mRNA_5721 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|166257 vs. uniprot
Match: A0A836CCP1_9STRA (Pseudouridine synthase (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCP1_9STRA) HSP 1 Score: 533 bits (1372), Expect = 4.050e-191 Identity = 272/272 (100.00%), Postives = 272/272 (100.00%), Query Frame = 1
Query: 1 RINKCFKNVASRREADKFLEEGRVRVNKRTATTGARVLPGDRVTLDGKLFVYIKYWKPVGVTSTTDRGDATNVLNASGAERAYRGQRLFNVGRLDKDSSGALLLTSDGRLPGAALSAEAHQEKVYTVTVERRISDAALERMRSGVTITAPVQHSGKAVTAKTLPCQAGPCDWYSVKITLKEGRNRQIRRMCEEVGHKVKFLHRASFMGITLNGMREGEWKPLNVKEVKLINRALREAAQRDAPPAASAAGAPALLPEQNVDVTAAPSVEQRG 816
RINKCFKNVASRREADKFLEEGRVRVNKRTATTGARVLPGDRVTLDGKLFVYIKYWKPVGVTSTTDRGDATNVLNASGAERAYRGQRLFNVGRLDKDSSGALLLTSDGRLPGAALSAEAHQEKVYTVTVERRISDAALERMRSGVTITAPVQHSGKAVTAKTLPCQAGPCDWYSVKITLKEGRNRQIRRMCEEVGHKVKFLHRASFMGITLNGMREGEWKPLNVKEVKLINRALREAAQRDAPPAASAAGAPALLPEQNVDVTAAPSVEQRG
Sbjct: 1 RINKCFKNVASRREADKFLEEGRVRVNKRTATTGARVLPGDRVTLDGKLFVYIKYWKPVGVTSTTDRGDATNVLNASGAERAYRGQRLFNVGRLDKDSSGALLLTSDGRLPGAALSAEAHQEKVYTVTVERRISDAALERMRSGVTITAPVQHSGKAVTAKTLPCQAGPCDWYSVKITLKEGRNRQIRRMCEEVGHKVKFLHRASFMGITLNGMREGEWKPLNVKEVKLINRALREAAQRDAPPAASAAGAPALLPEQNVDVTAAPSVEQRG 272
BLAST of jgi.p|Trimin1|166257 vs. uniprot
Match: A0A7S0TS87_HEMAN (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0TS87_HEMAN) HSP 1 Score: 224 bits (571), Expect = 6.480e-69 Identity = 126/262 (48.09%), Postives = 163/262 (62.21%), Query Frame = 1
Query: 1 RINKCFKNVASRREADKFLEEGRVRVNKRTATTGARVLPGDRVTLDGKL------------------FVYIKYWKPVGVTSTTDRGDATNVLNASGAERAYRGQRLFNVGRLDKDSSGALLLTSDGRLPGAALSAEAHQEKVYTVTVERRISDAALERMRSGVTITAPVQHSG--KAVTAKTLPCQAGPCDWYSVKITLKEGRNRQIRRMCEEVGHKVKFLHRASFMGITLNGMREGEWKPLNVKEVKLINRALREAAQRDA 726
R+NKCFK ASRRE+D+F+ +GRV +N RTA GARV GDRVTLDGKL F Y+KY+KP GV TTD N++ +R R+F VGRLDKDS+G +LLTSDGRLP A L + +K YTV V+R I + + +GVTIT Q G K +TA T+PC+ Y ++ITL+EGRNRQIRRM + +G+ V LHR MGITL+G+REG+ + L E+ L+N+AL AA +A
Sbjct: 37 RVNKCFKEFASRRESDEFVRQGRVNINGRTAELGARVRFGDRVTLDGKLVRWEVMALTDSDFEAGEQFTYVKYYKPEGVVCTTDTRIRNNII-----DRIGHPDRIFPVGRLDKDSTGLILLTSDGRLPNAVLRSGRKHDKKYTVIVDRPIQPEDVTSLAAGVTITTTAQRDGRSKTITAPTMPCRVRQLSKYELEITLQEGRNRQIRRMLDALGYSVLELHRLEVMGITLSGLREGQCRDLTRHEMTLVNQALAAAASSEA 293
BLAST of jgi.p|Trimin1|166257 vs. uniprot
Match: A0A5J4YRA3_PORPP (23S rRNA pseudouridine n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YRA3_PORPP) HSP 1 Score: 211 bits (538), Expect = 9.360e-64 Identity = 121/267 (45.32%), Postives = 157/267 (58.80%), Query Frame = 1
Query: 1 RINKCFKNVASRREADKFLEEGRVRVNKRTATTGARVLPGDRVTLDGKL-------------------------------FVYIKYWKPVGVTSTTDRGDATNVLNASGAERAYRGQRLFNVGRLDKDSSGALLLTSDGRLPGAALSAEAHQEKVYTVTVERRISDAALERMRSGVTITAPVQHSG--KAVTAKTLPCQAGPCDWYSVKITLKEGRNRQIRRMCEEVGHKVKFLHRASFMGITLNGMREGEWKPLNVKEVKLINRAL 702
RINKCF + ASRRE+D+ + GR R+N + A GARV GD VTLDGK FVY+KYWKP G+T TTDR N+++A G +R+F VGRLDKDSSG +LLTSDGRLP + L A+ EK Y VTV+R S ++ +R GV IT Q K +TAKTLP Q + IT+ EGRNRQIR+M + +G+ V+ LHR MGI LNG+R G+W+ LN +E++++N L
Sbjct: 56 RINKCFASFASRRESDRIVSAGRARINGKVAVNGARVRSGDVVTLDGKKIDWERLVPASDWKGAARRDEQEVDQVGVSDQFVYLKYWKPRGITCTTDRRIQGNIIDAIGHR-----ERIFPVGRLDKDSSGLILLTSDGRLPNSMLRAKHKNEKTYRVTVDRPCSVNHVQHLRDGVVITTIAQRDRTVKPLTAKTLPAQVVQMAPDVLLITIVEGRNRQIRKMLDALGYTVRALHRVEIMGIGLNGLRHGQWRELNAQELEIVNNCL 317
BLAST of jgi.p|Trimin1|166257 vs. uniprot
Match: A0A7S0ZIH2_9RHOD (Hypothetical protein n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S0ZIH2_9RHOD) HSP 1 Score: 201 bits (510), Expect = 1.540e-59 Identity = 116/253 (45.85%), Postives = 149/253 (58.89%), Query Frame = 1
Query: 1 RINKCFKNVASRREADKFLEEGRVRVNKRTATTGARVLPGDRVTLDGKL----------------FVYIKYWKPVGVTSTTDRGDATNVLNASGAERAYRGQRLFNVGRLDKDSSGALLLTSDGRLPGAALSAEAHQEKVYTVTVERRISDAALERMRSGVTITAPVQHSG--KAVTAKTLPCQAGPCDWYSVKITLKEGRNRQIRRMCEEVGHKVKFLHRASFMGITLNGMR-EGEWKPLNVKEVKLINRAL 702
RINKCFK+ ASRR AD+ +EEGRV +N AT G RV GD+V LDGK F Y+K WKPVGV TTD D ++++ + G RLF VGRLD SSG +LLTSDGRLP AAL + + K Y VTV+ + + L ++R GV IT Q + +TA T PC+ +K LKEGRNRQIR+M + + LHR SFMGITL+ ++ EGEWK LN +E+ ++ L
Sbjct: 59 RINKCFKSFASRRAADRMVEEGRVHINGILATAGTRVFSGDQVQLDGKHIEWERLTVTAPAETKPFTYLKLWKPVGVVCTTDLKDKNSIMHHMRSAEIASGDRLFPVGRLDSASSGLILLTSDGRLPSAALGSRSGCTKEYLVTVDVPVCEKDLLKLRQGVVITTVAQRDRVRRPLTAMTSPCEVERIGRRQLKFVLKEGRNRQIRKMLGALNYTTLALHRNSFMGITLDPLKYEGEWKDLNKREMDIVRDCL 311
BLAST of jgi.p|Trimin1|166257 vs. uniprot
Match: C1N350_MICPC (Predicted protein (Fragment) n=1 Tax=Micromonas pusilla (strain CCMP1545) TaxID=564608 RepID=C1N350_MICPC) HSP 1 Score: 194 bits (494), Expect = 2.650e-58 Identity = 109/234 (46.58%), Postives = 142/234 (60.68%), Query Frame = 1
Query: 1 RINKCFKNVASRREADKFLEEGRVRVNKRTATTGARVLPGDRVTLDGK-----LFVYIKYWKPVGVTSTTDRGDATNVLNASGAERAYRGQRLFNVGRLDKDSSGALLLTSDGRLPGAALSAEAHQEKVYTVTVERRISDAALERMRSGVTITAPVQHS--GKAVTAKTLPCQAGPCDWYSVKITLKEGRNRQIRRMCEEVGHKVKFLHRASFMGITLNGMREGEWKPLNVKEV 681
R+NKCFK+ SRR AD+ + G V VN V PGD V L G+ Y+KYWKP GVT TTD D TN+++A Y RLF VGRLDKDS+G +LLTSDGRLP AAL + ++K Y V V+ + + +R GV I+ PVQ + +TA+TLPC+ +++ITL+EGRNRQIRRM + VG++V LHR MGI L G REG W + +E+
Sbjct: 1 RVNKCFKDFTSRRNADRLVASGAVTVNGAVXXXXXMVFPGDVVELRGERVRWETLNYVKYWKPRGVTCTTDARDRTNIVDAVN----YPDARLFPVGRLDKDSTGLILLTSDGRLPNAALRSGRKRDKKYLVVVDAVVRPEDVRMLRDGVVISTPVQRDRVDRVLTARTLPCEIDVVGARTLEITLREGRNRQIRRMLDAVGYRVINLHRTEIMGIGLRGTREGRWVECDEEEL 230
BLAST of jgi.p|Trimin1|166257 vs. uniprot
Match: A0A7R9XWT9_MICPS (Hypothetical protein n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7R9XWT9_MICPS) HSP 1 Score: 195 bits (495), Expect = 1.900e-57 Identity = 114/267 (42.70%), Postives = 149/267 (55.81%), Query Frame = 1
Query: 1 RINKCFKNVASRREADKFLEEGRVRVNKRTATTGARVLPGDRVTLDGKL----------------------------FVYIKYWKPVGVTSTTDRGDATNVLNASGAERAYRGQRLFNVGRLDKDSSGALLLTSDGRLPGAALSAEAHQEKVYTVTVERRISDAALERMRSGVTITAPVQHS--GKAVTAKTLPCQAGPCDWYSVKITLKEGRNRQIRRMCEEVGHKVKFLHRASFMGITLNGMREGEWKPLNVKEVKLINRALREA 711
R+NKCFK+ SRR AD+ + G V VN V PGD V L G+ F Y+KYWKP GVT TTD D TN+++A Y RLF VGRLDKDS+G +LLTSDGRLP AAL + ++K Y V V+ + + +R GV I+ PVQ + +TA+TLPC+ +++ITL+EGRNRQIRRM + VG++V LHR MGI L G REG W + +E+ +I R + EA
Sbjct: 36 RVNKCFKDFTSRRNADRLVASGAVTVNGAVXXXXXMVFPGDVVELRGERVRWETLNVIDESRESATSSSPAASRGSRFKYVKYWKPRGVTCTTDARDRTNIVDAVN----YPDARLFPVGRLDKDSTGLILLTSDGRLPNAALRSGRKRDKKYLVVVDAVVRPEDVRMLRDGVVISTPVQRDRVDRVLTARTLPCEIDVVGARTLEITLREGRNRQIRRMLDAVGYRVINLHRTEIMGIGLRGTREGRWVECDEEELGIIRRCIAEA 298
BLAST of jgi.p|Trimin1|166257 vs. uniprot
Match: A0A7S1I747_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1I747_9EUGL) HSP 1 Score: 196 bits (499), Expect = 1.150e-56 Identity = 117/267 (43.82%), Postives = 156/267 (58.43%), Query Frame = 1
Query: 1 RINKCFKNVASRREADKFLEEGRVRVNKRTATTGARVLPGDRVTLDG-------------------KLFVYIKYWKPVGVTSTTDRGDATNVLNASGAERAYRGQRLFNVGRLDKDSSGALLLTSDGRLPGAALSAEAHQEKVYTVTVERRISDAALERMRSGVTITAPVQHSG--KAVTAKTLPCQAG--PCD-WYSVKITLKEGRNRQIRRMCEEVGHKVKFLHRASFMGITLNGMREGEWKPLNVKEVKLINRALREAAQRDAP 729
RIN C ++ SRR+AD ++++GRV +N A G RV GD V +DG FVYIKYWKPVGVT TTD D TN++ G A RLF VGRLDKDS+G +LLT+DGR+ G+ L + + KVY VT++ S + + SGV IT +Q G + +TA TLPC+ P D ++ TL EGRNRQIRRMCE +G++V LHR F ITL G+R G+W L+ ++K++ A+ E A P
Sbjct: 152 RINSCISSL-SRRQADAYIQQGRVTINGAVAKLGDRVYAGDEVRVDGFVQRWQTLAEAKNTAPGKSNTFVYIKYWKPVGVTCTTDPKDPTNIIRMGGF--ANLPHRLFTVGRLDKDSTGLILLTNDGRVTGSMLRPKLKKPKVYEVTLDAPPSQRDVATLASGVVITTQIQRDGWVRDITAPTLPCKVRKIPGDNGRRLEFTLTEGRNRQIRRMCEALGYQVVGLHRTMFSDITLQGLRPGKWAELSADDMKVVRTAIAEDADAVGP 415
BLAST of jgi.p|Trimin1|166257 vs. uniprot
Match: L1IIQ2_GUITC (S4 domain-containing protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1IIQ2_GUITC) HSP 1 Score: 191 bits (485), Expect = 2.070e-56 Identity = 109/250 (43.60%), Postives = 146/250 (58.40%), Query Frame = 1
Query: 1 RINKCFKNVASRREADKFLEEGRVRVNKRTATTGARVLPGDRVTLDGKL------------------FVYIKYWKPVGVTSTTDRGDATNVLNASGAERAYRGQRLFNVGRLDKDSSGALLLTSDGRLPGAALSAEAHQEKVYTVTVERRISDAALERMRSGVTITAPVQHSGKA--VTAKTLPCQAGPCDWYSVKITLKEGRNRQIRRMCEEVGHKVKFLHRASFMGITLNGMREGEWKPLNVKEVKLI 690
RINKCFK ASRRE+D+F+++GRV V + V LDGKL FVYIKYWKP GV TTD N+++A G +R+F VGRLDKDS+G +LLTSDGR+P L ++ +K Y V +R I + + ++ GV IT Q K+ +TA+TLPC+ + ITL EGRNRQIR+M E +G++V LHR MGITL+G++ GEW+PL+ E+ I
Sbjct: 23 RINKCFKEFASRRESDRFVQDGRVTVXXXXXXXXXXXXXXNVVRLDGKLVQWEGLSIIDETVAPQDQFVYIKYWKPRGVVCTTDTRVRGNIVDAVGHP-----ERIFMVGRLDKDSTGLILLTSDGRVPNLVLRSDHKHDKKYMVRADRAIREEDIHKLAEGVVITTTAQRDRKSKIITARTLPCEITRVSDDEICITLHEGRNRQIRKMLEVLGYEVLELHRVEVMGITLSGLKIGEWRPLSESEMSFI 267
BLAST of jgi.p|Trimin1|166257 vs. uniprot
Match: A0A7S2S9C0_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2S9C0_9STRA) HSP 1 Score: 189 bits (480), Expect = 2.330e-54 Identity = 116/283 (40.99%), Postives = 153/283 (54.06%), Query Frame = 1
Query: 1 RINKCFKNVASRREADKFLEEGRVRVNKRTATTGARVLPG-DRVTLDGKL----------------------------FVYIKYWKPVGVTSTTDRGDATNVLN----------ASGAERAYRGQ--------RLFNVGRLDKDSSGALLLTSDGRLPGAALSAEAHQEKVYTVTVERRISDAALERMRSGVTITAPVQHSG--KAVTAKTLPCQAGPCDWYSVKITLKEGRNRQIRRMCEEVGHKVKFLHRASFMGITLNGMREGEWKPLNVKEVKLINRAL 702
R+NKCF++ SRR+AD +E GRV VN + T G RV PG D VTLDGK F YIKYWKP GVT TTD +N+++ +G+ Y+ + R+F VGRLDKDSSG + LTSDGRLP A + + K+Y V V+ R+ ++ L++ R GV IT Q G K +TAKT PC+ +ITL EGRNRQIRRMC+ +G++V+ LHR ITL + G W L+ E+ +IN L
Sbjct: 85 RLNKCFRSSHSRRQADALIEAGRVNVNGKVGTPGQRVFPGKDIVTLDGKSVNWEELNVLLPTTPVTTNSSNNSKPKSQFSYIKYWKPSGVTCTTDLSIPSNIIDELQHSPQAGTGTGSYDKYQKRSNGFNPRNRVFTVGRLDKDSSGLIFLTSDGRLPNAISRSVFKRPKIYQVKVDYRLKESDLQQWRDGVVITTVSQRDGQSKPLTAKTQPCEVQQTSHTEFEITLMEGRNRQIRRMCDVLGYRVRDLHRIEVTDITLERLTPGSWDYLSPNEMTIINNIL 367
BLAST of jgi.p|Trimin1|166257 vs. uniprot
Match: A0A061RIT5_9CHLO (23S rRNA pseudouridine2605 synthase n=3 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061RIT5_9CHLO) HSP 1 Score: 187 bits (476), Expect = 7.690e-54 Identity = 114/269 (42.38%), Postives = 149/269 (55.39%), Query Frame = 1
Query: 1 RINKCFKNVASRREADKFLEEGRVRVNKRTATTGARVLPGDR-----------------VTLDGKL-----------FVYIKYWKPVGVTSTTDRGDATNVLNASGAERAYRGQRLFNVGRLDKDSSGALLLTSDGRLPGAALSAEAHQEKVYTVTVERRISDAALERMRSGVTITAPVQHSGKAV--TAKTLPCQAGPCDWY--SVKITLKEGRNRQIRRMCEEVGHKVKFLHRASFMGITLNGMREGEWKPLNVKEVKLINRALREA 711
RINKCFK++ SRREAD+ +E+GRVRVN A TG+ + G VYIKYWKPVGV T+D NV++ R +R+F VGRLDKD+SG LLLT+DGRL A A + EK Y V ++D L R+R GV IT + G+A TAKTLPC+A +V++T++EGRNRQIRRM VGH+V LHR S M I+L+G+ G WK L+ +E+ + A+ A
Sbjct: 59 RINKCFKHLVSRREADRLIEQGRVRVNGDIAVTGSXXXXXXXXXXXXXXINWCQNSEIVASASGDFKEAWRNKKSCGLVYIKYWKPVGVVCTSDERVPNNVIS-----RIKHKERVFMVGRLDKDTSGLLLLTTDGRLVNAVCRASSGCEKTYLVRTRDPVADGELRRLREGVVITTEAKRDGRAKLRTAKTLPCEANRARGTPNAVELTIREGRNRQIRRMFAAVGHEVTGLHRTSVMSISLSGLSPGSWKELSEREIAALRSAMESA 322 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|166257 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_5721 ID=mRNA_5721|Name=jgi.p|Trimin1|166257|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=819bp|location=Sequence derived from alignment at Contig_42:883437..886431- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. CGCATAAACAAGTGCTTCAAGAACGTGGCCTCGCGGCGCGAAGCCGATAAback to top protein sequence of jgi.p|Trimin1|166257 >Trimin1|166257|e_gw1.42.11.1 ID=Trimin1|166257|e_gw1.42.11.1|Name=jgi.p|Trimin1|166257|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=273bp RINKCFKNVASRREADKFLEEGRVRVNKRTATTGARVLPGDRVTLDGKLFback to top mRNA from alignment at Contig_42:883437..886431- Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_5721 ID=mRNA_5721|Name=jgi.p|Trimin1|166257|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2995bp|location=Sequence derived from alignment at Contig_42:883437..886431- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_42:883437..886431- >mRNA_5721 ID=mRNA_5721|Name=jgi.p|Trimin1|166257|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=819bp|location=Sequence derived from alignment at Contig_42:883437..886431- (Tribonema minus UTEX_B_3156 )back to top |