mRNA_19046 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|354681 vs. uniprot
Match: A0A836CDD2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDD2_9STRA) HSP 1 Score: 130 bits (327), Expect = 5.070e-36 Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 1
Query: 1 MLSLPVRKQDEGGTAVQVGIQPSKVELTKLKLDKDRTALLDRGSARQEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAEWDELVVVEVDGDDGDSDIEMEE 306
MLSLPVRKQDEGGTAVQVGIQPSKVELTKLKLDKDRTALLDRGSARQEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAEWDELVVVEVDGDDGDSDIEMEE
Sbjct: 1 MLSLPVRKQDEGGTAVQVGIQPSKVELTKLKLDKDRTALLDRGSARQEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAEWDELVVVEVDGDDGDSDIEMEE 102
BLAST of jgi.p|Trimin1|354681 vs. uniprot
Match: A0A835YRU4_9STRA (KOW domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRU4_9STRA) HSP 1 Score: 81.3 bits (199), Expect = 1.190e-15 Identity = 37/37 (100.00%), Postives = 37/37 (100.00%), Query Frame = 2
Query: 227 RRVRSGTSLLWWRWMATTATATSRWRSERILGPRPLA 337
RRVRSGTSLLWWRWMATTATATSRWRSERILGPRPLA
Sbjct: 174 RRVRSGTSLLWWRWMATTATATSRWRSERILGPRPLA 210
BLAST of jgi.p|Trimin1|354681 vs. uniprot
Match: A0A836CNT1_9STRA (Translation protein SH3-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNT1_9STRA) HSP 1 Score: 75.5 bits (184), Expect = 1.920e-13 Identity = 83/123 (67.48%), Postives = 84/123 (68.29%), Query Frame = 1
Query: 37 GTAVQVGIQPSKVELTKLKLDKDRTALLDRGSARQEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXG---------------------------------AEWDELVVVEVDGDDGDSDIEMEE 306
GTAVQVGIQPSKVELTKLKLDKDRTALLDR + XXXXXXXXXXXXXXXXXXXXXXXXXXXXX AEWDELVVVEVDGDDGDSDIEMEE
Sbjct: 92 GTAVQVGIQPSKVELTKLKLDKDRTALLDRRKRKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAEWDELVVVEVDGDDGDSDIEMEE 214
BLAST of jgi.p|Trimin1|354681 vs. uniprot
Match: A0A6A6L7D5_HEVBR (Uncharacterized protein n=1 Tax=Hevea brasiliensis TaxID=3981 RepID=A0A6A6L7D5_HEVBR) HSP 1 Score: 52.8 bits (125), Expect = 5.160e-6 Identity = 28/46 (60.87%), Postives = 33/46 (71.74%), Query Frame = 1
Query: 7 SLPVRKQDE------GGTAVQVGIQPSKVELTKLKLDKDRTALLDR 126
S+PVRK DE G+ V VGI PSKV +TKL+LDKDR +LLDR
Sbjct: 17 SMPVRKDDEVQIEKVNGSTVNVGINPSKVVITKLRLDKDRKSLLDR 62
BLAST of jgi.p|Trimin1|354681 vs. uniprot
Match: G3HPH6_CRIGR (60S ribosomal protein L26 n=1 Tax=Cricetulus griseus TaxID=10029 RepID=G3HPH6_CRIGR) HSP 1 Score: 49.7 bits (117), Expect = 4.610e-5 Identity = 25/44 (56.82%), Postives = 31/44 (70.45%), Query Frame = 1
Query: 10 LPVRKQDE-----GGTAVQVGIQPSKVELTKLKLDKDRTALLDR 126
+P+RK DE GT V VGI PSKV +T+LKLDKDR +L+R
Sbjct: 1 MPIRKDDEVREKANGTTVHVGIHPSKVVITRLKLDKDRKKILER 44
BLAST of jgi.p|Trimin1|354681 vs. uniprot
Match: A0A1I8C2N8_MELHA (KOW domain-containing protein n=2 Tax=Meloidogyne TaxID=189290 RepID=A0A1I8C2N8_MELHA) HSP 1 Score: 51.2 bits (121), Expect = 5.950e-5 Identity = 25/43 (58.14%), Postives = 32/43 (74.42%), Query Frame = 1
Query: 16 VRKQDEGGTAVQVGIQPSKVELTKLKLDKDRTALLDRGSARQE 144
+ ++ GT V VGI PSKV LTKLK+DKDR ALL+R +A +E
Sbjct: 84 ITREKANGTTVHVGIHPSKVVLTKLKMDKDRRALLERKAAGRE 126
BLAST of jgi.p|Trimin1|354681 vs. uniprot
Match: A0A498I2E1_MALDO (Uncharacterized protein n=1 Tax=Malus domestica TaxID=3750 RepID=A0A498I2E1_MALDO) HSP 1 Score: 49.3 bits (116), Expect = 7.740e-5 Identity = 27/50 (54.00%), Postives = 32/50 (64.00%), Query Frame = 1
Query: 10 LPVRKQDE-----------GGTAVQVGIQPSKVELTKLKLDKDRTALLDR 126
+PVRK DE G+ V VGI PSKV +TKL+LDKDR +LLDR
Sbjct: 1 MPVRKDDEVHIERITREKVNGSTVNVGINPSKVVITKLRLDKDRKSLLDR 50
BLAST of jgi.p|Trimin1|354681 vs. uniprot
Match: A0A836CGM1_9STRA (WW domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGM1_9STRA) HSP 1 Score: 1829 bits (4738), Expect = 0.000e+0 Identity = 1272/1272 (100.00%), Postives = 1272/1272 (100.00%), Query Frame = 1
Query: 22 MSTSVEEPLDLIRLSLDERVYVKCRGDRELRGKLHAYDQHLNLVLGEVEETVTTVEIEEETEEELVTTSKRNVEMLFVRGDMASKAESADQRNRTVRSFMLNFLEDRDGSIKKRLDLGLHQVESGRAVTDAVVQEVARACPQLRGLALRGCAALTDAALWAVARHLAATLXXXXXXXXXXXXAVGLRSLALTCRALEGLDVSRVPAIDDVTLSAAALIIPRMPHLTRRSALPPLAATXXXXXXXXXXXRVIAGGQWQLRTLSLEGCAAVSDVGAADLARASPSLTRLNVSHCARVGEYGDGALVALGRHCARLRRLEAVGCHRGCPELEALLLTGCAAVTGAAVAALAERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPQIGRLFLSRLCQAALAGVARCGDARLVCACRLPFSEPAHEYFGLQPRPDSAIRQAEIALRQAHAANVIQCAARRHLLRRRQLERRRRKLLARSIVALQALARAHLTRAWYREWRKQVLRQRGATRVQMAWRALQARRRTRAIRDGHAARVGRGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIVLQVEAEKVRQTAAIKVCGVVMVRRAQCRLRRLRAARRRESERWRAAVRLQRWWRCRLARTVLAIMKFTHSAAGCGYTEGAAADAELRRQHALGAAAVTIQSFWRAVRGRQLSKLQLALCVARRLRSEAANKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAAEARRALRAVESRARPLLQQREALAAREDAESAALRQSRATLEPERLRAQALAEELDHAVVTKDLYTDSDKLSGVPQRFLTKFLQVRLQELRAASDAKLKALEHSCEQQAKKVRHTQRLLRQVRKELNAIGGGAADKVRLERSNRIRRRVRAERGAATTIQRHFRGWRVRRAVWSWCRDYWVAQEDPATGDMYYYNTWSQEARWTKPLEISLFERAPAQRRSRASARPRNPPTIVASVDPNGGWVAMVARGAAGGADTPLWHHTGTLQYRWSAPNDGGGGSGGDAAFEAEAGTRAVAMAHAAGRGFAVLRPIGERGWEEVVATEEEPTSNLKLGAAAARSLVYYRNSATHEARWSLSPRSAFGEGFAAARATRHDGRAVGDASTGGDGERQVELWRGADDVASDTVFYE 3837
MSTSVEEPLDLIRLSLDERVYVKCRGDRELRGKLHAYDQHLNLVLGEVEETVTTVEIEEETEEELVTTSKRNVEMLFVRGDMASKAESADQRNRTVRSFMLNFLEDRDGSIKKRLDLGLHQVESGRAVTDAVVQEVARACPQLRGLALRGCAALTDAALWAVARHLAATLXXXXXXXXXXXXAVGLRSLALTCRALEGLDVSRVPAIDDVTLSAAALIIPRMPHLTRRSALPPLAATXXXXXXXXXXXRVIAGGQWQLRTLSLEGCAAVSDVGAADLARASPSLTRLNVSHCARVGEYGDGALVALGRHCARLRRLEAVGCHRGCPELEALLLTGCAAVTGAAVAALAERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPQIGRLFLSRLCQAALAGVARCGDARLVCACRLPFSEPAHEYFGLQPRPDSAIRQAEIALRQAHAANVIQCAARRHLLRRRQLERRRRKLLARSIVALQALARAHLTRAWYREWRKQVLRQRGATRVQMAWRALQARRRTRAIRDGHAARVGRGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIVLQVEAEKVRQTAAIKVCGVVMVRRAQCRLRRLRAARRRESERWRAAVRLQRWWRCRLARTVLAIMKFTHSAAGCGYTEGAAADAELRRQHALGAAAVTIQSFWRAVRGRQLSKLQLALCVARRLRSEAANKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAAEARRALRAVESRARPLLQQREALAAREDAESAALRQSRATLEPERLRAQALAEELDHAVVTKDLYTDSDKLSGVPQRFLTKFLQVRLQELRAASDAKLKALEHSCEQQAKKVRHTQRLLRQVRKELNAIGGGAADKVRLERSNRIRRRVRAERGAATTIQRHFRGWRVRRAVWSWCRDYWVAQEDPATGDMYYYNTWSQEARWTKPLEISLFERAPAQRRSRASARPRNPPTIVASVDPNGGWVAMVARGAAGGADTPLWHHTGTLQYRWSAPNDGGGGSGGDAAFEAEAGTRAVAMAHAAGRGFAVLRPIGERGWEEVVATEEEPTSNLKLGAAAARSLVYYRNSATHEARWSLSPRSAFGEGFAAARATRHDGRAVGDASTGGDGERQVELWRGADDVASDTVFYE
Sbjct: 1 MSTSVEEPLDLIRLSLDERVYVKCRGDRELRGKLHAYDQHLNLVLGEVEETVTTVEIEEETEEELVTTSKRNVEMLFVRGDMASKAESADQRNRTVRSFMLNFLEDRDGSIKKRLDLGLHQVESGRAVTDAVVQEVARACPQLRGLALRGCAALTDAALWAVARHLAATLXXXXXXXXXXXXAVGLRSLALTCRALEGLDVSRVPAIDDVTLSAAALIIPRMPHLTRRSALPPLAATXXXXXXXXXXXRVIAGGQWQLRTLSLEGCAAVSDVGAADLARASPSLTRLNVSHCARVGEYGDGALVALGRHCARLRRLEAVGCHRGCPELEALLLTGCAAVTGAAVAALAERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPQIGRLFLSRLCQAALAGVARCGDARLVCACRLPFSEPAHEYFGLQPRPDSAIRQAEIALRQAHAANVIQCAARRHLLRRRQLERRRRKLLARSIVALQALARAHLTRAWYREWRKQVLRQRGATRVQMAWRALQARRRTRAIRDGHAARVGRGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIVLQVEAEKVRQTAAIKVCGVVMVRRAQCRLRRLRAARRRESERWRAAVRLQRWWRCRLARTVLAIMKFTHSAAGCGYTEGAAADAELRRQHALGAAAVTIQSFWRAVRGRQLSKLQLALCVARRLRSEAANKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAAEARRALRAVESRARPLLQQREALAAREDAESAALRQSRATLEPERLRAQALAEELDHAVVTKDLYTDSDKLSGVPQRFLTKFLQVRLQELRAASDAKLKALEHSCEQQAKKVRHTQRLLRQVRKELNAIGGGAADKVRLERSNRIRRRVRAERGAATTIQRHFRGWRVRRAVWSWCRDYWVAQEDPATGDMYYYNTWSQEARWTKPLEISLFERAPAQRRSRASARPRNPPTIVASVDPNGGWVAMVARGAAGGADTPLWHHTGTLQYRWSAPNDGGGGSGGDAAFEAEAGTRAVAMAHAAGRGFAVLRPIGERGWEEVVATEEEPTSNLKLGAAAARSLVYYRNSATHEARWSLSPRSAFGEGFAAARATRHDGRAVGDASTGGDGERQVELWRGADDVASDTVFYE 1272
BLAST of jgi.p|Trimin1|354681 vs. uniprot
Match: D7G8U9_ECTSI (Hypothetical leucine rich repeat calmodulin binding protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8U9_ECTSI) HSP 1 Score: 263 bits (671), Expect = 8.520e-68 Identity = 437/1012 (43.18%), Postives = 532/1012 (52.57%), Query Frame = 1
Query: 304 TVRSFMLNFLEDRDGSIKKRLDLGLHQVESGRAVTDAVVQEVARACPQLRGLALRGCAALTDAALWAVARHLAATLXXXXXXXXXXXXAVGLRSLALTCRALEGLDVSRVPAIDDVTLSAAALIIPRMPHLTRRSALPPLAATXXXXXXXXXXXRVIAGGQWQLRTLSLEGCAAVSDVGAADLARASPSLTRLNVSHCARVGEYGDGALVALGRHCARLRRLEAVGCH----------------------RGCPELEALLLTGCAAVTGAAVAALAERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPQIGRLFLSRLCQAALAGVARCGDARLVCACRLPFSEPAHEYFGLQPRPDSA--IRQAEIALRQAHAANVIQCAARRHLLRRRQLERRRRKLLARSIVALQALARAHLTRAWYREWRKQVLRQRGATRVQMAWRALQARRRTRAIRDGHAARVGRGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIVLQVEAEK---VRQTAAIKVCGVVMVRRAQCRLRRLRAARRRESERWRAAVRLQRWWRCRLARTVLAIMKFTHSAAGCGYTEGAAADAELRRQHALGAAAVTIQSFWRAVRGRQLSKLQLALCVARRLRSEAANKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAAEARRALRAVESRARPLLQQREALAAREDAESAALRQSRATLEPERLRAQ--ALAEELDHAVVTKDLYTDSDKLSGVPQRFLTKFLQVRLQELRAASDAKLKALEHSCEQQAKKVRHTQRLLRQVRKELNAIGGGAADKVRLERSNRIRRRVRAERGAATTIQRHFRGWRVRRAVWSWCRDYWVAQEDPATGDMYYYNTWSQEARWTKPLEISLFE 3252
++RSF+LNFLE RD SIKKRLDL +HQ E+GR VTDAVVQEV + P++ GL+LR C +TD +W +ARH A LR L + XXXXXXXXXXX YGD AL+ LGR C +L L+A GC RGCP+LE L+LTGC +TG +V AL XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX IGR F++ LC + + SEPA +FG QPR ++ + + E R+ AA V+Q R L R R RR ++ + QA+ R + R WYR WR QV QR A +Q WR L RR T +R R RG L+ EA + + + +R+ + L L+A R + W A+++Q WR R+A+ ++ M+ LR Q AAA+TIQSFWRAVR R L+ +Q AL R+++ XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX E ++ LRA+ES+ARPLL + + L ++A + RQ E LRA+ + EEL H T D YTDSDK++G QRFLTKFLQVRL EL+A + +L+ L+ + K RH R+LRQ +EL +G G +KV+L R+ R+R++ R+ER + TIQR FRGWRVRRA+ SW RDYW+ ED ATGD+YY NTW+QE RW KPLEISLFE
Sbjct: 158 SIRSFLLNFLEGRDCSIKKRLDLYVHQTETGRPVTDAVVQEVCKLRPEMIGLSLRNCIEVTDVGMWCIARHTTA-----------------LRELNVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--------------------XXXXXXXXXXXYGDRALIQLGRSCHQLTGLDAFGCSHAQVWLLHVGVITLDPGLLSVARGCPKLEKLMLTGCGGITGKSVRALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXALRALCSMNAQFLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXG--IGRRFMAELCHS------------------MKLSEPAQAFFGFQPRKNAKELLAKKEATNRRIIAAIVVQSLMRGRLARGRSSIVRRNWIIKTRLAIAQAIIRGYFVRKWYRAWRAQVREQRAAAAIQATWRMLGDRRTTERLRREKLFRE-RGQSLATRIQAGWWGYRGRVRMVEVRAIRARRLLLEARTQARRELAAIVIQSNLRRLFAQKELLELRRLRDEALERXXXXXXXXXXIQSLARMRQGRAVLAALKARRDLKILEWEMALKVQAAWRGRVAKMMVMTMRI------------------LREQARQNAAAITIQSFWRAVRARHLATIQRALFKIRQMQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFECKQHLRALESKARPLLLKLDELT--QNAAKLSERQRFVVTAVEPLRAEHVTIREELFHIRHTTDKYTDSDKINGCRQRFLTKFLQVRLVELKANVEERLEKLDAETIEIEVKERHNTRVLRQTERELIPLGKGTVEKVKLLRTARLRKKARSERSGSITIQRIFRGWRVRRAINSWYRDYWIESEDAATGDVYYVNTWNQEIRWVKPLEISLFE 1091
BLAST of jgi.p|Trimin1|354681 vs. uniprot
Match: A0A6H5KKL6_9PHAE (WW domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKL6_9PHAE) HSP 1 Score: 184 bits (466), Expect = 3.500e-43 Identity = 171/544 (31.43%), Postives = 226/544 (41.54%), Query Frame = 1
Query: 1717 ALARAHLTRAWYREWRKQVLRQRGATRVQMAWRALQARRRTRAIR---------DGHAARVGRGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIVLQVEA---EKVRQTAAIKVCGVVMVRRAQCRLRRLRAARRRESERWRAAVRLQRWWRCRLARTVLAIMKFTHSAAGCGYTEGAAADAELRRQHALGAAAVTIQSFWRAVRGRQLSKLQLALCVARRLRSEAANKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAAEARRALRAVESRARPLLQQREALAAREDAESAALRQSRATLEPERLRAQALAEELDHAVVTKDLYTDSDKLSGVPQRFLTKFLQVRLQELRAASDAKLKALEHSCEQQAKKVRHTQRLLRQVRKELNAIGGGAADKVRLERSNRIRRRV--------------------RAERGAATTIQRHFRGWRVRRAVWSWCRDYWVAQEDPATGDMYYYNTWSQEARWTKPLEISLFE 3252
A+ R + R WYR WR QV QR A +Q WR L RR T +R A R+ G L+ EA EK Q AA+ V + +R+ + L L+A R + W A+++Q WR R+A+ ++ M+ LR Q AAA+TIQSFWRAVR R L+ +Q AL R+++ A+ AA+ R V + +PL R A+ EEL H T D YTDSDK++G QRFLTKFLQVRL EL+A + +L+ L+ + K RH R+LRQ +EL +G G +KV+L R+ R+R++V R+ER + TIQR FRGWRVRRA+ SW RDYW+ ED ATGD+YY NTW+QE RW KPLEISLFE
Sbjct: 520 AIIRGYFARKWYRAWRAQVREQRAAAAIQATWRMLGDRRTTERLRREKLFRERGQSLATRIQAGWWGYRSSAPEVIRWDSKHIVLSLLILFAEVASACKRSGLYEPGDYFWRLEHRRLFAQKELLELRR-LRNEALAREKRNQAAALLVQSLARMRQGRAVLAALKARRDLKILEWEMALKVQAAWRGRVAKMMVMTMRI------------------LREQARQKAAAITIQSFWRAVRARHLATIQRALFKIRQMQDGASK--------------------------GECALCVWKGKLKLDELTHNAAKLSERQRFVATAVKPL----------------------------RAEHVAIREELFHIRHTTDKYTDSDKVNGCRQRFLTKFLQVRLVELKANVEERLEKLDAEAIEIEVKERHNTRVLRQTERELIPLGKGTVEKVKLLRTARLRKKVSDSIAFASTDIALGNEHTTARSERSGSITIQRIFRGWRVRRAINSWYRDYWIESEDAATGDVYYVNTWNQEIRWVKPLEISLFE 990
BLAST of jgi.p|Trimin1|354681 vs. uniprot
Match: A0A7S2RT07_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RT07_9STRA) HSP 1 Score: 147 bits (371), Expect = 7.210e-36 Identity = 85/207 (41.06%), Postives = 129/207 (62.32%), Query Frame = 1
Query: 2629 LRAVESRARPLLQQREALAAREDAESAALRQSRATLEPERLRAQALAEELDHAVVTKDLYTDSDKLSGVPQRFLTKFLQVRLQELRAASDAKLKALEHSCEQQAKKVRHTQRLLRQVRKELNAIGGGAADKVRLERSNRIRRRVRAERGAATTIQRHFRGWRVRRAVWSWCRDYWVAQEDPATGDMYYYNTWSQEARWTKPLEISLF 3249
L+ VE A+PL + E L + +A ++ + LE R L EEL+ + + D+ +++G PQRFLT++L+VR+ E A +A++ + + + R +R++RQVR+EL + G A K + +R R+R RVR E+ A+TTIQRHFRG R+R+A++SW RDYW D TGD Y+YNTWS+E RWT+PLE++L
Sbjct: 7 LKRVEELAKPLYLREEELVQEKKKLAADAQRLKNALEAARKDTDDLREELETMLSVTHKHWDTSRITGTPQRFLTEYLKVRMAEQLAEKEAQIAQDKDRYNELVVQARQRERMIRQVRRELEPLTRGMAVKTKRDRIVRLRNRVRLEKWASTTIQRHFRGHRLRQALFSWYRDYWTEVNDDTTGDTYFYNTWSEEVRWTRPLEMTLL 213
BLAST of jgi.p|Trimin1|354681 vs. uniprot
Match: D7FXS6_ECTSI (U6 snRNA-associated Sm-like protein LSm3 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FXS6_ECTSI) HSP 1 Score: 135 bits (341), Expect = 5.780e-34 Identity = 66/82 (80.49%), Postives = 80/82 (97.56%), Query Frame = 1
Query: 22 MSTSVEEPLDLIRLSLDERVYVKCRGDRELRGKLHAYDQHLNLVLGEVEETVTTVEIEEETEEELVTTSKRNVEMLFVRGDM 267
MS+SVEEPLDLIRLSLDER++VKCRG+RELRGKLH+YDQHLN+VLG+VEETVTTVE++E+T EE+V TSKR++EMLFVRGD+
Sbjct: 1 MSSSVEEPLDLIRLSLDERIHVKCRGERELRGKLHSYDQHLNMVLGDVEETVTTVEVDEDTYEEIVRTSKRSIEMLFVRGDV 82
BLAST of jgi.p|Trimin1|354681 vs. uniprot
Match: A0A7S2FJT0_9STRA (U6 snRNA-associated Sm-like protein LSm3 n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FJT0_9STRA) HSP 1 Score: 134 bits (337), Expect = 3.280e-33 Identity = 66/82 (80.49%), Postives = 77/82 (93.90%), Query Frame = 1
Query: 22 MSTSVEEPLDLIRLSLDERVYVKCRGDRELRGKLHAYDQHLNLVLGEVEETVTTVEIEEETEEELVTTSKRNVEMLFVRGDM 267
++ SVEEPLDLIRLSLDER+YVKCRGDRELRGKLHAYDQHLN+VLG+VEETVTT EI+E+T EE++ TSKR +EMLFVRGD+
Sbjct: 17 VTMSVEEPLDLIRLSLDERIYVKCRGDRELRGKLHAYDQHLNMVLGDVEETVTTQEIDEDTSEEIIRTSKRMIEMLFVRGDV 98
BLAST of jgi.p|Trimin1|354681 vs. uniprot
Match: A0A4D9CUN8_9STRA (U6 snRNA-associated Sm-like protein LSm3 n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CUN8_9STRA) HSP 1 Score: 133 bits (334), Expect = 5.090e-33 Identity = 64/82 (78.05%), Postives = 79/82 (96.34%), Query Frame = 1
Query: 22 MSTSVEEPLDLIRLSLDERVYVKCRGDRELRGKLHAYDQHLNLVLGEVEETVTTVEIEEETEEELVTTSKRNVEMLFVRGDM 267
MS+SV+EPLDLIRLSL+ER+YVKCRG+RELRGKLHA+D+HLN++LGEVEETVTT EI+EET+EE++ TS+R VEMLFVRGD+
Sbjct: 1 MSSSVDEPLDLIRLSLEERIYVKCRGERELRGKLHAFDRHLNMILGEVEETVTTPEIDEETDEEIIRTSRRTVEMLFVRGDV 82
BLAST of jgi.p|Trimin1|354681 vs. uniprot
Match: A0A7S2GP21_9STRA (U6 snRNA-associated Sm-like protein LSm3 n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GP21_9STRA) HSP 1 Score: 133 bits (334), Expect = 6.710e-33 Identity = 65/79 (82.28%), Postives = 75/79 (94.94%), Query Frame = 1
Query: 31 SVEEPLDLIRLSLDERVYVKCRGDRELRGKLHAYDQHLNLVLGEVEETVTTVEIEEETEEELVTTSKRNVEMLFVRGDM 267
SVEEPLDLIRLSLDER+YVKCRGDRELRGKLHAYDQHLN+VLG+VEETVTT E++E+T EE++ TSKR +EMLFVRGD+
Sbjct: 13 SVEEPLDLIRLSLDERIYVKCRGDRELRGKLHAYDQHLNMVLGDVEETVTTQELDEDTNEEIIRTSKRMIEMLFVRGDV 91
BLAST of jgi.p|Trimin1|354681 vs. uniprot
Match: A0A7S3M171_9STRA (U6 snRNA-associated Sm-like protein LSm3 n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M171_9STRA) HSP 1 Score: 130 bits (328), Expect = 3.090e-32 Identity = 63/79 (79.75%), Postives = 76/79 (96.20%), Query Frame = 1
Query: 31 SVEEPLDLIRLSLDERVYVKCRGDRELRGKLHAYDQHLNLVLGEVEETVTTVEIEEETEEELVTTSKRNVEMLFVRGDM 267
S++ PLDLIRLS+DER++VKC+GDRELRGKLHA+DQHLN+VLGEVEE+VTT EI+EETEEE+V TSKRN+EMLFVRGD+
Sbjct: 2 SIDTPLDLIRLSIDERIFVKCKGDRELRGKLHAFDQHLNMVLGEVEESVTTREIDEETEEEIVKTSKRNIEMLFVRGDI 80
BLAST of jgi.p|Trimin1|354681 vs. uniprot
Match: A0A7S0G6S6_9STRA (U6 snRNA-associated Sm-like protein LSm3 n=2 Tax=Bacillariophyta TaxID=2836 RepID=A0A7S0G6S6_9STRA) HSP 1 Score: 130 bits (328), Expect = 8.040e-32 Identity = 65/86 (75.58%), Postives = 77/86 (89.53%), Query Frame = 1
Query: 10 HIAAMSTSVEEPLDLIRLSLDERVYVKCRGDRELRGKLHAYDQHLNLVLGEVEETVTTVEIEEETEEELVTTSKRNVEMLFVRGDM 267
++ A +EEPLDLIRLS+DERVYVKCRGDRELRGKLHAYDQHLN+VLGEVEETVTT E++EETEEE+V + R+V+MLFVRGD+
Sbjct: 26 NLLAHEVKMEEPLDLIRLSIDERVYVKCRGDRELRGKLHAYDQHLNMVLGEVEETVTTHEVDEETEEEIVRKATRSVKMLFVRGDI 111 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|354681 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7
BLAST of jgi.p|Trimin1|354681 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
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The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_19046 ID=mRNA_19046|Name=jgi.p|Trimin1|354681|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=566bp|location=Sequence derived from alignment at Contig_382:19951..21162- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGCTGTCGCTGCCTGTGCGCAAGCAGGACGAGGGAGGCACTGCCGTGCAback to top protein sequence of jgi.p|Trimin1|354681 >Trimin1|354681|estExt_Genemark1.C_Ctg_3820005 ID=Trimin1|354681|estExt_Genemark1.C_Ctg_3820005|Name=jgi.p|Trimin1|354681|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=103bp MLSLPVRKQDEGGTAVQVGIQPSKVELTKLKLDKDRTALLDRGSARQEERback to top mRNA from alignment at Contig_382:19951..21162- Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_19046 ID=mRNA_19046|Name=jgi.p|Trimin1|354681|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1212bp|location=Sequence derived from alignment at Contig_382:19951..21162- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_382:19951..21162- >mRNA_19046 ID=mRNA_19046|Name=jgi.p|Trimin1|354681|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=309bp|location=Sequence derived from alignment at Contig_382:19951..21162- (Tribonema minus UTEX_B_3156 )back to top |