Trimin1|354681|estExt_Genemark1.C_Ctg_3820005 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|354681
Unique NameTrimin1|354681|estExt_Genemark1.C_Ctg_3820005
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length103
Homology
BLAST of jgi.p|Trimin1|354681 vs. uniprot
Match: A0A836CDD2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDD2_9STRA)

HSP 1 Score: 130 bits (326), Expect = 3.220e-37
Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 0
Query:    1 MLSLPVRKQDEGGTAVQVGIQPSKVELTKLKLDKDRTALLDRGSARQEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAEWDELVVVEVDGDDGDSDIEMEE 102
            MLSLPVRKQDEGGTAVQVGIQPSKVELTKLKLDKDRTALLDRGSARQEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAEWDELVVVEVDGDDGDSDIEMEE
Sbjct:    1 MLSLPVRKQDEGGTAVQVGIQPSKVELTKLKLDKDRTALLDRGSARQEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAEWDELVVVEVDGDDGDSDIEMEE 102          
BLAST of jgi.p|Trimin1|354681 vs. uniprot
Match: A0A836CNT1_9STRA (Translation protein SH3-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNT1_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 2.030e-14
Identity = 83/123 (67.48%), Postives = 84/123 (68.29%), Query Frame = 0
Query:   13 GTAVQVGIQPSKVELTKLKLDKDRTALLDRGSARQEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXG---------------------------------AEWDELVVVEVDGDDGDSDIEMEE 102
            GTAVQVGIQPSKVELTKLKLDKDRTALLDR   +  XXXXXXXXXXXXXXXXXXXXXXXXXXXXX                                  AEWDELVVVEVDGDDGDSDIEMEE
Sbjct:   92 GTAVQVGIQPSKVELTKLKLDKDRTALLDRRKRKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAEWDELVVVEVDGDDGDSDIEMEE 214          
BLAST of jgi.p|Trimin1|354681 vs. uniprot
Match: A0A835YRU4_9STRA (KOW domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRU4_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 9.580e-8
Identity = 29/29 (100.00%), Postives = 29/29 (100.00%), Query Frame = 0
Query:   14 TAVQVGIQPSKVELTKLKLDKDRTALLDR 42
            TAVQVGIQPSKVELTKLKLDKDRTALLDR
Sbjct:   77 TAVQVGIQPSKVELTKLKLDKDRTALLDR 105          
BLAST of jgi.p|Trimin1|354681 vs. uniprot
Match: A0A6A6L7D5_HEVBR (Uncharacterized protein n=1 Tax=Hevea brasiliensis TaxID=3981 RepID=A0A6A6L7D5_HEVBR)

HSP 1 Score: 52.8 bits (125), Expect = 6.800e-7
Identity = 28/46 (60.87%), Postives = 33/46 (71.74%), Query Frame = 0
Query:    3 SLPVRKQDE------GGTAVQVGIQPSKVELTKLKLDKDRTALLDR 42
            S+PVRK DE       G+ V VGI PSKV +TKL+LDKDR +LLDR
Sbjct:   17 SMPVRKDDEVQIEKVNGSTVNVGINPSKVVITKLRLDKDRKSLLDR 62          
BLAST of jgi.p|Trimin1|354681 vs. uniprot
Match: G3HPH6_CRIGR (60S ribosomal protein L26 n=1 Tax=Cricetulus griseus TaxID=10029 RepID=G3HPH6_CRIGR)

HSP 1 Score: 49.7 bits (117), Expect = 6.820e-6
Identity = 25/44 (56.82%), Postives = 31/44 (70.45%), Query Frame = 0
Query:    4 LPVRKQDE-----GGTAVQVGIQPSKVELTKLKLDKDRTALLDR 42
            +P+RK DE      GT V VGI PSKV +T+LKLDKDR  +L+R
Sbjct:    1 MPIRKDDEVREKANGTTVHVGIHPSKVVITRLKLDKDRKKILER 44          
BLAST of jgi.p|Trimin1|354681 vs. uniprot
Match: A0A1I8C2N8_MELHA (KOW domain-containing protein n=2 Tax=Meloidogyne TaxID=189290 RepID=A0A1I8C2N8_MELHA)

HSP 1 Score: 51.2 bits (121), Expect = 8.070e-6
Identity = 25/43 (58.14%), Postives = 32/43 (74.42%), Query Frame = 0
Query:    6 VRKQDEGGTAVQVGIQPSKVELTKLKLDKDRTALLDRGSARQE 48
            + ++   GT V VGI PSKV LTKLK+DKDR ALL+R +A +E
Sbjct:   84 ITREKANGTTVHVGIHPSKVVLTKLKMDKDRRALLERKAAGRE 126          
BLAST of jgi.p|Trimin1|354681 vs. uniprot
Match: A0A498I2E1_MALDO (Uncharacterized protein n=1 Tax=Malus domestica TaxID=3750 RepID=A0A498I2E1_MALDO)

HSP 1 Score: 49.3 bits (116), Expect = 1.160e-5
Identity = 27/50 (54.00%), Postives = 32/50 (64.00%), Query Frame = 0
Query:    4 LPVRKQDE-----------GGTAVQVGIQPSKVELTKLKLDKDRTALLDR 42
            +PVRK DE            G+ V VGI PSKV +TKL+LDKDR +LLDR
Sbjct:    1 MPVRKDDEVHIERITREKVNGSTVNVGINPSKVVITKLRLDKDRKSLLDR 50          
BLAST of jgi.p|Trimin1|354681 vs. uniprot
Match: A0A1I8C104_MELHA (KOW domain-containing protein n=1 Tax=Meloidogyne hapla TaxID=6305 RepID=A0A1I8C104_MELHA)

HSP 1 Score: 51.2 bits (121), Expect = 1.660e-5
Identity = 25/43 (58.14%), Postives = 32/43 (74.42%), Query Frame = 0
Query:    6 VRKQDEGGTAVQVGIQPSKVELTKLKLDKDRTALLDRGSARQE 48
            + ++   GT V VGI PSKV LTKLK+DKDR ALL+R +A +E
Sbjct:  139 ITREKANGTTVHVGIHPSKVVLTKLKMDKDRRALLERKAAGRE 181          
BLAST of jgi.p|Trimin1|354681 vs. uniprot
Match: A0A5P1FVV5_ASPOF (KOW domain-containing protein n=2 Tax=Asparagus officinalis TaxID=4686 RepID=A0A5P1FVV5_ASPOF)

HSP 1 Score: 49.3 bits (116), Expect = 2.140e-5
Identity = 24/40 (60.00%), Postives = 30/40 (75.00%), Query Frame = 0
Query:    6 VRKQDEGGTAVQVGIQPSKVELTKLKLDKDRTALLDRGSA 45
            + ++   G+ V VGI PSKV +TKLKLDKDR ALLDR +A
Sbjct:   38 ITREKVNGSTVNVGINPSKVVITKLKLDKDRKALLDRKAA 77          
BLAST of jgi.p|Trimin1|354681 vs. uniprot
Match: A0A444WU82_ARAHY (Uncharacterized protein n=1 Tax=Arachis hypogaea TaxID=3818 RepID=A0A444WU82_ARAHY)

HSP 1 Score: 49.7 bits (117), Expect = 2.250e-5
Identity = 27/53 (50.94%), Postives = 33/53 (62.26%), Query Frame = 0
Query:    3 SLPVRKQDE-------------GGTAVQVGIQPSKVELTKLKLDKDRTALLDR 42
            S+P+RK DE              G+ V VGI PSKV +TKL+LDKDR +LLDR
Sbjct:   46 SMPIRKDDEWVIHIERITREKVNGSTVNVGIHPSKVVITKLRLDKDRKSLLDR 98          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|354681 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
A0A836CDD2_9STRA3.220e-37100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CNT1_9STRA2.030e-1467.48Translation protein SH3-like domain-containing pro... [more]
A0A835YRU4_9STRA9.580e-8100.00KOW domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A6A6L7D5_HEVBR6.800e-760.87Uncharacterized protein n=1 Tax=Hevea brasiliensis... [more]
G3HPH6_CRIGR6.820e-656.8260S ribosomal protein L26 n=1 Tax=Cricetulus grise... [more]
A0A1I8C2N8_MELHA8.070e-658.14KOW domain-containing protein n=2 Tax=Meloidogyne ... [more]
A0A498I2E1_MALDO1.160e-554.00Uncharacterized protein n=1 Tax=Malus domestica Ta... [more]
A0A1I8C104_MELHA1.660e-558.14KOW domain-containing protein n=1 Tax=Meloidogyne ... [more]
A0A5P1FVV5_ASPOF2.140e-560.00KOW domain-containing protein n=2 Tax=Asparagus of... [more]
A0A444WU82_ARAHY2.250e-550.94Uncharacterized protein n=1 Tax=Arachis hypogaea T... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR014722Ribosomal protein L2, domain 2GENE3D2.30.30.30coord: 3..52
e-value: 3.0E-7
score: 32.5
IPR005756Ribosomal protein L26/L24, eukaryotic/archaealPFAMPF16906Ribosomal_L26coord: 6..42
e-value: 4.6E-9
score: 36.6
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 49..65
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 85..102
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 29..48
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 29..102

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_382contigContig_382:20208..21162 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|354681mRNA_19046Tribonema minus UTEX_B_3156 mRNAContig_382 19951..21162 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|354681|estExt_Genemark1.C_Ctg_3820005 ID=Trimin1|354681|estExt_Genemark1.C_Ctg_3820005|Name=jgi.p|Trimin1|354681|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=103bp
MLSLPVRKQDEGGTAVQVGIQPSKVELTKLKLDKDRTALLDRGSARQEER
SPPPPPPPPPPPTGGNEGGAQGAAAAAGAEWDELVVVEVDGDDGDSDIEM
EE*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR014722Rib_L2_dom2
IPR005756Ribosomal_L26/L24P_euk/arc