mRNA_4398 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|143180
Unique NamemRNA_4398
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|143180 vs. uniprot
Match: A0A835YTE2_9STRA (USP domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTE2_9STRA)

HSP 1 Score: 412 bits (1060), Expect = 3.820e-145
Identity = 225/225 (100.00%), Postives = 225/225 (100.00%), Query Frame = 1
Query:    1 SNYDEVHELVLSRLSGPQYHRGLLGLTNMGNTCFMNTALQCLSNCVPLTDYFLAYDFRKEINASNRRGHGGAVAEAYGQLVNTLWGLGGEDGGSAGXXXGAPAVAAVTTLTPSDFKAAIDRVIPHFQGFQQHDVHEYLAFLLDAIHEDLNRVVVTSAXXXXXXXXXXXXXXXXAAAREAWRGYLLRNKSIVVDLFQGQLRSALTCDECGHVSVTFDPFMYLSVPV 675
            SNYDEVHELVLSRLSGPQYHRGLLGLTNMGNTCFMNTALQCLSNCVPLTDYFLAYDFRKEINASNRRGHGGAVAEAYGQLVNTLWGLGGEDGGSAGXXXGAPAVAAVTTLTPSDFKAAIDRVIPHFQGFQQHDVHEYLAFLLDAIHEDLNRVVVTSAXXXXXXXXXXXXXXXXAAAREAWRGYLLRNKSIVVDLFQGQLRSALTCDECGHVSVTFDPFMYLSVPV
Sbjct:    1 SNYDEVHELVLSRLSGPQYHRGLLGLTNMGNTCFMNTALQCLSNCVPLTDYFLAYDFRKEINASNRRGHGGAVAEAYGQLVNTLWGLGGEDGGSAGXXXGAPAVAAVTTLTPSDFKAAIDRVIPHFQGFQQHDVHEYLAFLLDAIHEDLNRVVVTSAXXXXXXXXXXXXXXXXAAAREAWRGYLLRNKSIVVDLFQGQLRSALTCDECGHVSVTFDPFMYLSVPV 225          
BLAST of jgi.p|Trimin1|143180 vs. uniprot
Match: A0A835Z5P0_9STRA (USP domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5P0_9STRA)

HSP 1 Score: 245 bits (625), Expect = 4.120e-79
Identity = 128/197 (64.97%), Postives = 140/197 (71.07%), Query Frame = 1
Query:   85 MGNTCFMNTALQCLSNCVPLTDYFLAYDFRKEINASNRRGHGGAVAEAYGQLVNTLWGLGGEDGGSAGXXXGAPAVAAVTTLTPSDFKAAIDRVIPHFQGFQQHDVHEYLAFLLDAIHEDLNRVVVTSAXXXXXXXXXXXXXXXXAAAREAWRGYLLRNKSIVVDLFQGQLRSALTCDECGHVSVTFDPFMYLSVPV 675
            MGNTCFMNTALQCLSNC+PLTDYFL YDF+KEINA+N  G  GAVAEAYG LVNTLW       G+ G             L PSDFK+AID V+PHFQG+ QHDVHE+LAFLLDA+HEDLNRV                     AAAREAWRGYLLRNK I+VDLFQGQLRS+L C  C H SVTFDPFMYLSVP+
Sbjct:    1 MGNTCFMNTALQCLSNCIPLTDYFLGYDFKKEINATNPIGFKGAVAEAYGLLVNTLW------QGARGD-----------ALAPSDFKSAIDAVMPHFQGYAQHDVHEFLAFLLDAVHEDLNRV--------------------EAAAREAWRGYLLRNKPIIVDLFQGQLRSSLQCRRCLHTSVTFDPFMYLSVPM 160          
BLAST of jgi.p|Trimin1|143180 vs. uniprot
Match: D7G7E8_ECTSI (USP domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7E8_ECTSI)

HSP 1 Score: 194 bits (493), Expect = 1.110e-57
Identity = 100/201 (49.75%), Postives = 123/201 (61.19%), Query Frame = 1
Query:   73 GLTNMGNTCFMNTALQCLSNCVPLTDYFLAYDFRKEINASNRRGHGGAVAEAYGQLVNTLWGLGGEDGGSAGXXXGAPAVAAVTTLTPSDFKAAIDRVIPHFQGFQQHDVHEYLAFLLDAIHEDLNRVVVTSAXXXXXXXXXXXXXXXXAAAREAWRGYLLRNKSIVVDLFQGQLRSALTCDECGHVSVTFDPFMYLSVPV 675
            GL N+GNTCFMN+ALQCL NC  L DYFL +D+++EIN  N  GH G +A A+G L N +W                   +   +L P DFK  +   +P F G++Q DV E+LAFLLDA+HEDLNRV   +                   A +AW+GYL RN+SI+VDLFQGQLRSAL C  CG  SVTFDPFMYLSVP+
Sbjct:   25 GLQNLGNTCFMNSALQCLFNCEALADYFLGFDWKREINRGNFLGHKGLMASAFGSLANDMW------------------RSDKASLRPGDFKTQVGESMPLFAGYEQQDVQEFLAFLLDAVHEDLNRVP-NADRKYVEAKEAKEGEAEEMVAMQAWKGYLERNRSIIVDLFQGQLRSALQCSVCGRRSVTFDPFMYLSVPL 206          
BLAST of jgi.p|Trimin1|143180 vs. uniprot
Match: A0A7S2Y964_9STRA (Hypothetical protein (Fragment) n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2Y964_9STRA)

HSP 1 Score: 184 bits (468), Expect = 1.610e-55
Identity = 98/198 (49.49%), Postives = 121/198 (61.11%), Query Frame = 1
Query:   85 MGNTCFMNTALQCLSNCVPLTDYFLAYDFRKEINASNRRGHG-GAVAEAYGQLVNTLWGLGGEDGGSAGXXXGAPAVAAVTTLTPSDFKAAIDRVIPHFQGFQQHDVHEYLAFLLDAIHEDLNRVVVTSAXXXXXXXXXXXXXXXXAAAREAWRGYLLRNKSIVVDLFQGQLRSALTCDECGHVSVTFDPFMYLSVPV 675
            MGNTCFMN++LQCLS  +PLTDYFL YD+++EIN  N  G G G +A AY  +++ LW      G S              ++ PS FK  +    P FQG+QQHD  E LAF+LD IHEDLNRV                       A EAW+ YLLRNKSIVVD+FQGQL+S LTC  CGH++V F+PFMYLS+P+
Sbjct:    1 MGNTCFMNSSLQCLSATIPLTDYFLGYDYKREINHDNPLGTGHGQLATAYANMLSNLW-----SGKSL-------------SIKPSKFKKQLGEFAPQFQGYQQHDAQELLAFMLDGIHEDLNRV----KQKPYIEDKDCTGENDEQDAMEAWKNYLLRNKSIVVDIFQGQLKSRLTCLVCGHINVRFEPFMYLSLPI 176          
BLAST of jgi.p|Trimin1|143180 vs. uniprot
Match: A0A1Z5K1T7_FISSO (Ubiquitin carboxyl-terminal hydrolase n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K1T7_FISSO)

HSP 1 Score: 189 bits (481), Expect = 3.540e-54
Identity = 99/231 (42.86%), Postives = 136/231 (58.87%), Query Frame = 1
Query:    4 NYDEVHELVLSRLSGPQYHRGL-------LGLTNMGNTCFMNTALQCLSNCVPLTDYFLAYDFRKEINASNRRGHGGAVAEAYGQLVNTLWGLGGEDGGSAGXXXGAPAVAAVTTLTPSDFKAAIDRVIPHFQGFQQHDVHEYLAFLLDAIHEDLNRVVVTSAXXXXXXXXXXXXXXXXAAAREAWRGYLLRNKSIVVDLFQGQLRSALTCDECGHVSVTFDPFMYLSVPV 675
            NY+ V + V S+    Q  RG+       +GLTN+GNTCF+N+++QCLS  +PLTDYFL YD+R EIN  N  G GG + +AY QL+  +W LG +                  T+ P  FKA ++   P F+G+ QHD  E+L+FLLD IHEDLNR+                       A EAW+ YL R+KS++VD+FQGQLRS + C +C H ++ F+PFMYLS+P+
Sbjct:   68 NYNHVSDAVASQFQEMQTARGISHLPIGVIGLTNLGNTCFLNSSIQCLSATIPLTDYFLGYDYRSEINHDNFLGTGGKLVKAYAQLMKDMW-LGRQ-----------------LTVAPVAFKAQLELFAPQFKGYHQHDAQEFLSFLLDGIHEDLNRI----KKKPYIEDKDCDGTSDEQDAIEAWKNYLCRDKSLIVDIFQGQLRSEVQCLKCRHKNIRFEPFMYLSLPI 276          
BLAST of jgi.p|Trimin1|143180 vs. uniprot
Match: A0A7R9WIF9_9STRA (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9WIF9_9STRA)

HSP 1 Score: 191 bits (486), Expect = 5.210e-54
Identity = 107/239 (44.77%), Postives = 133/239 (55.65%), Query Frame = 1
Query:    1 SNYDEVHELVLSRLSGPQYHR---GLLGLTNMGNTCFMNTALQCLSNCVPLTDYFLAYDFRKEINASNRRGHGGAVAEAYGQLVNTLWGLGGEDGGSAGXXXGAPAVAAVTTLTPSDFKAAIDRVIPHFQGFQQHDVHEYLAFLLDAIHEDLNRVVVTSAXXXXXXXXXXXXXXXXAAAREAWRGYLLRNKSIVVDLFQGQLRSALTCDE-----------CGHVSVTFDPFMYLSVPV 675
            S YD VH +VL+   G    +   GL+GL N+GNTCF+N++LQCLSN +PLTDYFL Y++RKEIN +N  G  G +  AY  LV  LW                  +    ++ PS FK+++D+  P FQG  QHD  E LAFLLD IHEDLNRV                       A  AW  YL RN+SIVVDLFQGQLRS + C             CGH +V F+PFMYLS+P+
Sbjct:  149 STYDHVHNVVLTTFEGQDVLKRRAGLVGLRNLGNTCFLNSSLQCLSNTIPLTDYFLGYNYRKEINYTNFLGSKGELVTAYAALVKNLW------------------MGDNKSIDPSIFKSSLDKFAPQFQGCNQHDTQELLAFLLDGIHEDLNRV----KKRPYIEDKDCDGTNDEGDAILAWENYLQRNRSIVVDLFQGQLRSTIDCCNSAKLKMDGSHGCGHKAVKFEPFMYLSLPI 365          
BLAST of jgi.p|Trimin1|143180 vs. uniprot
Match: A0A812V5A1_SYMMI (USP8 protein (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812V5A1_SYMMI)

HSP 1 Score: 185 bits (469), Expect = 6.120e-54
Identity = 91/203 (44.83%), Postives = 124/203 (61.08%), Query Frame = 1
Query:   67 LLGLTNMGNTCFMNTALQCLSNCVPLTDYFLAYDFRKEINASNRRGHGGAVAEAYGQLVNTLWGLGGEDGGSAGXXXGAPAVAAVTTLTPSDFKAAIDRVIPHFQGFQQHDVHEYLAFLLDAIHEDLNRVVVTSAXXXXXXXXXXXXXXXXAAAREAWRGYLLRNKSIVVDLFQGQLRSALTCDECGHVSVTFDPFMYLSVPV 675
            ++GL N+GNTCF+N++LQCL N +PL DYF  +D+++EIN SN  G GG +AE +G LV+T+W                      ++++P+ FK A+    P F G+ QHD  E LAFLLD +HEDLNRVV                      A E+W+ YLLRN+SI+VD+FQGQLR+ L C +C + S  FDPFMY+SVP+
Sbjct:    1 MIGLKNLGNTCFLNSSLQCLVNTIPLMDYFAGFDWKREINLSNPIGTGGVIAEQFGYLVDTMWDS-----------------RVSSSISPTSFKRALGTFWPQFSGYDQHDAQELLAFLLDGLHEDLNRVV----NKPYVEDVESDNREPAEVAVESWKAYLLRNRSIIVDIFQGQLRNVLCCLDCKYTSYKFDPFMYMSVPI 182          
BLAST of jgi.p|Trimin1|143180 vs. uniprot
Match: A0A1E7FE03_9STRA (Cysteine proteinase (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FE03_9STRA)

HSP 1 Score: 182 bits (463), Expect = 5.110e-53
Identity = 90/204 (44.12%), Postives = 120/204 (58.82%), Query Frame = 1
Query:   64 GLLGLTNMGNTCFMNTALQCLSNCVPLTDYFLAYDFRKEINASNRRGHGGAVAEAYGQLVNTLWGLGGEDGGSAGXXXGAPAVAAVTTLTPSDFKAAIDRVIPHFQGFQQHDVHEYLAFLLDAIHEDLNRVVVTSAXXXXXXXXXXXXXXXXAAAREAWRGYLLRNKSIVVDLFQGQLRSALTCDECGHVSVTFDPFMYLSVPV 675
            G++GL N+GNTCF+N++LQCLS  +PLTDYFL YD+R EIN  N  G GG ++ AY +L   +W                  + + + + P  FK  ++   P F G+ QHD  E LAFLLD IHEDLNRV                       A E W+ YL RNKS++VD+FQGQ+R+  TC  CGHV++ F+PFMYLS+P+
Sbjct:    1 GVIGLRNLGNTCFLNSSLQCLSATIPLTDYFLGYDYRSEINKKNFLGTGGRLSTAYAELTKQMW------------------LGSKSVVEPISFKKQLETFAPQFVGYHQHDAQELLAFLLDGIHEDLNRV----KERPYIEDHDCDGSNNEEDAVENWKNYLRRNKSLIVDMFQGQIRNTCTCLTCGHVNIRFEPFMYLSLPI 182          
BLAST of jgi.p|Trimin1|143180 vs. uniprot
Match: A0A448ZB53_9STRA (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZB53_9STRA)

HSP 1 Score: 189 bits (480), Expect = 6.830e-53
Identity = 98/232 (42.24%), Postives = 130/232 (56.03%), Query Frame = 1
Query:    1 SNYDEVHELVLSRLSGPQYHR-------GLLGLTNMGNTCFMNTALQCLSNCVPLTDYFLAYDFRKEINASNRRGHGGAVAEAYGQLVNTLWGLGGEDGGSAGXXXGAPAVAAVTTLTPSDFKAAIDRVIPHFQGFQQHDVHEYLAFLLDAIHEDLNRVVVTSAXXXXXXXXXXXXXXXXAAAREAWRGYLLRNKSIVVDLFQGQLRSALTCDECGHVSVTFDPFMYLSVPV 675
            S Y  VH++V+  LS  +  +       G++GL N+GNTCF+N++LQCLS  +PLTDYFL YD+R EIN  N  G GG +  AY +L   LW                  + + + + P DFK  +    P F G+ QHD  E LAFLLD IHEDLNRV                       A E W+ YL RNKS+VVD+FQGQLR+   C +CG +++ F+PFMYLS+P+
Sbjct:  112 STYSHVHDIVMYNLSEAEISKHDQNVPMGVIGLKNLGNTCFLNSSLQCLSATIPLTDYFLGYDYRSEINKKNFLGTGGKLVTAYAELTKQLW------------------LGSKSVVEPIDFKKQLQTFAPQFLGYHQHDAQELLAFLLDGIHEDLNRV----KERPYVEDRDCDGSNDEEDAVENWKNYLRRNKSLVVDMFQGQLRNTCKCLKCGQINIRFEPFMYLSLPI 321          
BLAST of jgi.p|Trimin1|143180 vs. uniprot
Match: B7G036_PHATC (Predicted protein (Fragment) n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7G036_PHATC)

HSP 1 Score: 182 bits (462), Expect = 9.600e-53
Identity = 96/204 (47.06%), Postives = 126/204 (61.76%), Query Frame = 1
Query:   64 GLLGLTNMGNTCFMNTALQCLSNCVPLTDYFLAYDFRKEINASNRRGHGGAVAEAYGQLVNTLWGLGGEDGGSAGXXXGAPAVAAVTTLTPSDFKAAIDRVIPHFQGFQQHDVHEYLAFLLDAIHEDLNRVVVTSAXXXXXXXXXXXXXXXXAAAREAWRGYLLRNKSIVVDLFQGQLRSALTCDECGHVSVTFDPFMYLSVPV 675
            G++GL N+GNTCF+N++LQCLS  +PLTDYFL YD+R EIN  N  G GG +A AY +L+  LW         A    G   ++A   + P+ FK++++   P F G  QHD  E L+FLLD IHEDLNR+                       A EAW+ YL R+KS+VVD+FQGQLR+ LTC  C HV+V F+PFMYLS+P+
Sbjct:    1 GVVGLRNLGNTCFLNSSLQCLSATIPLTDYFLGYDYRSEINQHNVLGTGGKLATAYAELMKELW-------LQAAPVSGYTKISA-RVVKPTRFKSSLESFAPQFLGTSQHDAQELLSFLLDGIHEDLNRI----PKKPYIEDRDCDGTHDERDAIEAWKNYLRRDKSLVVDIFQGQLRNTLTCLTCRHVNVRFEPFMYLSLPL 192          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|143180 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YTE2_9STRA3.820e-145100.00USP domain-containing protein (Fragment) n=1 Tax=T... [more]
A0A835Z5P0_9STRA4.120e-7964.97USP domain-containing protein n=1 Tax=Tribonema mi... [more]
D7G7E8_ECTSI1.110e-5749.75USP domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A7S2Y964_9STRA1.610e-5549.49Hypothetical protein (Fragment) n=1 Tax=Amphiprora... [more]
A0A1Z5K1T7_FISSO3.540e-5442.86Ubiquitin carboxyl-terminal hydrolase n=2 Tax=Fist... [more]
A0A7R9WIF9_9STRA5.210e-5444.77Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Pseu... [more]
A0A812V5A1_SYMMI6.120e-5444.83USP8 protein (Fragment) n=1 Tax=Symbiodinium micro... [more]
A0A1E7FE03_9STRA5.110e-5344.12Cysteine proteinase (Fragment) n=1 Tax=Fragilariop... [more]
A0A448ZB53_9STRA6.830e-5342.24Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Pseu... [more]
B7G036_PHATC9.600e-5347.06Predicted protein (Fragment) n=1 Tax=Phaeodactylum... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_41contigContig_41:111380..113839 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|143180|gw1.41.83.1
BRITEko00000,ko00001,ko01000,ko01002,ko04121,ko04131
KEGG Pathwayko04137,ko04144,ko04934,map04137,map04144,map04934
KEGG koko:K11833,ko:K11837,ko:K11839
EC3.4.19.12
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005769,GO:0012505,GO:0031410,GO:0031982,GO:0043226,GO:0043227,GO:0043229,GO:0044424,GO:0044444,GO:0044464,GO:0097708
Descriptionubiquitinyl hydrolase activity
COG categoryO
Max annot lvl2759|Eukaryota
EggNOG OGsKOG1868@1|root,KOG1868@2759|Eukaryota
Evalue1.82e-58
Seed ortholog2880.D7G7E8
Hectar predicted targeting categoryother localisation
TranscriptId143502
TrackFilteredModels1
ProteinId143180
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|143180gene_4398Tribonema minus UTEX_B_3156 geneContig_41 111380..113839 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_4398_1exon_4398_1Tribonema minus UTEX_B_3156 exonContig_41 111380..111556 +
exon_4398_2exon_4398_2Tribonema minus UTEX_B_3156 exonContig_41 112097..112406 +
exon_4398_3exon_4398_3Tribonema minus UTEX_B_3156 exonContig_41 113652..113839 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_4398CDS_4398Tribonema minus UTEX_B_3156 CDSContig_41 111380..111556 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|143180Trimin1|143180|gw1.41.83.1Tribonema minus UTEX_B_3156 polypeptideContig_41 111380..113839 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_4398 ID=mRNA_4398|Name=jgi.p|Trimin1|143180|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=675bp|location=Sequence derived from alignment at Contig_41:111380..113839+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
TCCAACTATGACGAGGTGCATGAGCTGGTGCTGTCCAGATTATCAGGGCC
ACAGTACCACAGGGGTCTGCTGGGACTGACCAACATGGGCAATACCTGCT
TCATGAACACTGCGCTCCAGTGCCTCAGCAACTGCGTGCCGCTGACCGAC
TACTTCCTGGCATACGACTTCAGGAAGGAGATCAACGCATCAAACCGCCG
CGGCCACGGCGGTGCGGTGGCGGAGGCCTACGGCCAGCTGGTCAACACGC
TGTGGGGGTTGGGGGGCGAGGACGGGGGGAGTGCAGGGGGCGAGGGGGGC
GCCCCCGCCGTGGCGGCGGTTACGACGCTCACGCCGTCGGACTTCAAGGC
GGCGATAGACAGAGTCATCCCGCACTTTCAGGGGTTCCAGCAGCACGACG
TGCACGAGTACCTGGCGTTTCTGCTAGACGCGATACATGAGGACCTGAAC
CGGGTCGTCGTGACGAGCGCTGCCGTTGATGGCGCTGCGGCGGCGGCGGC
GGCGCGCACGCGCGAGGAGGCGGCGGCGCGCGAGGCGTGGCGCGGCTACC
TGCTGCGCAACAAGTCCATTGTCGTGGACCTGTTCCAGGGGCAGCTACGC
TCGGCGCTCACGTGCGACGAGTGCGGGCACGTCAGCGTCACGTTCGACCC
CTTCATGTACCTGAGCGTGCCGGTG
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protein sequence of jgi.p|Trimin1|143180

>Trimin1|143180|gw1.41.83.1 ID=Trimin1|143180|gw1.41.83.1|Name=jgi.p|Trimin1|143180|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=225bp
SNYDEVHELVLSRLSGPQYHRGLLGLTNMGNTCFMNTALQCLSNCVPLTD
YFLAYDFRKEINASNRRGHGGAVAEAYGQLVNTLWGLGGEDGGSAGGEGG
APAVAAVTTLTPSDFKAAIDRVIPHFQGFQQHDVHEYLAFLLDAIHEDLN
RVVVTSAAVDGAAAAAAARTREEAAAREAWRGYLLRNKSIVVDLFQGQLR
SALTCDECGHVSVTFDPFMYLSVPV
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mRNA from alignment at Contig_41:111380..113839+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4398 ID=mRNA_4398|Name=jgi.p|Trimin1|143180|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2460bp|location=Sequence derived from alignment at Contig_41:111380..113839+ (Tribonema minus UTEX_B_3156 )
TCCAACTATGACGAGGTGCATGAGCTGGTGCTGTCCAGATTATCAGGGCC ACAGTACCACAGGGGTCTGCTGGGACTGACCAACATGGGCAATACCTGCT TCATGAACACTGCGCTCCAGTGCCTCAGCAACTGCGTGCCGCTGACCGAC TACTTCCTGGCATACGACTTCAGGAAGGTGAGTTGCTGCCGCGTGTGCCG TCGCGATGAGCGCTGCTGAAAATTTGCAATGTGATGATGCGCTGTGCGAG AGGAGGTCTGTGTCAGCATGGCTTCATCAGGAAGTGGTTGGTACGTTCGA TGCGATGCTTTCAGGTGTCGGCAGCGGTGCAGTAAGCATTGATGAAAAGC ATCGTCAGCGATGGAAGCAGGTAGTAGTCCATGCAGCGCTGTTGAGGCGC AGGAGTTCAACTGCTGCCAGCATGCTCTTGCAGGGGGCATTCTCGCTTCC CGCTCATCGTTGCTTACATGCTGATAAACACCACGACCACAACCTGCAAC GAAGCAGAGGCGACGCTGCAGGATAGCTGTGAACGCCCGCTGGTTAGGCG TCTTAAGTCCTTGTCGTTGAGAGGCGCTACTCATACTTAGCGCGACTTCT TCTGTTGCTCACAAATAGCGCAGTACATCAACATGTGACAGATTCCTGCG CAACACTGGTGACGCCGCTATGCCGGCCATTTATCACGTCACCATCGCGC TATGCCCTTGTGAGCAGGAGATCAACGCATCAAACCGCCGCGGCCACGGC GGTGCGGTGGCGGAGGCCTACGGCCAGCTGGTCAACACGCTGTGGGGGTT GGGGGGCGAGGACGGGGGGAGTGCAGGGGGCGAGGGGGGCGCCCCCGCCG TGGCGGCGGTTACGACGCTCACGCCGTCGGACTTCAAGGCGGCGATAGAC AGAGTCATCCCGCACTTTCAGGGGTTCCAGCAGCACGACGTGCACGAGTA CCTGGCGTTTCTGCTAGACGCGATACATGAGGACCTGAACCGGGTCGTCG TGACGAGCGCTGCCGTTGATGGCGCTGGTGCGCTGCCGCAGCAGCCGCAG CAGCAGCAGCGCGAAGCGGAGCTGCAGCAGCAGCGATCGCCGCAGAAGGA GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCGCGCAGAGGAGCCGC AGCAGCAGCGCTCGCCGCAGAAGGAGCAGCAACGCTCAGCGCACGACGAG CAGCAGCGCTCGTCGCTGAAGGACCAGCAGCAGCAGCAGCAGCAGCGCGA AGAGGAGGCGCAGCAGCAGCGCTCGCCACAGAAGGAGCAGCAGCGCTCAG CACAGGAGGAGCAGCAGCGCTCAGAGGAAGCGCCGCGCGCAGCGTCGCCG CGGCGGCAGCACAAGCCGCTCGCGATTCCGCAGCTGGCGGGGGTGGTGCT GGGGGGTGGGGAAGCGCGGCCTGGTAGCTTCAGCAATGTAAGGGCAACCA CAGTGCTTTCTGCGTGCCTTGTTGTAGCTGCTGCGAACGAGGGACTGTGC GCCTGCAAGCAGTGGACGAGCGTCATTTCTCGATGTTATGCGGTGCTGAG CTGATACATGCCAGGGGTCCCCCAGAGCACAACATTCACATGCGCTGGTG CGTTGACATTCTAAAAAAAGCAGTGGCGATCGTTAGGTGGCGTGATAGAA TGCCGTGCACTCTATGCGTCACTCATCAAGACTATGGCCTAATAGCGCGA CCAGGTAGCTTTCTGTAGCTGTAGCTTTCGCTCTCGTGCTTGCAGCTCGA GCGCCGCGCTAGCTGCATTATTTCATAATTTGCAGGCGCTCTGGCGTGGT GTGCATGATGCTGAGCATTGTGACCGAGTCGGTGGTGCTCGGCGGTTGCA ATTCTGCACCGTGGTGTCAAGTGCCAATTGCAGTTGATCATCTTAGCGTT AGCATTAGTGTTTCTGATTGTAACCCTAACCCTACCCCCTGTGTACTGAT CATCACCACTGGAATCCCATCCTTGCACCCGCTTGGCCTCTCTACGGACG CTGCCGCAGCGGCCGTCTTTGGCACGGCGGCGGCGCGCTGGCAGCTGGCG GTACGCGCGCCGCCGCTCCAACCCTCTGATTCTGCCTGAACGCATGAATG CCATGGAAGGCATTCAGATTCTTCACCGTACTTCTTCAAAAGCATGAATG CTGCATCACCACACGTGTGTGTGAGGTGACCCTCTCCCCTCCTGCCCGCA CCCCCCTTCCTTCGTCCGCGCAGGCGGCGCTGCGGCGCTCGTCCTCCGGC GGCGGCGGCAGCAGCAGCGCAGCGGCGGCGGCGGCGGCGCGCACGCGCGA GGAGGCGGCGGCGCGCGAGGCGTGGCGCGGCTACCTGCTGCGCAACAAGT CCATTGTCGTGGACCTGTTCCAGGGGCAGCTACGCTCGGCGCTCACGTGC GACGAGTGCGGGCACGTCAGCGTCACGTTCGACCCCTTCATGTACCTGAG CGTGCCGGTG
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Coding sequence (CDS) from alignment at Contig_41:111380..113839+

>mRNA_4398 ID=mRNA_4398|Name=jgi.p|Trimin1|143180|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=675bp|location=Sequence derived from alignment at Contig_41:111380..113839+ (Tribonema minus UTEX_B_3156 )
TCCAACTATGACGAGGTGCATGAGCTGGTGCTGTCCAGATTATCAGGGCC
ACAGTACCACAGGGGTCTGCTGGGACTGACCAACATGGGCAATACCTGCT
TCATGAACACTGCGCTCCAGTGCCTCAGCAACTGCGTGCCGCTGACCGAC
TACTTCCTGGCATACGACTTCAGGAAGGAGATCAACGCATCAAACCGCCG
CGGCCACGGCGGTGCGGTGGCGGAGGCCTACGGCCAGCTGGTCAACACGC
TGTGGGGGTTGGGGGGCGAGGACGGGGGGAGTGCAGGGGGCGAGGGGGGC
GCCCCCGCCGTGGCGGCGGTTACGACGCTCACGCCGTCGGACTTCAAGGC
GGCGATAGACAGAGTCATCCCGCACTTTCAGGGGTTCCAGCAGCACGACG
TGCACGAGTACCTGGCGTTTCTGCTAGACGCGATACATGAGGACCTGAAC
CGGGTCGTCGTGACGAGCGCTGCCGTTGATGGCGCTGCGGCGGCGGCGGC
GGCGCGCACGCGCGAGGAGGCGGCGGCGCGCGAGGCGTGGCGCGGCTACC
TGCTGCGCAACAAGTCCATTGTCGTGGACCTGTTCCAGGGGCAGCTACGC
TCGGCGCTCACGTGCGACGAGTGCGGGCACGTCAGCGTCACGTTCGACCC
CTTCATGTACCTGAGCGTGCCGGTG
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