V D TG L L+ MV D AL A YP+AVVA N+TLMLADVL + + +R YWG+F+R AF ++FC AFR LD WAER A R FGQ L S P + AF+ +A +
Sbjct: 109 WKASVVNQASQGVKDFQKKTSQVAKTMGFG-AKKMWNAINKGV---GGP-VVPSEEAMENLHELANFLGTPFSATSREHVNDLGKVWMCLFPDEE----FEGVESPRWQEAGFQEPNVSLDFRGTGVLALKSMVFFCQEYDRKALSLCRAQSVGGSSHYPWAVVANNLTLMLADVLEMRANQFASSRKGYWGVFDRRGAFFEIFCMAFRLLDHTWAERGAKRSNFGQIIGYTKSVIVELLESNPPNLPAFMGQAEE 355
BLAST of jgi.p|Trimin1|349372 vs. uniprot
Match: A0A833V3Q9_9POAL (ELMO domain-containing protein A n=1 Tax=Carex littledalei TaxID=544730 RepID=A0A833V3Q9_9POAL) HSP 1 Score: 72.8 bits (177), Expect = 2.160e-10 Identity = 56/174 (32.18%), Postives = 79/174 (45.40%), Query Frame = 1
Query: 976 LDDLSHHLETPFNDGVRSHFELLSRLWGLLFPDA--PPLAGNGGAVSPRWREAGFQADSVDGDLDHTGTLCLRCMVTLLSS---ADAPALLRANAARAPPRRYPFAVVARNVTLMLADVLRLGGRGYCEARASYWGL---FERADAFEQLFCWAFRRLDAVWAERNASRDAFGQ 1473
L L LE PF+ H + L +LW L FPD PPL S W+E G+Q D G + L ++ + + LL+ RA YPFAV N++ ML +L L G ++A L E +AF++L+C AFR +DA W + AS F +
Sbjct: 112 LSTLKERLEVPFDGSRVDHQDALRQLWRLAFPDTTIPPLK------SEAWKEMGWQGTDPSTDFRGGGFISLENLIYFAQNYPESFQKLLLKQEGMRAE-WEYPFAVAGINISFMLIQMLDLQSTGMPSSQAGTRFLELLAEDENAFDKLYCVAFRLMDAQWLVKRASYMEFNE 278
BLAST of jgi.p|Trimin1|349372 vs. uniprot
Match: A0A8B8ZXU2_PHODC (LOW QUALITY PROTEIN: ELMO domain-containing protein A-like n=1 Tax=Phoenix dactylifera TaxID=42345 RepID=A0A8B8ZXU2_PHODC) HSP 1 Score: 70.1 bits (170), Expect = 3.650e-10 Identity = 53/169 (31.36%), Postives = 76/169 (44.97%), Query Frame = 1
Query: 985 LSHHLETPFNDGVRSHFELLSRLWGLLFP--DAPPLAGNGGAVSPRWREAGFQADSVDGDLDHTGTLCLRCMVTLLSSA--DAPALLRANAARAPPRRYPFAVVARNVTLMLADVLRL-GGRGYCEARASYWGLF-ERADAFEQLFCWAFRRLDAVWAERNASRDAFGQ 1473
L LE PF+ H + L +LW L +P + PPL S W+E G+Q D G + L ++ ++ LL+ + YPFAV N++ ML +L L G +A A + L E AF+ L+C AFR LDA W + AS F +
Sbjct: 7 LRQRLEVPFDGSRVEHQDALKQLWRLAYPXSEIPPLK------SELWKEMGWQGSDPSTDFRGGGFISLENLIFFANNYPDSFQMLLKKQEGKRAEWEYPFAVAGINISFMLIQMLDLQSGMPTSKAGARFLELLGEDEKAFDNLYCVAFRMLDAQWLAKRASYMEFNE 169
BLAST of jgi.p|Trimin1|349372 vs. uniprot
Match: A0A7C8ZT20_OPUST (ELMO domain-containing protein n=1 Tax=Opuntia streptacantha TaxID=393608 RepID=A0A7C8ZT20_OPUST) HSP 1 Score: 71.2 bits (173), Expect = 7.490e-10 Identity = 52/166 (31.33%), Postives = 73/166 (43.98%), Query Frame = 1
Query: 976 LDDLSHHLETPFNDGVRSHFELLSRLWGLLFPDA--PPLAGNGGAVSPRWREAGFQADSVDGDLDHTGTLCLRCMVTLLSS--ADAPALLRANAARAPPRRYPFAVVARNVTLMLADVLRL-GGRGYCEARASYWGLFERAD-AFEQLFCWAFRRLDAVWAERNAS 1455
L L L+ PF+ + H + L +LW L +PD PPL S W+E G+Q D G + L ++ LL + YPFAV N++ MLA +L L GR A + L + AF+ L+C AFR +DA W + AS
Sbjct: 120 LRKLQRRLKVPFDGSLAEHQDALKQLWRLAYPDRDIPPLK------SELWKEMGWQGSDPSTDFRGGGFISLENLIYFAEKYPESFQCLLHKQDGKRAEWEYPFAVAGINISFMLAQMLDLQSGRPRSIAGVRFLELLAEDEMAFDNLYCVAFRLMDAQWLAKRAS 279
BLAST of jgi.p|Trimin1|349372 vs. uniprot
Match: A0A2I0BCV4_9ASPA (ELMO domain-containing protein n=1 Tax=Apostasia shenzhenica TaxID=1088818 RepID=A0A2I0BCV4_9ASPA) HSP 1 Score: 71.2 bits (173), Expect = 1.140e-9 Identity = 54/178 (30.34%), Postives = 79/178 (44.38%), Query Frame = 1
Query: 940 PSTLPPVSALATLDDLSHHLETPFNDGVRSHFELLSRLWGLLFPD--APPLAGNGGAVSPRWREAGFQADSVDGDLDHTGTLCLRCMVTLLSSA--DAPALLRANAARAPPRRYPFAVVARNVTLMLADVLRL-GGRGYCEARASYWGLFERAD-AFEQLFCWAFRRLDAVWAERNAS 1455
P L P+ L +L L+ PF+ H + L +LW L +PD PPL S W+E G+Q D G + L ++ +LL + YPFAV N++ MLA +L L G +A + L + AF++L+C AFR +DA W + AS
Sbjct: 163 PGFLSPLQE-ERLQNLKQRLKVPFDGSSGDHQDALIQLWRLAYPDRETPPLK------SELWKEMGWQGSDPSTDFRGGGFISLENLIFFAKKYPDSFQSLLHKKEGKRAEWEYPFAVAGINISFMLAQMLDLQSGTPASKAGIRFLELLALDESAFDELYCVAFRMMDAQWLAKRAS 333
BLAST of jgi.p|Trimin1|349372 vs. uniprot
Match: A0A6A4NVD0_LUPAL (Putative ELMO domain-containing protein n=1 Tax=Lupinus albus TaxID=3870 RepID=A0A6A4NVD0_LUPAL) HSP 1 Score: 68.9 bits (167), Expect = 1.570e-9 Identity = 52/174 (29.89%), Postives = 82/174 (47.13%), Query Frame = 1
Query: 955 PVSALAT--LDDLSHHLETPFNDGVRSHFELLSRLWGLLFPDAPPLAGNGGAVSPRWREAGFQADSVDGDLDHTGTLCLRCMVTLLSSADAP---ALLRANAARAPPRRYPFAVVARNVTLMLADVLRL-GGRGYCEARASYWGLF-ERADAFEQLFCWAFRRLDAVWAERNAS 1455
P+S L L L L+ P++D H E L+ LW FP+ G +S +W++ G+Q + D G + L ++ + A +L+ + RA YPF+V N++ ML +L L G+ C A ++ L E +AF L+C AF+ +D W NAS
Sbjct: 27 PLSPLEKERLQMLQERLQVPYDDTRPDHREALTALWHCSFPNV----SLSGLISDQWKDMGWQGPNPSTDFRGCGFISLENLLFFARTYPASFHRLMLKKDGHRAT-YEYPFSVAGINISFMLIQMLDLYSGKPRCIAGMNFVKLLGENEEAFNILYCIAFKMMDEQWLAMNAS 195
BLAST of jgi.p|Trimin1|349372 vs. uniprot
Match: A0A6I9SQ49_ELAGV (ELMO domain-containing protein C n=5 Tax=Arecaceae TaxID=4710 RepID=A0A6I9SQ49_ELAGV) HSP 1 Score: 69.7 bits (169), Expect = 2.500e-9 Identity = 54/172 (31.40%), Postives = 76/172 (44.19%), Query Frame = 1
Query: 976 LDDLSHHLETPFNDGVRSHFELLSRLWGLLFP--DAPPLAGNGGAVSPRWREAGFQADSVDGDLDHTGTLCLRCMVTLLSSADAP--ALLRANAARAPPRRYPFAVVARNVTLMLADVLRL-GGRGYCEARASYWGLFERAD-AFEQLFCWAFRRLDAVWAERNASRDAFGQ 1473
L +L LE PF+ H E L +LW L +P + PPL S W+E G+Q D G + L ++ ++ LL YPFAV N++ ML +L L G +A A + L D AF+ L+C AFR +DA W + AS F +
Sbjct: 125 LRNLRQRLEVPFDGSRVEHQEALKQLWRLAYPNQEIPPLK------SELWKEMGWQGSDPSTDFRGGGFISLENLIFFANNYPDSFHMLLHKQEGERAEWEYPFAVAGINISFMLIQMLDLQSGIPTSKAGARFLELLGEDDKAFDNLYCVAFRMMDAQWLAKRASYMEFNE 290
BLAST of jgi.p|Trimin1|349372 vs. uniprot
Match: A0A4Y7L0Q4_PAPSO (ELMO domain-containing protein n=4 Tax=Papaver somniferum TaxID=3469 RepID=A0A4Y7L0Q4_PAPSO) HSP 1 Score: 69.3 bits (168), Expect = 3.270e-9 Identity = 63/225 (28.00%), Postives = 95/225 (42.22%), Query Frame = 1
Query: 823 TSAINSRAAQDLKQAAKFGLGNARKFLSKINKGGAGGGGPSTLPPVSALAT--LDDLSHHLETPFNDGVRSHFELLSRLWGLLFP--DAPPLAGNGGAVSPRWREAGFQADSVDGDLDHTGTLCLRCMVTLLSSA--DAPALLRANAARAPPRRYPFAVVARNVTLMLADVLRL-GGRGYCEARASYWGLFERAD-AFEQLFCWAFRRLDAVWAERNASRDAFGQ 1473
TS + AQ + A +G+ L ++ G+ G T+ +S L L L LE PF+ H + L +LW L +P + P L S W+E G+Q D G + L ++ LL R YPFAV N++ MLA +L L G+ + + L + + AF+ L+C AFR +DA W + AS F +
Sbjct: 69 TSVFSQLIAQWAQWLANIVIGSG-SLLGRLISFGSNGQNKITMASLSPLQEERLKYLKQRLEIPFDGACTEHQDALKQLWRLAYPGRELPALK------SELWKEMGWQGSDPSTDFRGGGYISLENLIFFAKKYPDSFQNLLHKKEGRRAEWEYPFAVAGINISFMLAQMLDLQSGKPNSVSGRRFLELLGKDEMAFDNLYCIAFRMMDAQWLAKRASYMEFNE 286 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|349372 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_5638 ID=mRNA_5638|Name=jgi.p|Trimin1|349372|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1593bp|location=Sequence derived from alignment at Contig_42:295249..298455- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGCTGCTGCACTACGTGCTGCAAGGAGAGTATGATGCCCCTGAGACAGGback to top protein sequence of jgi.p|Trimin1|349372 >Trimin1|349372|estExt_Genemark1.C_Ctg_420039 ID=Trimin1|349372|estExt_Genemark1.C_Ctg_420039|Name=jgi.p|Trimin1|349372|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=521bp MLLHYVLQGEYDAPETGVESSLELQQEQDLTLAQLKDLFPYCGTFHFRLKback to top mRNA from alignment at Contig_42:295249..298455- Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_5638 ID=mRNA_5638|Name=jgi.p|Trimin1|349372|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=3207bp|location=Sequence derived from alignment at Contig_42:295249..298455- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_42:295249..298455- >mRNA_5638 ID=mRNA_5638|Name=jgi.p|Trimin1|349372|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1563bp|location=Sequence derived from alignment at Contig_42:295249..298455- (Tribonema minus UTEX_B_3156 )back to top |