mRNA_5721 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|166257
Unique NamemRNA_5721
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|166257 vs. uniprot
Match: A0A836CCP1_9STRA (Pseudouridine synthase (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCP1_9STRA)

HSP 1 Score: 533 bits (1372), Expect = 4.050e-191
Identity = 272/272 (100.00%), Postives = 272/272 (100.00%), Query Frame = 1
Query:    1 RINKCFKNVASRREADKFLEEGRVRVNKRTATTGARVLPGDRVTLDGKLFVYIKYWKPVGVTSTTDRGDATNVLNASGAERAYRGQRLFNVGRLDKDSSGALLLTSDGRLPGAALSAEAHQEKVYTVTVERRISDAALERMRSGVTITAPVQHSGKAVTAKTLPCQAGPCDWYSVKITLKEGRNRQIRRMCEEVGHKVKFLHRASFMGITLNGMREGEWKPLNVKEVKLINRALREAAQRDAPPAASAAGAPALLPEQNVDVTAAPSVEQRG 816
            RINKCFKNVASRREADKFLEEGRVRVNKRTATTGARVLPGDRVTLDGKLFVYIKYWKPVGVTSTTDRGDATNVLNASGAERAYRGQRLFNVGRLDKDSSGALLLTSDGRLPGAALSAEAHQEKVYTVTVERRISDAALERMRSGVTITAPVQHSGKAVTAKTLPCQAGPCDWYSVKITLKEGRNRQIRRMCEEVGHKVKFLHRASFMGITLNGMREGEWKPLNVKEVKLINRALREAAQRDAPPAASAAGAPALLPEQNVDVTAAPSVEQRG
Sbjct:    1 RINKCFKNVASRREADKFLEEGRVRVNKRTATTGARVLPGDRVTLDGKLFVYIKYWKPVGVTSTTDRGDATNVLNASGAERAYRGQRLFNVGRLDKDSSGALLLTSDGRLPGAALSAEAHQEKVYTVTVERRISDAALERMRSGVTITAPVQHSGKAVTAKTLPCQAGPCDWYSVKITLKEGRNRQIRRMCEEVGHKVKFLHRASFMGITLNGMREGEWKPLNVKEVKLINRALREAAQRDAPPAASAAGAPALLPEQNVDVTAAPSVEQRG 272          
BLAST of jgi.p|Trimin1|166257 vs. uniprot
Match: A0A7S0TS87_HEMAN (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0TS87_HEMAN)

HSP 1 Score: 224 bits (571), Expect = 6.480e-69
Identity = 126/262 (48.09%), Postives = 163/262 (62.21%), Query Frame = 1
Query:    1 RINKCFKNVASRREADKFLEEGRVRVNKRTATTGARVLPGDRVTLDGKL------------------FVYIKYWKPVGVTSTTDRGDATNVLNASGAERAYRGQRLFNVGRLDKDSSGALLLTSDGRLPGAALSAEAHQEKVYTVTVERRISDAALERMRSGVTITAPVQHSG--KAVTAKTLPCQAGPCDWYSVKITLKEGRNRQIRRMCEEVGHKVKFLHRASFMGITLNGMREGEWKPLNVKEVKLINRALREAAQRDA 726
            R+NKCFK  ASRRE+D+F+ +GRV +N RTA  GARV  GDRVTLDGKL                  F Y+KY+KP GV  TTD     N++     +R     R+F VGRLDKDS+G +LLTSDGRLP A L +    +K YTV V+R I    +  + +GVTIT   Q  G  K +TA T+PC+      Y ++ITL+EGRNRQIRRM + +G+ V  LHR   MGITL+G+REG+ + L   E+ L+N+AL  AA  +A
Sbjct:   37 RVNKCFKEFASRRESDEFVRQGRVNINGRTAELGARVRFGDRVTLDGKLVRWEVMALTDSDFEAGEQFTYVKYYKPEGVVCTTDTRIRNNII-----DRIGHPDRIFPVGRLDKDSTGLILLTSDGRLPNAVLRSGRKHDKKYTVIVDRPIQPEDVTSLAAGVTITTTAQRDGRSKTITAPTMPCRVRQLSKYELEITLQEGRNRQIRRMLDALGYSVLELHRLEVMGITLSGLREGQCRDLTRHEMTLVNQALAAAASSEA 293          
BLAST of jgi.p|Trimin1|166257 vs. uniprot
Match: A0A5J4YRA3_PORPP (23S rRNA pseudouridine n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YRA3_PORPP)

HSP 1 Score: 211 bits (538), Expect = 9.360e-64
Identity = 121/267 (45.32%), Postives = 157/267 (58.80%), Query Frame = 1
Query:    1 RINKCFKNVASRREADKFLEEGRVRVNKRTATTGARVLPGDRVTLDGKL-------------------------------FVYIKYWKPVGVTSTTDRGDATNVLNASGAERAYRGQRLFNVGRLDKDSSGALLLTSDGRLPGAALSAEAHQEKVYTVTVERRISDAALERMRSGVTITAPVQHSG--KAVTAKTLPCQAGPCDWYSVKITLKEGRNRQIRRMCEEVGHKVKFLHRASFMGITLNGMREGEWKPLNVKEVKLINRAL 702
            RINKCF + ASRRE+D+ +  GR R+N + A  GARV  GD VTLDGK                                FVY+KYWKP G+T TTDR    N+++A G       +R+F VGRLDKDSSG +LLTSDGRLP + L A+   EK Y VTV+R  S   ++ +R GV IT   Q     K +TAKTLP Q        + IT+ EGRNRQIR+M + +G+ V+ LHR   MGI LNG+R G+W+ LN +E++++N  L
Sbjct:   56 RINKCFASFASRRESDRIVSAGRARINGKVAVNGARVRSGDVVTLDGKKIDWERLVPASDWKGAARRDEQEVDQVGVSDQFVYLKYWKPRGITCTTDRRIQGNIIDAIGHR-----ERIFPVGRLDKDSSGLILLTSDGRLPNSMLRAKHKNEKTYRVTVDRPCSVNHVQHLRDGVVITTIAQRDRTVKPLTAKTLPAQVVQMAPDVLLITIVEGRNRQIRKMLDALGYTVRALHRVEIMGIGLNGLRHGQWRELNAQELEIVNNCL 317          
BLAST of jgi.p|Trimin1|166257 vs. uniprot
Match: A0A7S0ZIH2_9RHOD (Hypothetical protein n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S0ZIH2_9RHOD)

HSP 1 Score: 201 bits (510), Expect = 1.540e-59
Identity = 116/253 (45.85%), Postives = 149/253 (58.89%), Query Frame = 1
Query:    1 RINKCFKNVASRREADKFLEEGRVRVNKRTATTGARVLPGDRVTLDGKL----------------FVYIKYWKPVGVTSTTDRGDATNVLNASGAERAYRGQRLFNVGRLDKDSSGALLLTSDGRLPGAALSAEAHQEKVYTVTVERRISDAALERMRSGVTITAPVQHSG--KAVTAKTLPCQAGPCDWYSVKITLKEGRNRQIRRMCEEVGHKVKFLHRASFMGITLNGMR-EGEWKPLNVKEVKLINRAL 702
            RINKCFK+ ASRR AD+ +EEGRV +N   AT G RV  GD+V LDGK                 F Y+K WKPVGV  TTD  D  ++++   +     G RLF VGRLD  SSG +LLTSDGRLP AAL + +   K Y VTV+  + +  L ++R GV IT   Q     + +TA T PC+        +K  LKEGRNRQIR+M   + +    LHR SFMGITL+ ++ EGEWK LN +E+ ++   L
Sbjct:   59 RINKCFKSFASRRAADRMVEEGRVHINGILATAGTRVFSGDQVQLDGKHIEWERLTVTAPAETKPFTYLKLWKPVGVVCTTDLKDKNSIMHHMRSAEIASGDRLFPVGRLDSASSGLILLTSDGRLPSAALGSRSGCTKEYLVTVDVPVCEKDLLKLRQGVVITTVAQRDRVRRPLTAMTSPCEVERIGRRQLKFVLKEGRNRQIRKMLGALNYTTLALHRNSFMGITLDPLKYEGEWKDLNKREMDIVRDCL 311          
BLAST of jgi.p|Trimin1|166257 vs. uniprot
Match: C1N350_MICPC (Predicted protein (Fragment) n=1 Tax=Micromonas pusilla (strain CCMP1545) TaxID=564608 RepID=C1N350_MICPC)

HSP 1 Score: 194 bits (494), Expect = 2.650e-58
Identity = 109/234 (46.58%), Postives = 142/234 (60.68%), Query Frame = 1
Query:    1 RINKCFKNVASRREADKFLEEGRVRVNKRTATTGARVLPGDRVTLDGK-----LFVYIKYWKPVGVTSTTDRGDATNVLNASGAERAYRGQRLFNVGRLDKDSSGALLLTSDGRLPGAALSAEAHQEKVYTVTVERRISDAALERMRSGVTITAPVQHS--GKAVTAKTLPCQAGPCDWYSVKITLKEGRNRQIRRMCEEVGHKVKFLHRASFMGITLNGMREGEWKPLNVKEV 681
            R+NKCFK+  SRR AD+ +  G V VN         V PGD V L G+        Y+KYWKP GVT TTD  D TN+++A      Y   RLF VGRLDKDS+G +LLTSDGRLP AAL +   ++K Y V V+  +    +  +R GV I+ PVQ     + +TA+TLPC+       +++ITL+EGRNRQIRRM + VG++V  LHR   MGI L G REG W   + +E+
Sbjct:    1 RVNKCFKDFTSRRNADRLVASGAVTVNGAVXXXXXMVFPGDVVELRGERVRWETLNYVKYWKPRGVTCTTDARDRTNIVDAVN----YPDARLFPVGRLDKDSTGLILLTSDGRLPNAALRSGRKRDKKYLVVVDAVVRPEDVRMLRDGVVISTPVQRDRVDRVLTARTLPCEIDVVGARTLEITLREGRNRQIRRMLDAVGYRVINLHRTEIMGIGLRGTREGRWVECDEEEL 230          
BLAST of jgi.p|Trimin1|166257 vs. uniprot
Match: A0A7R9XWT9_MICPS (Hypothetical protein n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7R9XWT9_MICPS)

HSP 1 Score: 195 bits (495), Expect = 1.900e-57
Identity = 114/267 (42.70%), Postives = 149/267 (55.81%), Query Frame = 1
Query:    1 RINKCFKNVASRREADKFLEEGRVRVNKRTATTGARVLPGDRVTLDGKL----------------------------FVYIKYWKPVGVTSTTDRGDATNVLNASGAERAYRGQRLFNVGRLDKDSSGALLLTSDGRLPGAALSAEAHQEKVYTVTVERRISDAALERMRSGVTITAPVQHS--GKAVTAKTLPCQAGPCDWYSVKITLKEGRNRQIRRMCEEVGHKVKFLHRASFMGITLNGMREGEWKPLNVKEVKLINRALREA 711
            R+NKCFK+  SRR AD+ +  G V VN         V PGD V L G+                             F Y+KYWKP GVT TTD  D TN+++A      Y   RLF VGRLDKDS+G +LLTSDGRLP AAL +   ++K Y V V+  +    +  +R GV I+ PVQ     + +TA+TLPC+       +++ITL+EGRNRQIRRM + VG++V  LHR   MGI L G REG W   + +E+ +I R + EA
Sbjct:   36 RVNKCFKDFTSRRNADRLVASGAVTVNGAVXXXXXMVFPGDVVELRGERVRWETLNVIDESRESATSSSPAASRGSRFKYVKYWKPRGVTCTTDARDRTNIVDAVN----YPDARLFPVGRLDKDSTGLILLTSDGRLPNAALRSGRKRDKKYLVVVDAVVRPEDVRMLRDGVVISTPVQRDRVDRVLTARTLPCEIDVVGARTLEITLREGRNRQIRRMLDAVGYRVINLHRTEIMGIGLRGTREGRWVECDEEELGIIRRCIAEA 298          
BLAST of jgi.p|Trimin1|166257 vs. uniprot
Match: A0A7S1I747_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1I747_9EUGL)

HSP 1 Score: 196 bits (499), Expect = 1.150e-56
Identity = 117/267 (43.82%), Postives = 156/267 (58.43%), Query Frame = 1
Query:    1 RINKCFKNVASRREADKFLEEGRVRVNKRTATTGARVLPGDRVTLDG-------------------KLFVYIKYWKPVGVTSTTDRGDATNVLNASGAERAYRGQRLFNVGRLDKDSSGALLLTSDGRLPGAALSAEAHQEKVYTVTVERRISDAALERMRSGVTITAPVQHSG--KAVTAKTLPCQAG--PCD-WYSVKITLKEGRNRQIRRMCEEVGHKVKFLHRASFMGITLNGMREGEWKPLNVKEVKLINRALREAAQRDAP 729
            RIN C  ++ SRR+AD ++++GRV +N   A  G RV  GD V +DG                     FVYIKYWKPVGVT TTD  D TN++   G   A    RLF VGRLDKDS+G +LLT+DGR+ G+ L  +  + KVY VT++   S   +  + SGV IT  +Q  G  + +TA TLPC+    P D    ++ TL EGRNRQIRRMCE +G++V  LHR  F  ITL G+R G+W  L+  ++K++  A+ E A    P
Sbjct:  152 RINSCISSL-SRRQADAYIQQGRVTINGAVAKLGDRVYAGDEVRVDGFVQRWQTLAEAKNTAPGKSNTFVYIKYWKPVGVTCTTDPKDPTNIIRMGGF--ANLPHRLFTVGRLDKDSTGLILLTNDGRVTGSMLRPKLKKPKVYEVTLDAPPSQRDVATLASGVVITTQIQRDGWVRDITAPTLPCKVRKIPGDNGRRLEFTLTEGRNRQIRRMCEALGYQVVGLHRTMFSDITLQGLRPGKWAELSADDMKVVRTAIAEDADAVGP 415          
BLAST of jgi.p|Trimin1|166257 vs. uniprot
Match: L1IIQ2_GUITC (S4 domain-containing protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1IIQ2_GUITC)

HSP 1 Score: 191 bits (485), Expect = 2.070e-56
Identity = 109/250 (43.60%), Postives = 146/250 (58.40%), Query Frame = 1
Query:    1 RINKCFKNVASRREADKFLEEGRVRVNKRTATTGARVLPGDRVTLDGKL------------------FVYIKYWKPVGVTSTTDRGDATNVLNASGAERAYRGQRLFNVGRLDKDSSGALLLTSDGRLPGAALSAEAHQEKVYTVTVERRISDAALERMRSGVTITAPVQHSGKA--VTAKTLPCQAGPCDWYSVKITLKEGRNRQIRRMCEEVGHKVKFLHRASFMGITLNGMREGEWKPLNVKEVKLI 690
            RINKCFK  ASRRE+D+F+++GRV V              + V LDGKL                  FVYIKYWKP GV  TTD     N+++A G       +R+F VGRLDKDS+G +LLTSDGR+P   L ++   +K Y V  +R I +  + ++  GV IT   Q   K+  +TA+TLPC+        + ITL EGRNRQIR+M E +G++V  LHR   MGITL+G++ GEW+PL+  E+  I
Sbjct:   23 RINKCFKEFASRRESDRFVQDGRVTVXXXXXXXXXXXXXXNVVRLDGKLVQWEGLSIIDETVAPQDQFVYIKYWKPRGVVCTTDTRVRGNIVDAVGHP-----ERIFMVGRLDKDSTGLILLTSDGRVPNLVLRSDHKHDKKYMVRADRAIREEDIHKLAEGVVITTTAQRDRKSKIITARTLPCEITRVSDDEICITLHEGRNRQIRKMLEVLGYEVLELHRVEVMGITLSGLKIGEWRPLSESEMSFI 267          
BLAST of jgi.p|Trimin1|166257 vs. uniprot
Match: A0A7S2S9C0_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2S9C0_9STRA)

HSP 1 Score: 189 bits (480), Expect = 2.330e-54
Identity = 116/283 (40.99%), Postives = 153/283 (54.06%), Query Frame = 1
Query:    1 RINKCFKNVASRREADKFLEEGRVRVNKRTATTGARVLPG-DRVTLDGKL----------------------------FVYIKYWKPVGVTSTTDRGDATNVLN----------ASGAERAYRGQ--------RLFNVGRLDKDSSGALLLTSDGRLPGAALSAEAHQEKVYTVTVERRISDAALERMRSGVTITAPVQHSG--KAVTAKTLPCQAGPCDWYSVKITLKEGRNRQIRRMCEEVGHKVKFLHRASFMGITLNGMREGEWKPLNVKEVKLINRAL 702
            R+NKCF++  SRR+AD  +E GRV VN +  T G RV PG D VTLDGK                             F YIKYWKP GVT TTD    +N+++           +G+   Y+ +        R+F VGRLDKDSSG + LTSDGRLP A   +   + K+Y V V+ R+ ++ L++ R GV IT   Q  G  K +TAKT PC+         +ITL EGRNRQIRRMC+ +G++V+ LHR     ITL  +  G W  L+  E+ +IN  L
Sbjct:   85 RLNKCFRSSHSRRQADALIEAGRVNVNGKVGTPGQRVFPGKDIVTLDGKSVNWEELNVLLPTTPVTTNSSNNSKPKSQFSYIKYWKPSGVTCTTDLSIPSNIIDELQHSPQAGTGTGSYDKYQKRSNGFNPRNRVFTVGRLDKDSSGLIFLTSDGRLPNAISRSVFKRPKIYQVKVDYRLKESDLQQWRDGVVITTVSQRDGQSKPLTAKTQPCEVQQTSHTEFEITLMEGRNRQIRRMCDVLGYRVRDLHRIEVTDITLERLTPGSWDYLSPNEMTIINNIL 367          
BLAST of jgi.p|Trimin1|166257 vs. uniprot
Match: A0A061RIT5_9CHLO (23S rRNA pseudouridine2605 synthase n=3 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061RIT5_9CHLO)

HSP 1 Score: 187 bits (476), Expect = 7.690e-54
Identity = 114/269 (42.38%), Postives = 149/269 (55.39%), Query Frame = 1
Query:    1 RINKCFKNVASRREADKFLEEGRVRVNKRTATTGARVLPGDR-----------------VTLDGKL-----------FVYIKYWKPVGVTSTTDRGDATNVLNASGAERAYRGQRLFNVGRLDKDSSGALLLTSDGRLPGAALSAEAHQEKVYTVTVERRISDAALERMRSGVTITAPVQHSGKAV--TAKTLPCQAGPCDWY--SVKITLKEGRNRQIRRMCEEVGHKVKFLHRASFMGITLNGMREGEWKPLNVKEVKLINRALREA 711
            RINKCFK++ SRREAD+ +E+GRVRVN   A TG+                         +  G              VYIKYWKPVGV  T+D     NV++     R    +R+F VGRLDKD+SG LLLT+DGRL  A   A +  EK Y V     ++D  L R+R GV IT   +  G+A   TAKTLPC+A        +V++T++EGRNRQIRRM   VGH+V  LHR S M I+L+G+  G WK L+ +E+  +  A+  A
Sbjct:   59 RINKCFKHLVSRREADRLIEQGRVRVNGDIAVTGSXXXXXXXXXXXXXXINWCQNSEIVASASGDFKEAWRNKKSCGLVYIKYWKPVGVVCTSDERVPNNVIS-----RIKHKERVFMVGRLDKDTSGLLLLTTDGRLVNAVCRASSGCEKTYLVRTRDPVADGELRRLREGVVITTEAKRDGRAKLRTAKTLPCEANRARGTPNAVELTIREGRNRQIRRMFAAVGHEVTGLHRTSVMSISLSGLSPGSWKELSEREIAALRSAMESA 322          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|166257 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CCP1_9STRA4.050e-191100.00Pseudouridine synthase (Fragment) n=1 Tax=Tribonem... [more]
A0A7S0TS87_HEMAN6.480e-6948.09Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
A0A5J4YRA3_PORPP9.360e-6445.3223S rRNA pseudouridine n=1 Tax=Porphyridium purpur... [more]
A0A7S0ZIH2_9RHOD1.540e-5945.85Hypothetical protein n=1 Tax=Timspurckia oligopyre... [more]
C1N350_MICPC2.650e-5846.58Predicted protein (Fragment) n=1 Tax=Micromonas pu... [more]
A0A7R9XWT9_MICPS1.900e-5742.70Hypothetical protein n=1 Tax=Micromonas pusilla Ta... [more]
A0A7S1I747_9EUGL1.150e-5643.82Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]
L1IIQ2_GUITC2.070e-5643.60S4 domain-containing protein n=1 Tax=Guillardia th... [more]
A0A7S2S9C0_9STRA2.330e-5440.99Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
A0A061RIT5_9CHLO7.690e-5442.3823S rRNA pseudouridine2605 synthase n=3 Tax=Tetras... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_42contigContig_42:883437..886431 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|166257|e_gw1.42.11.1
BRITEko00000,ko01000,ko03009
KEGG koko:K06182
EC5.4.99.21
DescriptionRNA pseudouridylate synthase
COG categoryJ
Max annot lvl2759|Eukaryota
EggNOG OGsCOG1187@1|root,2S02U@2759|Eukaryota
Evalue4.35e-59
Seed ortholog38833.XP_003062548.1
Hectar predicted targeting categoryother localisation
TranscriptId166579
TrackFilteredModels1
ProteinId166257
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|166257gene_5721Tribonema minus UTEX_B_3156 geneContig_42 883437..886431 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|166257Trimin1|166257|e_gw1.42.11.1Tribonema minus UTEX_B_3156 polypeptideContig_42 883437..886431 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_5721_6exon_5721_6Tribonema minus UTEX_B_3156 exonContig_42 883437..883625 -
exon_5721_5exon_5721_5Tribonema minus UTEX_B_3156 exonContig_42 883905..884006 -
exon_5721_4exon_5721_4Tribonema minus UTEX_B_3156 exonContig_42 884467..884480 -
exon_5721_3exon_5721_3Tribonema minus UTEX_B_3156 exonContig_42 884621..884765 -
exon_5721_2exon_5721_2Tribonema minus UTEX_B_3156 exonContig_42 885437..885658 -
exon_5721_1exon_5721_1Tribonema minus UTEX_B_3156 exonContig_42 886285..886431 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_5721CDS_5721Tribonema minus UTEX_B_3156 CDSContig_42 886285..886431 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_5721 ID=mRNA_5721|Name=jgi.p|Trimin1|166257|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=819bp|location=Sequence derived from alignment at Contig_42:883437..886431- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CGCATAAACAAGTGCTTCAAGAACGTGGCCTCGCGGCGCGAAGCCGATAA
ATTCTTGGAGGAGGGCAGGGTGCGTGTCAACAAGAGGACGGCCACAACTG
GCGCGCGCGTCCTTCCCGGCGATCGGGTGACCCTGGACGGAAAGCTCTTC
GTCTACATCAAGTACTGGAAGCCGGTGGGGGTCACGAGCACGACGGACCG
CGGCGACGCGACCAATGTGCTCAACGCGAGCGGCGCGGAGCGCGCGTACC
GCGGGCAGCGGCTGTTCAACGTGGGGCGCCTGGACAAGGACAGCAGCGGC
GCGCTGCTGCTGACAAGCGACGGGCGGCTGCCGGGGGCGGCGCTCAGCGC
GGAGGCGCACCAGGAGAAGGTGTACACTGTAACGGTGGAGCGGCGCATCT
CCGACGCGGCGCTGGAGCGCATGCGCAGCGGCGTCACCATCACCGCGCCG
GTGCAGCACAGCGGCAAGGCGGTCACGGCCAAGACGCTGCCCTGCCAGGC
AGGGCCCTGCGACTGGTACAGCGTCAAAATCACGTTGAAGGAGGGGCGCA
ACCGCCAGATCCGCCGCATGTGCGAGGAGGTGGGGCACAAGGTGAAGTTC
CTCCACCGCGCGTCGTTCATGGGGATCACGCTCAACGGCATGCGTGAAGG
CGAGTGGAAGCCGCTAAACGTCAAGGAGGTCAAGCTCATCAACAGGGCGC
TGCGGGAGGCGGCGCAGCGCGATGCGCCGCCGGCAGCCAGTGCCGCCGGT
GCGCCAGCGCTGCTGCCTGAGCAGAATGTGGACGTCACAGCGGCTCCATC
TGTGGAGCAGCGCGGGTGA
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protein sequence of jgi.p|Trimin1|166257

>Trimin1|166257|e_gw1.42.11.1 ID=Trimin1|166257|e_gw1.42.11.1|Name=jgi.p|Trimin1|166257|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=273bp
RINKCFKNVASRREADKFLEEGRVRVNKRTATTGARVLPGDRVTLDGKLF
VYIKYWKPVGVTSTTDRGDATNVLNASGAERAYRGQRLFNVGRLDKDSSG
ALLLTSDGRLPGAALSAEAHQEKVYTVTVERRISDAALERMRSGVTITAP
VQHSGKAVTAKTLPCQAGPCDWYSVKITLKEGRNRQIRRMCEEVGHKVKF
LHRASFMGITLNGMREGEWKPLNVKEVKLINRALREAAQRDAPPAASAAG
APALLPEQNVDVTAAPSVEQRG*
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mRNA from alignment at Contig_42:883437..886431-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5721 ID=mRNA_5721|Name=jgi.p|Trimin1|166257|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2995bp|location=Sequence derived from alignment at Contig_42:883437..886431- (Tribonema minus UTEX_B_3156 )
CGCATAAACAAGTGCTTCAAGAACGTGGCCTCGCGGCGCGAAGCCGATAA ATTCTTGGAGGAGGGCAGGGTGCGTGTCAACAAGAGGACGGCCACAACTG GCGCGCGCGTCCTTCCCGGCGATCGGGTGACCCTGGACGGAAAGCTCGTG CGCTGGGAGGCCATACCGGGGCTGCTGGCGGAGGCACGCGCTGCTGCTGC GGGGGCTGCCGGCCGCGCTGCTGCTGGGGGGTCGTACAAGGGGGGGGCTG TGGCAAGTGAGTGCGCACGCAGGGTTCTTCGCCACGACGAGGCATGGATT ATGTCATGCGTGGCACCACCTGCATGGATTCTGTCTTGTACTGGCACCAC CTGCAAGTGTCATTGTGGGCAAGACATGGAGTGTGTCATGCGGCTGCGCC GTCCACGCCCCGTTCTGCCCGTGATTGCGCATGCACCAGTTTGATTTGAT GGCGCAGCGCAGTGCTGCATGGGCAGAGGGGCACTCTCGTGCATTTTCTG TACGGGTGATCTCACGAATGAGGCATTGGCCAAAGCTTGACATGCTGGCC GGTACCGCTGAATTGGCACACCATTCAGTCAGGCACGTGTCAGCGCTCAA CAACGCCCTGCCCTTCCGACGCTCGACCGCTGCATTCTCCGCCGGTTGCC ATACCATCACGCCCACCTCATTACGTGGCGTGCTCTGCTCTTTGACTTCG CGCTCGTCCCGGCGCAGGCACCACCGCTGCTGCTGCTGGTGTCACCGCAA CAGCAACGGCGGCGGCGCAGGAGTTCGTCTACATCAAGTACTGGAAGCCG GTGGGGGTCACGAGCACGACGGACCGCGGCGACGCGACCAATGTGCTCAA CGCGAGCGGCGCGGAGCGCGCGTACCGCGGGCAGCGGCTGTTCAACGTGG GGCGCCTGGACAAGGACAGCAGCGGCGCGCTGCTGCTGACAAGCGACGGG CGGCTGCCGGGGGCGGCGCTCAGCGCGGAGGCGCACCAGGAGAAGGTATG TAGGTATGCATGCGCATGCGGAGGAGCTCGCTGCGCGAGGCTGTCTTGAC CGGGGGAACGCTCCAGGAAACACCAGTAGAAGGGCATCAGAAGAAGGGGA CAGCTGGTGACAACACTTCTGTTCCAACGTGTGGTGTTCCCGACCACACG AGCCGTGCAGCGCCCATTCAGCGCAGCCATCACTGCACGAGGCTTTTTGT AGCGCGTTGTGCTGAAACCAAGCAGCAGGCGCGTGCAGTCATACCTATAT GCGCATACCCCCCCCCAAAGCCTGCACTGCTGCCCTTTGATAATGCGTAC GACACAAGCCTGCACATTGGAATGGTGAAAACTTATTCCACCTTCCTGGC GGGCAAATGATGTCGCCAATGTTGTCTGCGCAGCATTTGCATAAAAGTGC AGTTTACATTATACTCATCCGCCTGACTCAGATGTGACGCCACTAGACTG ACAGCAGCAGTACGCCGGGCACGCTCTGTACTATGCGAAGACAGAGCAAT GCGCTCTGCGAGGCTGCGCACAGCCACATCGCCCGGCCTGATGCCTCAGT GCACTGCATTGACACCAGCACGTACCGCTGTGTTTTCCCAGAACAGGTCT GCATTCTGCACACAGGTGTACACGGCGAACTTCCCCTGAACTTGCCCGAA CTCCCCGTGTGTACAGGTGTACACTGTAACGGTGGAGCGGCGCATCTCCG ACGCGGCGCTGGAGCGCATGCGCAGCGGCGTCACCATCACCGCGCCGGTG CAGCACAGCGGCAAGGCGGTCACGGCCAAGACGCTGCCCTGCCAGGCAGG GCCCTGCGACTGTTGCCATTGAACCTCCACTTTGAAGTGGTGGTTATGCT AAATTCATTCACTGCTGCAGGAAGGGCGACGATGCGGCACACCAACGAGG TGATGCGGTGACAGCCAAGTCCAAGGCAGGGCCTATGAAATGCCATTGAA GGGTACAGCGTCAAAGTACAAGACATGCTGTATACAATTGTTGCGCCTGT GCAGCACAGCAGCAAGGAGCAAAGGCCAAGATGCTGCCTTGCAAGGCGCG GCTTGCAAGCTGCCATCATACCCCGAACCTATGCCACCTACCTACGCCTC ACTCATGAGGCAAAACACGTCCGACAACAATGTGGTCTTTTGCCTGGCAG TTACGGTAACTGCTGCACGCAGCGCTCAGCTCATGTGTTTTGCACAGGCC CGCGCCATAATGAGCCACCATGCCACTACAACGCAGCGCATCATCGGTGT GTTGCGCGCACATGAATTCATGCATGCCCCCTCTCGCAATGCACATTCGC GCGGCGCTGTGACGCAGTTGTGCGCTTATTAATTCATGAGTTTGAAATGT CCCTCTCGCAATGCACATTTGCGCTACGCCGTGATGCAGGTGCGACGTGT GGGCACCGATGGCCGCGTCTTTGAGATCACGTTGAAGGAGGGGCGCAACC GCCAGATCCGCCGCATGTGCGAGGAGGTGGGGCACAAGGTGAAGTTCCTC CACCGCGCGTCGTTCATGGGGATCACGGTGAGTCTTGACTTGACTCGGTG GATGGCATGCTTGCTGGTTCATGTTGTGAGACTCACTGTGGCCGGCATTG CAGCAATTTTCTGGTGGAGGAAATGACGCGGAAATGACGACAACTGCACC CCAGGAAGACCTCTGACGCGCACCAGTGCCGCCACAGCGCTTGCTGCTGT GGATGTCTCACGAGCCTCCGCCGCCGCTGCCGCGCGCTTTGCGCGACGAT GACGACTCATGAATTCGACTCACGCCCCTCTGCCTTGCCCTGCTTTGCTG CCACAGCTCAACGGCATGCGTGAAGGCGAGTGGAAGCCGCTAAACGTCAA GGAGGTCAAGCTCATCAACAGGGCGCTGCGGGAGGCGGCGCAGCGCGATG CGCCGCCGGCAGCCAGTGCCGCCGGTGCGCCAGCGCTGCTGCCTGAGCAG AATGTGGACGTCACAGCGGCTCCATCTGTGGAGCAGCGCGGGTGA
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Coding sequence (CDS) from alignment at Contig_42:883437..886431-

>mRNA_5721 ID=mRNA_5721|Name=jgi.p|Trimin1|166257|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=819bp|location=Sequence derived from alignment at Contig_42:883437..886431- (Tribonema minus UTEX_B_3156 )
CGCATAAACAAGTGCTTCAAGAACGTGGCCTCGCGGCGCGAAGCCGATAA
ATTCTTGGAGGAGGGCAGGGTGCGTGTCAACAAGAGGACGGCCACAACTG
GCGCGCGCGTCCTTCCCGGCGATCGGGTGACCCTGGACGGAAAGCTCTTC
GTCTACATCAAGTACTGGAAGCCGGTGGGGGTCACGAGCACGACGGACCG
CGGCGACGCGACCAATGTGCTCAACGCGAGCGGCGCGGAGCGCGCGTACC
GCGGGCAGCGGCTGTTCAACGTGGGGCGCCTGGACAAGGACAGCAGCGGC
GCGCTGCTGCTGACAAGCGACGGGCGGCTGCCGGGGGCGGCGCTCAGCGC
GGAGGCGCACCAGGAGAAGGTGTACACTGTAACGGTGGAGCGGCGCATCT
CCGACGCGGCGCTGGAGCGCATGCGCAGCGGCGTCACCATCACCGCGCCG
GTGCAGCACAGCGGCAAGGCGGTCACGGCCAAGACGCTGCCCTGCCAGGC
AGGGCCCTGCGACTGGTACAGCGTCAAAATCACGTTGAAGGAGGGGCGCA
ACCGCCAGATCCGCCGCATGTGCGAGGAGGTGGGGCACAAGGTGAAGTTC
CTCCACCGCGCGTCGTTCATGGGGATCACGCTCAACGGCATGCGTGAAGG
CGAGTGGAAGCCGCTAAACGTCAAGGAGGTCAAGCTCATCAACAGGGCGC
TGCGGGAGGCGGCGCAGCGCGATGCGCCGCCGGCAGCCAGTGCCGCCGGT
GCGCCAGCGCTGCTGCCTGAGCAGAATGTGGACGTCACAGCGGCTCCATC
TGTGGAGCAGCGCGGGTGA
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