mRNA_4398 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|143180 vs. uniprot
Match: A0A835YTE2_9STRA (USP domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTE2_9STRA) HSP 1 Score: 412 bits (1060), Expect = 3.820e-145 Identity = 225/225 (100.00%), Postives = 225/225 (100.00%), Query Frame = 1
Query: 1 SNYDEVHELVLSRLSGPQYHRGLLGLTNMGNTCFMNTALQCLSNCVPLTDYFLAYDFRKEINASNRRGHGGAVAEAYGQLVNTLWGLGGEDGGSAGXXXGAPAVAAVTTLTPSDFKAAIDRVIPHFQGFQQHDVHEYLAFLLDAIHEDLNRVVVTSAXXXXXXXXXXXXXXXXAAAREAWRGYLLRNKSIVVDLFQGQLRSALTCDECGHVSVTFDPFMYLSVPV 675
SNYDEVHELVLSRLSGPQYHRGLLGLTNMGNTCFMNTALQCLSNCVPLTDYFLAYDFRKEINASNRRGHGGAVAEAYGQLVNTLWGLGGEDGGSAGXXXGAPAVAAVTTLTPSDFKAAIDRVIPHFQGFQQHDVHEYLAFLLDAIHEDLNRVVVTSAXXXXXXXXXXXXXXXXAAAREAWRGYLLRNKSIVVDLFQGQLRSALTCDECGHVSVTFDPFMYLSVPV
Sbjct: 1 SNYDEVHELVLSRLSGPQYHRGLLGLTNMGNTCFMNTALQCLSNCVPLTDYFLAYDFRKEINASNRRGHGGAVAEAYGQLVNTLWGLGGEDGGSAGXXXGAPAVAAVTTLTPSDFKAAIDRVIPHFQGFQQHDVHEYLAFLLDAIHEDLNRVVVTSAXXXXXXXXXXXXXXXXAAAREAWRGYLLRNKSIVVDLFQGQLRSALTCDECGHVSVTFDPFMYLSVPV 225
BLAST of jgi.p|Trimin1|143180 vs. uniprot
Match: A0A835Z5P0_9STRA (USP domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5P0_9STRA) HSP 1 Score: 245 bits (625), Expect = 4.120e-79 Identity = 128/197 (64.97%), Postives = 140/197 (71.07%), Query Frame = 1
Query: 85 MGNTCFMNTALQCLSNCVPLTDYFLAYDFRKEINASNRRGHGGAVAEAYGQLVNTLWGLGGEDGGSAGXXXGAPAVAAVTTLTPSDFKAAIDRVIPHFQGFQQHDVHEYLAFLLDAIHEDLNRVVVTSAXXXXXXXXXXXXXXXXAAAREAWRGYLLRNKSIVVDLFQGQLRSALTCDECGHVSVTFDPFMYLSVPV 675
MGNTCFMNTALQCLSNC+PLTDYFL YDF+KEINA+N G GAVAEAYG LVNTLW G+ G L PSDFK+AID V+PHFQG+ QHDVHE+LAFLLDA+HEDLNRV AAAREAWRGYLLRNK I+VDLFQGQLRS+L C C H SVTFDPFMYLSVP+
Sbjct: 1 MGNTCFMNTALQCLSNCIPLTDYFLGYDFKKEINATNPIGFKGAVAEAYGLLVNTLW------QGARGD-----------ALAPSDFKSAIDAVMPHFQGYAQHDVHEFLAFLLDAVHEDLNRV--------------------EAAAREAWRGYLLRNKPIIVDLFQGQLRSSLQCRRCLHTSVTFDPFMYLSVPM 160
BLAST of jgi.p|Trimin1|143180 vs. uniprot
Match: D7G7E8_ECTSI (USP domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7E8_ECTSI) HSP 1 Score: 194 bits (493), Expect = 1.110e-57 Identity = 100/201 (49.75%), Postives = 123/201 (61.19%), Query Frame = 1
Query: 73 GLTNMGNTCFMNTALQCLSNCVPLTDYFLAYDFRKEINASNRRGHGGAVAEAYGQLVNTLWGLGGEDGGSAGXXXGAPAVAAVTTLTPSDFKAAIDRVIPHFQGFQQHDVHEYLAFLLDAIHEDLNRVVVTSAXXXXXXXXXXXXXXXXAAAREAWRGYLLRNKSIVVDLFQGQLRSALTCDECGHVSVTFDPFMYLSVPV 675
GL N+GNTCFMN+ALQCL NC L DYFL +D+++EIN N GH G +A A+G L N +W + +L P DFK + +P F G++Q DV E+LAFLLDA+HEDLNRV + A +AW+GYL RN+SI+VDLFQGQLRSAL C CG SVTFDPFMYLSVP+
Sbjct: 25 GLQNLGNTCFMNSALQCLFNCEALADYFLGFDWKREINRGNFLGHKGLMASAFGSLANDMW------------------RSDKASLRPGDFKTQVGESMPLFAGYEQQDVQEFLAFLLDAVHEDLNRVP-NADRKYVEAKEAKEGEAEEMVAMQAWKGYLERNRSIIVDLFQGQLRSALQCSVCGRRSVTFDPFMYLSVPL 206
BLAST of jgi.p|Trimin1|143180 vs. uniprot
Match: A0A7S2Y964_9STRA (Hypothetical protein (Fragment) n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2Y964_9STRA) HSP 1 Score: 184 bits (468), Expect = 1.610e-55 Identity = 98/198 (49.49%), Postives = 121/198 (61.11%), Query Frame = 1
Query: 85 MGNTCFMNTALQCLSNCVPLTDYFLAYDFRKEINASNRRGHG-GAVAEAYGQLVNTLWGLGGEDGGSAGXXXGAPAVAAVTTLTPSDFKAAIDRVIPHFQGFQQHDVHEYLAFLLDAIHEDLNRVVVTSAXXXXXXXXXXXXXXXXAAAREAWRGYLLRNKSIVVDLFQGQLRSALTCDECGHVSVTFDPFMYLSVPV 675
MGNTCFMN++LQCLS +PLTDYFL YD+++EIN N G G G +A AY +++ LW G S ++ PS FK + P FQG+QQHD E LAF+LD IHEDLNRV A EAW+ YLLRNKSIVVD+FQGQL+S LTC CGH++V F+PFMYLS+P+
Sbjct: 1 MGNTCFMNSSLQCLSATIPLTDYFLGYDYKREINHDNPLGTGHGQLATAYANMLSNLW-----SGKSL-------------SIKPSKFKKQLGEFAPQFQGYQQHDAQELLAFMLDGIHEDLNRV----KQKPYIEDKDCTGENDEQDAMEAWKNYLLRNKSIVVDIFQGQLKSRLTCLVCGHINVRFEPFMYLSLPI 176
BLAST of jgi.p|Trimin1|143180 vs. uniprot
Match: A0A1Z5K1T7_FISSO (Ubiquitin carboxyl-terminal hydrolase n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K1T7_FISSO) HSP 1 Score: 189 bits (481), Expect = 3.540e-54 Identity = 99/231 (42.86%), Postives = 136/231 (58.87%), Query Frame = 1
Query: 4 NYDEVHELVLSRLSGPQYHRGL-------LGLTNMGNTCFMNTALQCLSNCVPLTDYFLAYDFRKEINASNRRGHGGAVAEAYGQLVNTLWGLGGEDGGSAGXXXGAPAVAAVTTLTPSDFKAAIDRVIPHFQGFQQHDVHEYLAFLLDAIHEDLNRVVVTSAXXXXXXXXXXXXXXXXAAAREAWRGYLLRNKSIVVDLFQGQLRSALTCDECGHVSVTFDPFMYLSVPV 675
NY+ V + V S+ Q RG+ +GLTN+GNTCF+N+++QCLS +PLTDYFL YD+R EIN N G GG + +AY QL+ +W LG + T+ P FKA ++ P F+G+ QHD E+L+FLLD IHEDLNR+ A EAW+ YL R+KS++VD+FQGQLRS + C +C H ++ F+PFMYLS+P+
Sbjct: 68 NYNHVSDAVASQFQEMQTARGISHLPIGVIGLTNLGNTCFLNSSIQCLSATIPLTDYFLGYDYRSEINHDNFLGTGGKLVKAYAQLMKDMW-LGRQ-----------------LTVAPVAFKAQLELFAPQFKGYHQHDAQEFLSFLLDGIHEDLNRI----KKKPYIEDKDCDGTSDEQDAIEAWKNYLCRDKSLIVDIFQGQLRSEVQCLKCRHKNIRFEPFMYLSLPI 276
BLAST of jgi.p|Trimin1|143180 vs. uniprot
Match: A0A7R9WIF9_9STRA (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9WIF9_9STRA) HSP 1 Score: 191 bits (486), Expect = 5.210e-54 Identity = 107/239 (44.77%), Postives = 133/239 (55.65%), Query Frame = 1
Query: 1 SNYDEVHELVLSRLSGPQYHR---GLLGLTNMGNTCFMNTALQCLSNCVPLTDYFLAYDFRKEINASNRRGHGGAVAEAYGQLVNTLWGLGGEDGGSAGXXXGAPAVAAVTTLTPSDFKAAIDRVIPHFQGFQQHDVHEYLAFLLDAIHEDLNRVVVTSAXXXXXXXXXXXXXXXXAAAREAWRGYLLRNKSIVVDLFQGQLRSALTCDE-----------CGHVSVTFDPFMYLSVPV 675
S YD VH +VL+ G + GL+GL N+GNTCF+N++LQCLSN +PLTDYFL Y++RKEIN +N G G + AY LV LW + ++ PS FK+++D+ P FQG QHD E LAFLLD IHEDLNRV A AW YL RN+SIVVDLFQGQLRS + C CGH +V F+PFMYLS+P+
Sbjct: 149 STYDHVHNVVLTTFEGQDVLKRRAGLVGLRNLGNTCFLNSSLQCLSNTIPLTDYFLGYNYRKEINYTNFLGSKGELVTAYAALVKNLW------------------MGDNKSIDPSIFKSSLDKFAPQFQGCNQHDTQELLAFLLDGIHEDLNRV----KKRPYIEDKDCDGTNDEGDAILAWENYLQRNRSIVVDLFQGQLRSTIDCCNSAKLKMDGSHGCGHKAVKFEPFMYLSLPI 365
BLAST of jgi.p|Trimin1|143180 vs. uniprot
Match: A0A812V5A1_SYMMI (USP8 protein (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812V5A1_SYMMI) HSP 1 Score: 185 bits (469), Expect = 6.120e-54 Identity = 91/203 (44.83%), Postives = 124/203 (61.08%), Query Frame = 1
Query: 67 LLGLTNMGNTCFMNTALQCLSNCVPLTDYFLAYDFRKEINASNRRGHGGAVAEAYGQLVNTLWGLGGEDGGSAGXXXGAPAVAAVTTLTPSDFKAAIDRVIPHFQGFQQHDVHEYLAFLLDAIHEDLNRVVVTSAXXXXXXXXXXXXXXXXAAAREAWRGYLLRNKSIVVDLFQGQLRSALTCDECGHVSVTFDPFMYLSVPV 675
++GL N+GNTCF+N++LQCL N +PL DYF +D+++EIN SN G GG +AE +G LV+T+W ++++P+ FK A+ P F G+ QHD E LAFLLD +HEDLNRVV A E+W+ YLLRN+SI+VD+FQGQLR+ L C +C + S FDPFMY+SVP+
Sbjct: 1 MIGLKNLGNTCFLNSSLQCLVNTIPLMDYFAGFDWKREINLSNPIGTGGVIAEQFGYLVDTMWDS-----------------RVSSSISPTSFKRALGTFWPQFSGYDQHDAQELLAFLLDGLHEDLNRVV----NKPYVEDVESDNREPAEVAVESWKAYLLRNRSIIVDIFQGQLRNVLCCLDCKYTSYKFDPFMYMSVPI 182
BLAST of jgi.p|Trimin1|143180 vs. uniprot
Match: A0A1E7FE03_9STRA (Cysteine proteinase (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FE03_9STRA) HSP 1 Score: 182 bits (463), Expect = 5.110e-53 Identity = 90/204 (44.12%), Postives = 120/204 (58.82%), Query Frame = 1
Query: 64 GLLGLTNMGNTCFMNTALQCLSNCVPLTDYFLAYDFRKEINASNRRGHGGAVAEAYGQLVNTLWGLGGEDGGSAGXXXGAPAVAAVTTLTPSDFKAAIDRVIPHFQGFQQHDVHEYLAFLLDAIHEDLNRVVVTSAXXXXXXXXXXXXXXXXAAAREAWRGYLLRNKSIVVDLFQGQLRSALTCDECGHVSVTFDPFMYLSVPV 675
G++GL N+GNTCF+N++LQCLS +PLTDYFL YD+R EIN N G GG ++ AY +L +W + + + + P FK ++ P F G+ QHD E LAFLLD IHEDLNRV A E W+ YL RNKS++VD+FQGQ+R+ TC CGHV++ F+PFMYLS+P+
Sbjct: 1 GVIGLRNLGNTCFLNSSLQCLSATIPLTDYFLGYDYRSEINKKNFLGTGGRLSTAYAELTKQMW------------------LGSKSVVEPISFKKQLETFAPQFVGYHQHDAQELLAFLLDGIHEDLNRV----KERPYIEDHDCDGSNNEEDAVENWKNYLRRNKSLIVDMFQGQIRNTCTCLTCGHVNIRFEPFMYLSLPI 182
BLAST of jgi.p|Trimin1|143180 vs. uniprot
Match: A0A448ZB53_9STRA (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZB53_9STRA) HSP 1 Score: 189 bits (480), Expect = 6.830e-53 Identity = 98/232 (42.24%), Postives = 130/232 (56.03%), Query Frame = 1
Query: 1 SNYDEVHELVLSRLSGPQYHR-------GLLGLTNMGNTCFMNTALQCLSNCVPLTDYFLAYDFRKEINASNRRGHGGAVAEAYGQLVNTLWGLGGEDGGSAGXXXGAPAVAAVTTLTPSDFKAAIDRVIPHFQGFQQHDVHEYLAFLLDAIHEDLNRVVVTSAXXXXXXXXXXXXXXXXAAAREAWRGYLLRNKSIVVDLFQGQLRSALTCDECGHVSVTFDPFMYLSVPV 675
S Y VH++V+ LS + + G++GL N+GNTCF+N++LQCLS +PLTDYFL YD+R EIN N G GG + AY +L LW + + + + P DFK + P F G+ QHD E LAFLLD IHEDLNRV A E W+ YL RNKS+VVD+FQGQLR+ C +CG +++ F+PFMYLS+P+
Sbjct: 112 STYSHVHDIVMYNLSEAEISKHDQNVPMGVIGLKNLGNTCFLNSSLQCLSATIPLTDYFLGYDYRSEINKKNFLGTGGKLVTAYAELTKQLW------------------LGSKSVVEPIDFKKQLQTFAPQFLGYHQHDAQELLAFLLDGIHEDLNRV----KERPYVEDRDCDGSNDEEDAVENWKNYLRRNKSLVVDMFQGQLRNTCKCLKCGQINIRFEPFMYLSLPI 321
BLAST of jgi.p|Trimin1|143180 vs. uniprot
Match: B7G036_PHATC (Predicted protein (Fragment) n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7G036_PHATC) HSP 1 Score: 182 bits (462), Expect = 9.600e-53 Identity = 96/204 (47.06%), Postives = 126/204 (61.76%), Query Frame = 1
Query: 64 GLLGLTNMGNTCFMNTALQCLSNCVPLTDYFLAYDFRKEINASNRRGHGGAVAEAYGQLVNTLWGLGGEDGGSAGXXXGAPAVAAVTTLTPSDFKAAIDRVIPHFQGFQQHDVHEYLAFLLDAIHEDLNRVVVTSAXXXXXXXXXXXXXXXXAAAREAWRGYLLRNKSIVVDLFQGQLRSALTCDECGHVSVTFDPFMYLSVPV 675
G++GL N+GNTCF+N++LQCLS +PLTDYFL YD+R EIN N G GG +A AY +L+ LW A G ++A + P+ FK++++ P F G QHD E L+FLLD IHEDLNR+ A EAW+ YL R+KS+VVD+FQGQLR+ LTC C HV+V F+PFMYLS+P+
Sbjct: 1 GVVGLRNLGNTCFLNSSLQCLSATIPLTDYFLGYDYRSEINQHNVLGTGGKLATAYAELMKELW-------LQAAPVSGYTKISA-RVVKPTRFKSSLESFAPQFLGTSQHDAQELLSFLLDGIHEDLNRI----PKKPYIEDRDCDGTHDERDAIEAWKNYLRRDKSLVVDIFQGQLRNTLTCLTCRHVNVRFEPFMYLSLPL 192 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|143180 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_4398 ID=mRNA_4398|Name=jgi.p|Trimin1|143180|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=675bp|location=Sequence derived from alignment at Contig_41:111380..113839+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. TCCAACTATGACGAGGTGCATGAGCTGGTGCTGTCCAGATTATCAGGGCCback to top protein sequence of jgi.p|Trimin1|143180 >Trimin1|143180|gw1.41.83.1 ID=Trimin1|143180|gw1.41.83.1|Name=jgi.p|Trimin1|143180|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=225bp SNYDEVHELVLSRLSGPQYHRGLLGLTNMGNTCFMNTALQCLSNCVPLTDback to top mRNA from alignment at Contig_41:111380..113839+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_4398 ID=mRNA_4398|Name=jgi.p|Trimin1|143180|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2460bp|location=Sequence derived from alignment at Contig_41:111380..113839+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_41:111380..113839+ >mRNA_4398 ID=mRNA_4398|Name=jgi.p|Trimin1|143180|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=675bp|location=Sequence derived from alignment at Contig_41:111380..113839+ (Tribonema minus UTEX_B_3156 )back to top |